RNA id: XM_039803189.1


Basic Information

Item Value
RNA id XM_039803189.1
length 4377
RNA type mRNA
GC content 0.49
exon number 12
gene id LOC120560558
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 79632 ~ 99504 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCACTGCGCCTGCGCAGACGGTAGACAGCTGATAACTCATCTATTATGCTACTTcgctaaataaaaaatcttcaAGAAAACTGACCGGAGCCCGTCGCTGGACGCACCGGAGGACcgagacacaaagtTGTGCGATGGGAGTTTGTCTCCACGGGGGAAACATCGAGCTGAAGAATCAACACCAACAACACCTGAACtgaacacacactaacacacctgtgtgcccacacacacacacgccctcgCACCACAGAGGGAGTTGTTTTTTCACCTTCAGGTCAGACACTGCCGTCCCACAGTGCATTGCTGCGTCACCGCCGTCCACCATGTCGGACGCCCCCGAGGCTGCGCCCCCCAGCCCCCCTACCCTTACCAACCCCGCCCCACCTGAGGTCACCAATCCCACCAAACCTGGCAGAAAGACCAACCAGCTGCAGTACATGCAGAATGTGGTGGTGAAGACTCTGTGGAAGCATCAGTTTGCCTGGCCTTTCTACCAACCTGTCGATGCCATCAAACTCTGCCTGGCAGACTACCACAAGGTGATCAAGAACCCGATGGACATGGGAACCATCAAGAAACGTCTGGAGAACAATTATTACTGGAGTGCCAGTGAGGCCATGCAGGACTTCAACACCATGTTCACCAACTGTTATATCTACAACAAGccTACAGATGACATCGTCCTCATGGCTCAGGCTTTAGAGAAAATCTTCCTGCAGAAAGTCGCTCAGATGCCTCAGGAAGAAGTCGCTCTGCTGCCTCCAGCTCCCAAAGGCAAGACCAAGAGCAAACCCGCTGCTGCTACTACAGtGAGCCAGCAGGCAGAGTCCTCAGcctccccacccccctcctacccctctccctccccctctcagaCGCCTGTCATCTCAACCACGCCCACACCTGTTCAGACCACACCCCCTGTCTCTGCCCCACAGCCCCCGGCAACCATGATGCCGTCTGCACAGCCCGTCGTAAAGAAAGGTGTGAAGAGGAAAGCCGACACCACCACTCCCACCACATCGGCCATCTCTGCCGGCCGTGCAGACTCTCCATCCGCTCAGGACACCAAACCGCCCAAACTAGGCTTGTCCCGCCGTGAGGCCGCCGCCCGACCCGCCAAGGCCCGCAGGGAGACGGTGGAGGAGGTGCCAGGGGGTGAGGTGGGAGGCGGCGGAGGTGGAGCCGGGAGGAGTAAGGGCGGTAAGCTGGGTGAGCAGATGAAACACTGCGACGCCATCCTGAAGGAGATGCTCTCTAAGAAACATGCCGCCTACGCCTGGCCCTTCTACAAGCCAGTGGACGCCGAGGCACTGGAGCTGCACGATTACCATGACATCATCAAACACCCCATGGACCTCAGCACCGTCCGGAAAAAGATGGATAAAGCAGAGTACAGTGATCCTCAAAGTTTTGCGACTGATGTCAGGTTAATGTTCTCCAACTGTTACAAGTACAACCCTCCAGACCATGAGGTGGTGGCCATGGCCCGCAAGCTGCAGGATGTGTTTGAGATGCGTTTTGCTAAGATCCCAGATGAGGGCCTGGAAGCATCGGTCCCATCTACAACACCATTGGTCAGTAAAAGCACTGCCTCCTCTGACAGCAGCAACAACTCCTCCTCCGACGAATCgtccgactcagaggaggagcgAGCCACGCGATTGGCTGAGCTACAGGAGCAGGTTGGTGCTGCCGACCAATCACAGTTGAAGGCGGTGCACGAGCAGCTGGCCGTCCTGTCCCAGGCTCCAGTCAGCaagccaaagaagaagaaagagaagaaagataaggagaagaagaaagagaaggagaaagacaaaGGGAACAAGGGCAAGATGGAGGAAGAAAAGAAGCCCAAGGCTGCCGCTCAGCAGCCcaaaccagccaatcagaagaaAGCGCCAGCCAGGAAAGCCAACAGCACGGTAACCGCCACGAGgcAACCTAAGAAAGGCAGTAAGGCGTCGGGCGGTGGCTCGGCTAATGGAGATGACGGTGAGGAGTCATCGCTGCCGATGTCTTATGACGAGAAGCGCCAGCTGAGTCTGGATATAAACCGGCTGCCGGGGGAGAAGCTGGGCCGTGTCGTCCACATCATCCAGTCCAGAGAGCCGTCGCTGAGGGACTCCAACCCCGACGAGATCGAAATCGACTTTGAAACCCTCAAACCCTCCACGCTTCGAGAGCTGGAGCGCTACGTCAAATCCTGCCTTCAGAAGAAGCAGAGGAAGCTACTGCaGAAGGCAGCTGGAGGCGGGGCCTCGGGAGGCGGGGCTAGTCGTTTGAGTGgcagctcctcttcctcctctgatgACAGCTCCTCAACAGgaacctcctcttcctctgacacagactgaacacacacagtacacgtacagaaacacacagtacACCCACACGTTActgaacacgcacacacagaggtttatacacacacacacacacacacacacacacacagctcaatCTATAAAGTTaacacatgcatatatacattaACGCACACATCCATGTAAACTTCCAtcctgaacaaacacaaacaaaagacagagatacacactctgaacttacaacacacacacacactcacacacacacacgcccagaCTTGGAGACTGTATGTAAATAGGCTGCCCTGTTTTTTAGCTCctagtgttgtttttttcttcctggaGGAATGCCGACAGATagaagggaagaagaaagaaacaacTTCCCAGcgagagaagaagaagggagggagacaTGGTAGAGAGAcgggctgtctgtctgtctgtctgtctgtctgagagtcGTATTGATCTTCTCTCACACAACGCTCGAGCATCGTTTCCGTGGAggctttcttcttctccttggACGGCCGGCTGTGACCCCTGACCTCTGAAAACATTCCAGAAGCATCTATAGAGCatcatggaggaggaggaggaggaggaggaggaggtgatcTCAGTGGGTTTTACTCTGATTTAAGGTTTTGGATATTGATTGAATGGAAGTTGAACTTGAAGAGCTACCTTTGGTCAACAAGGTGGAAACGCCTGTGGGACAAAGTTCGGAGCATCATGGGACACATGGGAGCCAATCAAGTTCTTACATTAGAGTGTAGTTCACATCTGCAGTAAATCTGTAACCAGTGAAACTGTTTAACTTCAGACTGGAGATGATCCAGTCCTGATCAATTATGTTCAAACATCAACTCTTTGCTTTATGACGTCCACAAATCAACTTAAATGGACTTGAAACTTGCTGCAGAGAAAAGCTCTTAAATAATCCACTTTTAGAGCCACTCAGTGTGTTTATTACTTTTCTTTAAAGAGTATCTGAAATCCATCAGGTTAAACTGTCTGTATGGTCAATTTATCATTCTGGTCTTAGTCTGCATTGTTCACTGTaacagcagttttttttctttttccagtgAAAATCCAGTTATTCTTTTAAAGACCAAAAGATGTCTTTAAAATGATGGTGTTACCTCTGATGTGTCTTTGGTCTGGTCccatagacacacatatataaaacagaaatcaATTCTTCCTGCTCAACACACGAGTCACATACTGAGTCTGGATGTCAAACTGACCTCAGAGCTGtcatatatatctctctctagTATGGAGACTATCTCTAGTTTGGTCAGAGGTGTGTTACGTTGCTGCTGTAGACAGCTCCACTTATTAAATCTGTGACCGAAGAAGATGGTTTAAACTTGTGCTGTCATTAGTTGTCTAACTGCAGAGGCTTTGTATCTATTGAATATGTGATTGTCAAGCTGAAATTAGGCATTTTGTTATTCTTTAACGTGATGTAAATCTGGTTTAAACTGGTGCAGCACCTAACAATTGTTGTCTTTATTAGTTATGTTCTTGATCTTTCATTTAGTTTTAGAAATGTCGGAAAATCGTGAAAAACATCAGTCTTAGTTTCTCAGTCTCAGGTGACGTCTTCAGATGTCTGGTTTTTCCAAGCAGTCCAAAACGTTCTTTAATGCACCAAACATTTTCAGAAAGGGTCTCAACTACATCAGCACTCTAATTTTAACTTTAGCTTTAGCTTTAACAATAAAATTTGACTGGGATGGATTTTTCTCTGCAACAACTTTCAAGTCTGTGcaggacttcttttttttttttttttttttattattgaaaatcttggattatttttttttatttgaaaggaAGGAAATCAATTGAAAATCTGATGGATAATTTGTATAATGATCCGCTGTGAAGCTAATCTGTGctctgctaaaaaaaaagaaaagaaaaaagtttgcTACAGGATCCAGGTTCCAAACTCTTCTTTTACTTGAAAGTAAAAACCCTCTGAGACCAAAAACCTGTCCTCTGCTGGTCCTGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77918 lncRNA upstream 62715 15528 ~ 16917 (+) False G57961
XR_005639491.1 lncRNA downstream 9062 108566 ~ 110061 (+) True LOC120560560
TU77970 lncRNA downstream 22343 121847 ~ 126263 (+) True G57994
TU77979 lncRNA downstream 66514 166018 ~ 603180 (+) True G57999
TU77996 lncRNA downstream 109777 209281 ~ 210676 (+) True G58011
XR_005639514.1 lncRNA downstream 111252 210756 ~ 212383 (+) False LOC120560799
XM_039802738.1 mRNA downstream 84173 183677 ~ 187344 (+) True ccdc157
XM_039802739.1 mRNA downstream 84173 183677 ~ 185512 (+) False ccdc157
XM_039802740.1 mRNA downstream 85576 185080 ~ 187344 (+) False ccdc157
XM_039803649.1 mRNA downstream 113532 213036 ~ 216499 (+) True LOC120560800
XM_039804134.1 mRNA downstream 123637 223141 ~ 242641 (+) False LOC120561159
TU78000 other downstream 111238 210742 ~ 212370 (+) True LOC120560799
TU78001 other downstream 111238 210742 ~ 212370 (+) False LOC120560799
TU78941 other downstream 2778897 2878401 ~ 2879744 (+) False lman2lb
TU79382 other downstream 4017775 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 4324637 4424141 ~ 4429981 (+) True G59172

Expression Profile