RNA id: XM_039803179.1


Basic Information

Item Value
RNA id XM_039803179.1
length 4807
RNA type mRNA
GC content 0.45
exon number 29
gene id ipo11
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 23754325 ~ 23906456 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGATATGGACGGTGCCAGTTCAGTGGTGCTGCAGGCCTTAACCCAAGCTACCAGTCAGGACACAGCTGTGCTGAAACCTGCCGAGGAGCAGCTCCGACAGTGGGAGACGCAGCCAGGTTTCTACTCTGTCCTTCTGAATATCTTCAATAACCACATGCTCGATGTGAACGTCAGGTGGCTGGCTGTGCTGTACTTCAAAAATGGCATTGACAGATACTGGAGGAGAGTAGCGCCTCATGCTTTATCAGAAGAGGAGAAGACATCATTGCGTGCTGGCCTCATCACAAATTTCAATGAACCGGTCAATCAGATAGCGACCCAGATTGCAGTACTGATAGCCAAGGTGGCCCGTCTGGACTGCCCCAGGCAATGGCCAGAGCTCATTCCCATTCTTCTCGAGTCCGTGAAGGGTCAGGATGGCTTGCAGCAGCACAGGGCACTGCTAACCTTCTATCATGTCACCAAAACCCTAGCATCCAAACGTCTGGCGCAGGACAGACGACTTTTCCAGGATCTGGCGTCGGGAATCTACAGCTTTGCATGCTCCCTGTGGAGCCATCACACCGACTGCTTCCTCCAGCAGATCTATGCCAGAGATGAGGCTGGAGCGCTCAGCTCACTGGAGAGGACGCTGCTCTCTCTTAAAGTGCTTCGCAAGTTGACAGTCTTCGGATTTCAAGAGCCACAACAGAATATGGAAGTGATGGGTTTCCTGAATGCAGTGTTTGAGAGGCTAAAACAGTTCTTGGAATGCTGTCGGCAGGTTGGTCCAGACAGCACATGTAGAGAAAAGCTGGAGAAGATAATCATACTGTACACTAAAGTTTTGTTAGATTTCCTGGAGTACCATCCGTGTGCATTTATACCCCTAATCCAGCGTTCTCTGGAATTTGCCGTCAGCTACCTGTTTACACCTGCTGGGGAGGGAGTGACATTTGAACGCTTTATTGTTCAGTGCATGAACCTCATCAAGATCATTGTTAAGAATGATGCCTACAAACCTTCCAAAAACCTTGATGACAGTAAACCAGAGAGTCTGGAGGCTCACAAGATCAAGACAGCTTTCTTTACACACCCCACACTGACAGAGATTGGACGCCGGCTCGTCTCACACTACTTCCTTCTCACAGAGGAAGAGCTGGCAATGTGGGAAGAGGACCCAGAGAGCTTTGCTGTTGAAGAAACAGGCGGTGACTCTTGGAAATACAGTTTACGGCCCTGTACAGAAGTATTGTTCCTGGATATCTTCCACAACTACAACCAGACACTGATACCGGTGCTACTGGATATGGTTCAGAATCTCCAGGGCCCAACCAATGTGGAAGACTCCGTTCAGTTGCGAATGAAGGATGCAGTATACAATGCAGTTGGACTGGCAGCTTATGAGCTCTTTGACAACGTGGACTTTGACCAGTGGTTCAAGAATCAGCTTCTTGGGGAGCTGCAAGTAGGCCATCACAGATACAAGTTGATTCGCCGACGAGTCATCTGGCTAATAGGACAGTGGATCTCTGTCAAGTTCAAATCTGACCTTCGACCTTTACTCTACGAGGTCATCCTGAGCCTCATGCAGGATCCCGACTTGGTGGTGCGGATTGAGACAGCTACAACCCTGAAGCTCACTGTTGATGACTTTGAGTTCCGGACAGAGCAATTCCTCCCAtACCTGGAGTCTATCTTTGGGCTGCTCTTCCAGTTGTTGCAACAGGTGACAGAGTGCGACACTAAAATGCAGGTGCTCCATGTCATTTCCTGTGTCATCGAGAGAGTGAACATCCAGATTCGGCCATACGTAGGCTGTCTGGTGCAGTACCTGCCCCTGCTCTGGAAGCAATCTGAAGAACACAACATGCTACGATGTGCCATCCTCACTACACTCATTCACCTGGTACAGGGTCTGGGGGCAGAGTCTAAGAATCTGTACCCTTTCCTTCTTCCTGTCATCCAGCTGAGCACCGATGTTTCCCAGCCGCCGCATGTGTATTTGCTGGAGGATGGACTAGAGCTTTGGTTGGTGACTTTGGAGAACAGCCCAGCCATCACCCCGGAGCTGCTCCGAATTTTCCAGAACATGTCAGCTTTGCTGGAGTTGAGCTCCGAGAACCTGCGCACCTGCTTTCAGATTGTAAATGCCTACTTATATTTGTCTGCCACAGACTTTCTtcagAACTATGCAGATTCATTGTGTCGAGCTTTCTGCAATCTGCTGAAAGACATCACGAATGAGGGACAGGTCCAAGTGCTCAAGGTGGTAGAGATAGCTTTAAAGGTTAGCCCCATACTGGGAGCCCACATGTTCCAGCCCTTGCTGCCACTTGTCTTCAGAGGAATTGTGGACGGCGAGaGATATCCTGTGGTGATGTCGACCTACCTAGGAATCATGGGCCGCATCCTTCTCCAGAACTCcagtttcttctcctctctgctcACTCAAATGGCTTCTGAGTGTAGCCAGAAGATGGACCAGTTGTTGGGCAGTGTTATAGAGATGTGGGTCGACCGCATGGACAACATCACTCAGCCAGAGAGGAGGAAGCTATCGTCGCTGGCTCTGCTTTCCCTCCTACCATCTGACAACAGTGTGATCCAGGACAAGTTCTGTGGCATCATCAACATCTCCGTTGAGGCACTGCATGATGTAATGACAGAAGATTCTGAAACGGGCACCTTCAAAGACTGCATGCTGATGAGCCATTTTGAGGAGCCCAAGCTGAGTGACGATGAGGAGCCACCAACTGAGCAGGACAAGAGGAAGAAACTGTTGGCTTTGGAGGACCCGGTGCACAGCGTTTCCCTCCAGCAGTTTGTCTATGAGAAGCTGAAGGCGCAGCAGGCCATGATGGGGGACCAGGGCTTCGGGGTCCTGATGGAGACCGTGGACACAGAGCTCGTCAGGCAGCTCCAGGAGTTCCTCCAAGGCCTCTGAATCACCTATACAATTCTTCACTACCTTACAGAACCATCTCCTCCCGTTTTTGAAAATGTACCCGAAAGGCTAATAATCTGCCCGACATGTGGACTAATCCCACCCCTCCCAACCGCTACCCATGCTTTGCCTTATCTATATTCAGACCTAGCCTTGTCGACTGTCCTCAGCTAACACCCCTCGTCCCTTTCTCTAGTATTTGGATTCctttgcatcttttttttttatttatttttttctctctcaagaTGGGGTTTAAGTGGGTACTTTAAAATGTGAAAGTACCTTCACACCCACATACAGACATCACCACACTAGAGCTTCCACTCAattattctagtttcttctctttctgtgGTTTTAAGGTGGAATGGGTAGAAAATTGGACGGATGGTATAAAAGTTGGGGATTTGAGGAGTATATACTGTTAGAGAAATCCCCTGCAGGTGCCAGAGCAGGAGCCTCAGACTATTTTCTATGGAGAAACATAGCAGAAATGTGCATAAACCGTACCTAAAGGACCTAAAGCAGTGTTTACAGAATCTAttcttaaaaagagaaaaaaaagaaatgtaattttttatgTATGTAAAGTATGGATGATATTCTGCATTACgatattttagtttgtttttactttgtgtTAATTTCTCTTCCATTTAAAGATAATACTTTTGTCGTAACCAGAGGTCAAGTTGAAGTAACTACTGAAAGAACTCAtgagtgtttttctttctttttgatttGAGTTAGAGGGAAATTTTGTTGACTTTAAAATGGGTGATTTTTAAATGGTTGAGTGCTGAACCACATttatatgtacatacatactgCTGCTAATTGATGGTGTGTTGGAGCACTTTAATAACCAAAAACTGTTTCACCTGTTTTCATCTTTTTCTCAATGGTACATCTTCTCACAGTGGTAGAAAGCCTCGGAGCAGTGCAGCAGGATTATGCAAATTAGGCTTTACTTGCATTAAGACCCCCATCTTAAACTGTTGCCATATTTCAGGTCTCAATAACTTGTACAAAATAGACATAACATGCCATTAGGCTGTGTCTTGAAATAATTTGATGAATTCTGGCCTAGGTAGCTGTTAAAGAAGTCCCATTGTGAGCCACTGCGACTTTGAGTCAGAATACATTGTTGTGCATAGCTGTCCTGCTGCCCTGCCAGTTTTTCTGATTCGACCAATCGTTTATGACTTTAGTGGTAGAGATAAAGCTTTGATATATTTGATTTGACAGAAGAACCAGTTTTCGTTTTTTCTCAGAACAATTGATTATTTGGACGTTTGGCAAACCTATATAGTattataaagaaaaataaatgacttaATATTGGCATCAAAGTTCTTTTAATagttgaaaaaaatacatttaaacatgtAACTGTTTCATGCAGAATCCAAAATGGGgtcttaaaaaaatatctattgTTTTCTGTGATTTGAAACTCATATTgagaaaaaactgaatttacTTTGGGTTACACTGCCTTTATAATCTATTCTTCTGGAATTTATGGATAAATatggttttatttgctctcattAGGTTGGTCAACCTCCCTGGGAAGGAGCTCATCTTGACACTGTGATAGAGTTGAGTAGCAGTCAGAATTACGGCCTTATGCTTTCAGCCTTACCTATCCTTGAAACTAAAAAGACATTTCTTACTATTATGTTAATTTCTTAACTAGTGTAAACAGTAGATGATTTCTGTCCTTGTATTCTGTTAATGACCGCAATTATGAAGTTAAGAACGTAACACGAAATACAGTAAAGAGATGTTTTGGGGTTGGTTATGCTTTGATGGGAAATAATccttgttgctttttccaaagcattcaataaaatgcagtaatcAGCCAAAA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K25201 IPO11, RANBP11; importin-11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85904 lncRNA upstream 8886 23744939 ~ 23749835 (+) True G64130
TU85900 lncRNA upstream 23428 23734824 ~ 23735293 (+) True G64127
TU85820 lncRNA upstream 196489 23525647 ~ 23562232 (+) False LOC120560905
TU85783 lncRNA upstream 315408 23431481 ~ 23443313 (+) False LOC120560908
TU85948 lncRNA downstream 108622 24015078 ~ 24017068 (+) True G64172
TU85963 lncRNA downstream 143512 24049968 ~ 24058761 (+) True G64183
TU85970 lncRNA downstream 195050 24101506 ~ 24104352 (+) True G64188
TU85984 lncRNA downstream 258221 24164677 ~ 24169528 (+) True G64200
TU85987 lncRNA downstream 258221 24164677 ~ 24168564 (+) False G64200
XM_039803799.1 mRNA upstream 36192 23704402 ~ 23722529 (+) True ercc6l2
XM_039803800.1 mRNA upstream 36192 23706277 ~ 23722529 (+) False ercc6l2
XM_039803796.1 mRNA upstream 196436 23487967 ~ 23562285 (+) True LOC120560905
XM_039803798.1 mRNA upstream 271215 23408216 ~ 23487506 (+) True dock8
XM_039804011.1 mRNA upstream 404457 23352950 ~ 23354264 (+) True LOC120561043
XM_039803739.1 mRNA downstream 86197 23992653 ~ 24000805 (+) True si:dkey-250l23.4
XM_039802040.1 mRNA downstream 97626 24004082 ~ 24013484 (+) True rgs7bpa
XM_039802041.1 mRNA downstream 97629 24004085 ~ 24013484 (+) False rgs7bpa
XM_039803945.1 mRNA downstream 199534 24105990 ~ 24110189 (+) True c6h5orf51
XM_039803944.1 mRNA downstream 203864 24110320 ~ 24117183 (+) True fbxo4
TU85875 other upstream 65430 23692662 ~ 23693291 (+) True G64108
TU85622 other upstream 828516 22929899 ~ 22930205 (+) True G63905
XR_005639510.1 other upstream 2159922 21588876 ~ 21598799 (+) False LOC120560787
TU85087 other upstream 3080805 20676417 ~ 20677916 (+) True G63480
XR_005639483.1 other upstream 3269883 20477812 ~ 20488838 (+) False wdr31
XR_005639471.1 other downstream 917262 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 917263 24823719 ~ 24834620 (+) False cdc14b
TU86491 other downstream 1778516 25684972 ~ 25696570 (+) False LOC120561182
TU86550 other downstream 2007926 25914382 ~ 25915529 (+) False LOC120560031
TU86770 other downstream 2506413 26412869 ~ 26414597 (+) True G64814

Expression Profile