RNA id: XM_039803185.1


Basic Information

Item Value
RNA id XM_039803185.1
length 2031
RNA type mRNA
GC content 0.41
exon number 9
gene id emb
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 28918006 ~ 28927848 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAACCCTGTCTGAATAATGGATGGAGTCGGCCACCCACAGGCTGCAGAGTGATATCATGGCTGCGTCACTTGTGCAGCTGAGGAAGGAGGGGTGGGTGGTGGTTTTTAGATGATGCAGCAGGCAGAGGAAGTAGAGAACAAGTAAGAAACAGAGAGAACAGAGGGAAAATAATCATGTCATCTTCCTGGGAGCAGCTCTTTTTTCAGATCCTCCTTCTCGTCTTCTGCAGACACATCAATACaaAGACACCTGGTCCAACGCCCCCGCCACTGGTTTCCATCAGCAGTCCCCTGCCAACAGATGTAAGGAGCGTTGTTCTTAAAgGTGAAAGTCACACAGAGAGTGTTGAACTGTTGAACCCTGTCAATCTGACACTGGAGTGTACCTGGACAGGTAATCAGAACAAACTACCAAACATAACTGGGTTTTGGAGAAAAGATGGGGATGAAGTTGAGAACAGCCGTCTCACAGTGCAGTTGGAGAACGATCAGTATAATCTCAAACGAGCGTTCAGCATCGTCAGTGAAGAAAACCTCGGAAATTACTCATGCATGTTTGAAAGTGAGGCAAAAATAGACTTTGTTTTGGCAGCTCCACACATGCATGAGGTGCGAGATAAACCAATAGTGAGCTATGTGGGGGACTCTGTGGTGATTATATGTAAAATGGAGGAAACCAAACCAAAGCCCATCACCTGGAACTGGTACAAAGCAAATGGTACCGACAAGGAGCAGATATTCACTGCTGCAGAGCCTCTTCGGTATGAAATCAAAAACGATGAGAGGAAGACCAAACTGGTGGTGTACAACCTGACGGAGGCTGACGGAGGCTTGTATTACTGCGGTGCGGTGTACGCCATCAAAACCACGATAGGCCTCGTGGAGCTGAAGGTCATCAACTTTACAGAGCCTCTGAAGCCTTTCCTAGCCATCGTGATCGAGGTTATCGTTCTGGTCGTCGCCATTATGTTCTACGAGAGATATCAGTCTAAGAAAAACTACACAGCAGGAAAAGGGATGAATGaccaaacaaacacactGACACAGGGAGAAAATAATGAACCAGAGGAAGGTTCTTCAATGAGACAGCGGAAAGTTTAAAGACTACAAATTCAACAGATCTTATATTCTTTCAAATCTGTTGTTTGCTTGTTTTAGGATGTGAATTATAGAGCTGTAAAGCAATATCTCAGCAACTATTTGAGTATGTTCACCAAACAATGTGCAATAACCACCATTTAATAATCATTCCTTTAATTCATACACAAGTAGCCTTTTTTAGATTAAAATTTTAACTTTATTACACTGGaagatgtgtttattttttttgtttttattgacaGTGCTGTTGTGACAGCTAAAAGagcaaagcatttttttttctgtttttgcccTATATGCACCCACTTCCTGTGGAAAAACTGCCATGCATTGCATCACTATGCCTTTGAAGCCTCTTTCTCAAAAAGGAAGTGGGTTTAATTCTTTTGAGCAACAACTTAAATCACTTTACTTCTGTTAAGTATGTATTATAGTTTGTGAGCAAACACTTACTATTTATACTGTGCTAGCAattactttttgtcactttctagTTTGTCCTTGCAGTAATGTATGCCTAAAATGCTTTACATTACCATAATAATGTGTATATCAAGATGTAGCATCCTATATGCAGAtgcttgtgtgtttttcattttaatgtatCAGAAGATGGTCAGAAAGGTAGGTAGAAAGGTTCCCCTAATCATGACTTTAACTGTCTTTAGTTGTCAGCCTGCACTTAACCTATAAAGGTGTACCAGGGTATTTGTAAACATGCCAATTCAACTATACAAGTCACTGCCTGGAATAACTATCAAGCCTTTGTGTTAGCGGATATGGAGACAGAGCTTACTTAAAGGGGAACGCCACTGGGTTTTCTGTTTACAGGTCTTATGTGAAAATAATTGTATAAATACTGTTAAAGCTCCAGAGGgacaagggaaaaaaaatatgaagaatAAAAATtgatatctctggttctgctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87569 lncRNA upstream 70759 28845626 ~ 28847247 (+) True mboat4
TU87556 lncRNA upstream 101606 28816185 ~ 28816400 (+) True G65418
TU87555 lncRNA upstream 102530 28815254 ~ 28815476 (+) True G65417
TU87533 lncRNA upstream 151781 28766020 ~ 28766225 (+) True G65396
TU87531 lncRNA upstream 161813 28755865 ~ 28756193 (+) True G65394
TU87618 lncRNA downstream 57765 28985613 ~ 29002180 (+) True G65473
XR_005639509.1 lncRNA downstream 145093 29072941 ~ 29131216 (+) True LOC120560778
TU87732 lncRNA downstream 150578 29078426 ~ 29098313 (+) True G65565
TU87739 lncRNA downstream 176140 29103988 ~ 29105609 (+) True G65570
TU87928 lncRNA downstream 619601 29547449 ~ 29614880 (+) True G65710
XM_039803180.1 mRNA upstream 1396 28902756 ~ 28916610 (+) True malt1
XM_039803181.1 mRNA upstream 1396 28902756 ~ 28916610 (+) False malt1
XM_039803182.1 mRNA upstream 1396 28902943 ~ 28916610 (+) False malt1
XM_039802534.1 mRNA upstream 27136 28881031 ~ 28890870 (+) True LOC120560261
XM_039802535.1 mRNA upstream 27136 28881032 ~ 28890870 (+) False LOC120560261
XM_039803186.1 mRNA downstream 7118 28934966 ~ 28938642 (+) True hint2
XM_039804352.1 mRNA downstream 12694 28940542 ~ 28955828 (+) True LOC120561296
XM_039804350.1 mRNA downstream 12695 28940543 ~ 28955828 (+) False LOC120561296
XM_039802639.1 mRNA downstream 35565 28963413 ~ 28979486 (+) True LOC120560307
XM_039804024.1 mRNA downstream 85758 29013606 ~ 29016925 (+) True zgc:158260
TU87117 other upstream 1616236 27205234 ~ 27301770 (+) True G65084
TU86927 other upstream 2260037 26645020 ~ 26657969 (+) False si:dkey-178e17.1
XR_005639500.1 other upstream 2275525 26614237 ~ 26642481 (+) False cltcl1
TU86791 other upstream 2421678 26494335 ~ 26496328 (+) False c6h22orf39
TU87830 other downstream 422276 29350124 ~ 29351753 (+) False ubac1
XR_005639517.1 other downstream 1259000 30186848 ~ 30212108 (+) False fbxo21
TU88038 other downstream 1319039 30246887 ~ 30250240 (+) False LOC120560820
TU88040 other downstream 1320091 30247939 ~ 30250268 (+) False LOC120560820
TU88039 other downstream 1320135 30247983 ~ 30251519 (+) True LOC120560820

Expression Profile