RNA id: XM_039803181.1


Basic Information

Item Value
RNA id XM_039803181.1
length 3095
RNA type mRNA
GC content 0.50
exon number 16
gene id malt1
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 28902756 ~ 28916610 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAGACCGTGCAGAAGTAGGTGTGTCTGTAACTTTTAGCATTTCTTCCAGGAAGTAGAATTTTTGTCTTGAAGTTAAGTGTTGTCCGGTGGAACCGGGAAAAGCGTTGATAAACTATTACTTGCTGGCCGTCATGTCGGATTCTTTGGACCGGTCCACCAAGATCAATTTGTTGAAAGAGCCGGTTGTGAAGAAGCTCTGTGAGGTGTTGGAAAAATCCAGCAATAGAGGATGGCGAAAACTTGGAGAGATAGTCGGCAATGACAGACGTATTAAAGTCAGCTCAAACGACATGGAGATGTGCTCTCTGAAGGTGTTGGAGCTGGAGGGAAGCCCGAGCCGCATGttgctgaggctgatgggagaACGAGGCTGCACCACAGGTCAACTGGTTGACTACCTCCAAACTCTCGGCAACTCAGAGGCCCTGCAGTGCCTGAAACCATCAgCCCTTCAGATCCTCATTCAGCCCCAGTCGGTGGCTCTCATATCTGGCCACAATCTTCGCCTGAGCTGCCACGCTGTGGGCAAATCTCCAGTACAGTACCAGTGGTTCAAGACCAAGGAAGAGGTGCCAAACAGCTTCTCGCCAGACCTGGTGATAAGTCCAGTCCAACTGAAGGACGCTGGCTTTTACATCTGCCGGGTCAACTGTGGAGATACTTTTGAATTCAGCCAGTGGGCTCAGGTGGACGTCCTGAATGTCACCATGTCTTGCGGGCAGAGTTATCATTCCTTAGAGGGTCGGCTGAAGTTGGTGATCCAGCCCCAGTCCCAGCGGCTAAATGTTGGGGAAACCCTGCAGCTGGAGTGTGGAGCCGTGGGACGGCCGATCCCTCGATACCAGTGGCACAGAAATGGAGTTCCGGTCCCCAGCGCCACAAAGAGGAAACTCACGATTCCTCACTTGATGCAGGATCAGCACGGCCGGTATCGTTGTGAGATCAGCAGCAGCACCGAGAGAATGTGGACCAATGAAGTCGACGTTGTTATCGATGATGTTTACGCCATTGGGGGAGGTTCCAGTGAATTGTTCCTAAATAGTATTCCAGAACAACTTTATGCAACTGACAAAGTGGCCCTGCTGATCGGCAATCTGTCTTACCAGAACCACCCGCAGCTCAAAGCTCCCATGGTGGACGTGTACGACCTCACCAACCTCCTGCGACAGCTAAACTTCCAGGTGGTTTCACTGCTGGACCTCACAGAGCAAGAGATGAGAAACGCTGTCGACGAGTTCCTGTTGCTGCTTCACAAAGGAGTCTATGGTCTGCTGTACTATGCTGGTCACGGATATGAGAACTACGGAAACAGTTTCATGGTGCCGGTAGACGCACCAAACCCGTACCGGTCAGCCAACTGTTTATGTGTGCAGAGCATCCTAAAACTGATGCAGGAGAAGGAGACGGGCCTCAATGTTTTTCTGCTGGACATGTGCAGGAAGAGGAATATTCATGATGACAGCGCTCCAAACATTGTCCTAAGGGTTACGGCCAACATTGTCTTCGGATACGCTACGTGCCAGGATGCCGAGGCCTTCGAGCTGAGTTCCAGCGGCTTCACCAACGGCGTGTTTGTCAAGTTTTTAAAGAAGCGGCTGCTAGACGATGAGAAGATCACCGTGGTGCTGGACAGAGTCGCTGAGGACATGGGTCAGTTTGACGCTACAAAGGGGAAGCAGGCTCTAGAGATCCGCAGTAGTCTGTCGGAGAGGAGAGCTCTGAGCGATCCTATCCAGCCAGGCGACAGCGCTGATCTTGCTCACGCTCGCAGCCTCCAGTGGGCAAAGACTCACGAGCTTCCTGAGAGTATGTGTCTCAACTTTGACTGCGGGGCTCAGATCAAGTTGGGCTTCGCTGCAGAGTTCTCCAACGTGCTTGTCATTTACACTCACATCATTAAGAAGCCCGAGGACATGTCCCTCTGCCAGGCTCACGTCACCGACTTCTCACAGGACCTTGATGTGGATCCTAAAGAGATGAACAGAGAGACTCCAGAGGAGACAGGCATCTACCTTCTGTCCAGCAACCTGCCGCAGCACTGTCTTTACACTAGAGTCAGCTCACTGCAGAAACTCAGAGAGGAGCTGGTCTTCACCGTGTGCCTTCAGGGCACCTTCACCGCCATGGATGACGAATCCGTCCACTGGACCAAAAGCATCAACATTGGCAAGCCGCTGATCGCACGACTGGACCTGAACCGGGCCATGCGGCGAAATAGCTGCATGCAGACATGCGGGATGCCTCACAGCCCGTCCCACAGCCCCTGTCACAGCCCTGGGCCCGAacaccacctccacctccattACGGGTCGCACCAGGCCCAGGATTACAGCCGCCTGTCACCACAGCACCACTACCTGGACGTCTACGAGCGTGTTCAGGGTGCAGTGGGAGGCTGTGGGGATTCCTTCTATGACCTCAGCAAGTCTCACTATGAACCTGCGTATGACTCAGCTGCTGGGCTTTCAAGCTCACCAGGCCGGCTCAGCATCCCTATAGAGACCACTGACGACATCAACGAGCTGCAGACGGTGTTCATCAACAGTCTGCAGCTTCAGCAGCCGTGAAAACGTCTAACGTTGTATCTGGATTATTGCTGCTTTTACTGTTACATGTTGTGACttaataagattttttttttatattatattcttCCACTTAAAAGCATTATTTGCCTCGACAAACTGAAttcacacatacatttttagaAGAATGAAAAAGTGTACCTCAGTAAACTGGGATAATGTCTGCAATCATGTTTGGCGGAGGTGTCAATTTACCAATAATTCACCGATGAAAAGCAAAGATACTGGATGCTAATAGTCAAGATCACAGTTCTGATTTTCCAGAGCTGGAAATGTACCTCATACAAACATTTGTTTATAAGAATATAAGCCAAATGTGCACATTTGGTCTAAAAAACTATCTGCAGTCAGAGGAAAGTGAGGCTGGAGGAGCTCCCTCTGCTGTACAGTTAGAATACATATCTAAGACCATCAGCAGAATTTTTGTAATATAATTAACCAGACGAGAGAAAGTCatggttaaaaagaaaagaaaaaacgatTAAATAATTTCACCCACTTTCCACAAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004197 cysteine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87569 lncRNA upstream 55509 28845626 ~ 28847247 (+) True mboat4
TU87556 lncRNA upstream 86356 28816185 ~ 28816400 (+) True G65418
TU87555 lncRNA upstream 87280 28815254 ~ 28815476 (+) True G65417
TU87533 lncRNA upstream 136531 28766020 ~ 28766225 (+) True G65396
TU87531 lncRNA upstream 146563 28755865 ~ 28756193 (+) True G65394
TU87618 lncRNA downstream 69003 28985613 ~ 29002180 (+) True G65473
XR_005639509.1 lncRNA downstream 156331 29072941 ~ 29131216 (+) True LOC120560778
TU87732 lncRNA downstream 161816 29078426 ~ 29098313 (+) True G65565
TU87739 lncRNA downstream 187378 29103988 ~ 29105609 (+) True G65570
TU87928 lncRNA downstream 630839 29547449 ~ 29614880 (+) True G65710
XM_039802534.1 mRNA upstream 11886 28881031 ~ 28890870 (+) True LOC120560261
XM_039802535.1 mRNA upstream 11886 28881032 ~ 28890870 (+) False LOC120560261
XM_039802532.1 mRNA upstream 22757 28873642 ~ 28879999 (+) True mfsd10
XM_039802533.1 mRNA upstream 22757 28873774 ~ 28879999 (+) False mfsd10
XM_039802531.1 mRNA upstream 29407 28860511 ~ 28873349 (+) True LOC120560259
XM_039803185.1 mRNA downstream 1396 28918006 ~ 28927848 (+) True emb
XM_039803186.1 mRNA downstream 18356 28934966 ~ 28938642 (+) True hint2
XM_039804352.1 mRNA downstream 23932 28940542 ~ 28955828 (+) True LOC120561296
XM_039804350.1 mRNA downstream 23933 28940543 ~ 28955828 (+) False LOC120561296
XM_039802639.1 mRNA downstream 46803 28963413 ~ 28979486 (+) True LOC120560307
TU87117 other upstream 1600986 27205234 ~ 27301770 (+) True G65084
TU86927 other upstream 2244787 26645020 ~ 26657969 (+) False si:dkey-178e17.1
XR_005639500.1 other upstream 2260275 26614237 ~ 26642481 (+) False cltcl1
TU86791 other upstream 2406428 26494335 ~ 26496328 (+) False c6h22orf39
TU87830 other downstream 433514 29350124 ~ 29351753 (+) False ubac1
XR_005639517.1 other downstream 1270238 30186848 ~ 30212108 (+) False fbxo21
TU88038 other downstream 1330277 30246887 ~ 30250240 (+) False LOC120560820
TU88040 other downstream 1331329 30247939 ~ 30250268 (+) False LOC120560820
TU88039 other downstream 1331373 30247983 ~ 30251519 (+) True LOC120560820

Expression Profile