RNA id: TCONS_00075005


Basic Information

Item Value
RNA id TCONS_00075005
length 303
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id XLOC_038019
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 35990664 ~ 35995392 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cTCAACTAATCCCTTATGAAAACTGAGGGGCCAcgatttatttttccttttgccCTCAAATATGACACGTTTAATGACAATGATGACAAAATTCATATGTCGAAATGAACATGAAAAAAAAACACATCAACTGCTTGCTAGGTTGCTATCGAAAATCCAGCatgtaatgcacatttaaaataaggaatattatacacaaataattttaatacaaaTCTTTTCATTCCAAAAACTCAAATGACATGCATGCGTACGACACGAATGCACATtgaaaaaaacggaaaaaaacactttcacaatAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075420 lncRNA downstream 157910 35680968 ~ 35832754 (-) True XLOC_038016
TCONS_00074592 lncRNA downstream 357007 35632293 ~ 35633657 (-) True XLOC_038015
TCONS_00075004 lncRNA downstream 829659 35154830 ~ 35161005 (-) True XLOC_038013
TCONS_00075419 lncRNA downstream 830049 35154055 ~ 35160615 (-) False XLOC_038013
TCONS_00074574 lncRNA downstream 1075276 34908935 ~ 34915388 (-) True XLOC_038008
TCONS_00075421 lncRNA upstream 404519 36399911 ~ 36413250 (-) True XLOC_038021
TCONS_00075006 lncRNA upstream 750143 36745535 ~ 36746819 (-) True XLOC_038022
TCONS_00075422 lncRNA upstream 931434 36926826 ~ 36930979 (-) False XLOC_038028
TCONS_00075423 lncRNA upstream 931434 36926826 ~ 36940479 (-) False XLOC_038028
TCONS_00075424 lncRNA upstream 942054 36937446 ~ 36940750 (-) False XLOC_038028
TCONS_00074594 mRNA downstream 115613 35872698 ~ 35875051 (-) True XLOC_038018
TCONS_00074591 mRNA downstream 356837 35631440 ~ 35633827 (-) False XLOC_038015
TCONS_00074589 mRNA downstream 433267 35170335 ~ 35557397 (-) False XLOC_038014
TCONS_00074590 mRNA downstream 656022 35170768 ~ 35334642 (-) True XLOC_038014
TCONS_00074588 mRNA downstream 835575 35028297 ~ 35155089 (-) False XLOC_038013
TCONS_00074600 mRNA upstream 900865 36896257 ~ 36924388 (-) True XLOC_038027
TCONS_00074602 mRNA upstream 1345848 37341240 ~ 37366881 (-) False XLOC_038032
TCONS_00074604 mRNA upstream 1346035 37341427 ~ 37367477 (-) False XLOC_038032
TCONS_00074603 mRNA upstream 1346035 37341427 ~ 37367477 (-) True XLOC_038032
TCONS_00074605 mRNA upstream 1486042 37481434 ~ 37613792 (-) False XLOC_038033
TCONS_00074593 other downstream 288892 35701655 ~ 35701772 (-) True XLOC_038017
TCONS_00074567 other downstream 1138860 34848860 ~ 34851804 (-) True XLOC_038004
TCONS_00074564 other downstream 1237505 34753044 ~ 34753159 (-) True XLOC_038002
TCONS_00074544 other downstream 2069093 33921464 ~ 33921571 (-) False XLOC_037985
TCONS_00074543 other downstream 2069640 33920932 ~ 33921024 (-) True XLOC_037984
TCONS_00074595 other upstream 123568 36118960 ~ 36120526 (-) True XLOC_038020
TCONS_00074596 other upstream 765497 36760889 ~ 36761294 (-) True XLOC_038023
TCONS_00074597 other upstream 770231 36765623 ~ 36766028 (-) True XLOC_038024
TCONS_00074598 other upstream 774965 36770357 ~ 36770663 (-) True XLOC_038025
TCONS_00074599 other upstream 787155 36782547 ~ 36782665 (-) True XLOC_038026

Expression Profile

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