RNA id: XM_039803201.1


Basic Information

Item Value
RNA id XM_039803201.1
length 4035
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC120560565
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 7550614 ~ 7572968 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttccgGTCTACCTAACGTAGCAAACTAGCTCCAGTAGCACCGAGTAGCACTGGTAGCAACTTGAGAAGAGCCCACAAGCCTTGTCAAAAATTAGCTGCAGTACAATAAAGTGTAGGCATTTTTATGTCAACAAGGTGCTTAGAGGGCTGCGCAAATCTTTTTCTCAAAAAGCGGAGCTTTGGACTCTTAAAAACGGGTGTCCATCTCTTCTGAGTATATCCTGCTTCCACTCTGTGACTTATTGGTCACTAGAGGGGCCCCATCAGAGCAAGGGCCCAAACTGTAGCTCCAGGTCCCCTcttgtctgtgtgcgtgtgagagcTTGTGTTGAGTCCTCTGGAGACTCCCGGCTTGTCCAGCTAAGATGTCCTCCATCTTGCCGTTCACCCCTCCTGTGGTGAAGAGGCTGTTGGGCTGGAAGAAGTCTACTAGCGGCCCCGGCGGAGCAGGCGGTGGGGAACAGAACGGGCAAGAGGAGAAATGGTGCGAGAAGGCTGTGAAGAGCTTAGTGAAGAAGCTAAAGAAGACAGGCCAGCTAGATGAGCTGGAGAAAGCTATCACCACACAGAACTGCAACACCAAGTGTGTCACCATCCCCAGCAATTGCTCTGAAATATGGGGACTGAGTACACCAAATACGATAGAACAGTGGGATACATCAGGCCTATACAGCTACCCTGACCAAACCAGATCCCTGGATGGCCGCCTGCAGGTCTCCCACAGGAAGGGGCTTCCCCATGTTATCTACTGTCGCTTGTGGCGATGGCCGGACCTTCACAGCCACCACGAGCTGCGCGCCATCGAGGCCTGTGAGTATGCCTTCCACCTCAAGAAGGATGAGGTCTGCATCAACCCCTACCACTACCAGAGGGTGGAGACCCCAGTGCTGCCTCCTGTTCTTGTGCCAAGACACTCGGAAATCCTGCAAGATCTGCCACCTTTGGATGACTACACTCATTCCATACCTGAGAACACAAACTTCCCCGCAGGAATCGAACCTCCAAACAACTATATACCAGAAACGCCTCCACCCGGCTACATCAGTGAGGATGGGGAGGCAAGCGATCAACAGATGAATCAAAGTATGGACACAGgTTCTCCAGCAGAGCTCTCCCCCAGCTCCCTGTCTCCTGTCAACCACAGCATGGACCTCCAGCCGGTGACTTACTCTGAGCCAGCCTTCTGGTGCTCTATAGCCTATTACGAGCTGAACCAGCGCGTAGGGGAGACGTTCCACGCCTCTCAGCCCTCGCTGACGGTGGACGGATTCACCGATCCATCAAACTCTGAGCGCTTCTGCCTGGGCCTGCTGTCTAATGTCAACAGGAACGCCACTGTGGAGATGACCCGGAGGCACATAGGAAGAGGAGTTAGACTCTACTACATTGGAGGGGAGGTATTTGCTGAGTGCCTGAGTGATAGCGCCATCTTTGTCCAGAGTCCAAACTGCAACCAGCGGTATGGCTGGCATCCAGCAACAGTGTGTAAAATTCCTCCAGgttgtaATCTAAAAATCTTCAACAACCAGGAATTTGCAGCCCTGCTGGCTCAGTCTGTCAACCAGGGCTTTGAAGCTGTTTACCAGCTCACCAGGATGTGCACCATCCGCATGAGCTTTGTCAAAGGCTGGGGAGCTGAGTACAGGCGGCAGACTGTCACAAGCACTCCTTGCTGGATCGAGCTGCACTTGAACGGCCCCCTGCAGTGGCTGGACAAGGTTCTGACCCAGATGGGTTCCCCGTCTGCCCGCTGCTCCAGTATGTCCTAAACAGCTAaagaaatgcccccaaaaaacgCAGCCCATTACATGATCATTAAATTCCCAACTTGTGAGTcctttcatgaaaaaaaacccCACAGAATTAATTTTCTGTAACATTCTCCATAGTATTTGTGGCCCAGTTCCACATCCCTCTTttaactttacacacacacacacacacacacacacacacaaaagaacaaATGCACCTACACTGttgcactcacacatacagacttcagtaaaaaaaaaaatagaaaagaaattgGCACTTTGTTACCCATCTATGTCATGCACCTTGTTAAATTGCTTTTCCCCAAATCCTTAATATTAGATCTATTTGtggtacaaatgaaatgtatatTGGTTTTTAGTCCAGGAAGTAGGGGAAATACCAAAAATATCTGTGAATAGTTTCTCAGTATTGAAGATTGCTTGTATGAGTAACACAAGCTTGAATGCTAAAATGATCTTTGTTCCAGCCCACCCCAACCATTGTTCTGAACCTAAGTTTACTTTACTTTGGGGAAGCTTGGCCCCATCTTTTGTCAAGGGGAGGTGGCTTGGTGAAGAAACGATGATGGCCTTGGTGGCCGTTCTCCTCCTGAAGGAAACACCACACAATGTGTTTATGAAATTTGAATTGACTCTGCCAGAATGGCCCTTTCTTTTTGTAACTCTTGACGTGTGTCGTTATAAGACATACTTCTTAATGGACAAATAGGAatgttagtttaaaaaaaacaaaaaaacgaagtaattacaaaaaaaaacccaaacaaactgcaaactcgATCTGGATGTAGTTTATTTCTTTGTCATTATATGGCACTCTACATGTCCGTGGTTTAGTTGATTTCGATCCCCACTGAACAGCCTGCTATGGAAGCTAATGAGATGTTGGCCAGGCTTTGCAAGGTGCACTGGGCAGGGACCAGAGAATATCAGCTGTTTATCAaaagctatttttatttttattttttcctctttttgacTCGACACTGGGAGTCCTGGGGCTCTCCATGGTGAAGCATTGAACGTGTCACCGGGAGAAATTGAAGGTATCAATGAATTAATTCTGTTTTTAGCCTATATCCCCATTGTTTTGCTACTTTTTTGTATTCtcatgtatttttatatataaatatacttaaaaaaaattctgtcgTTCACTTTTTATTAAAGTAATATTTTCAAGACCACAGCTGTTTCTAAAGTGACATGGAGGGCATGGATCATTCCTTCGTTTTACCCAAAAGGTTTAGTTTGAATTAATTTCCAATTGCAGCTCTTTtgtcttgttaaaaaaaaaacaaaaaaaaaactcactgccCCATATGATGTGTAGCCTGTttctatcctttttttttttttttttttttttcttcaaagaaaTCCGGTGCATTTAAAGTACACAAAACGACAGATTGCCTGAAACCCCTTATCGACTTTGCTGTTAACGGTTTTAATGATTCCAGAGGCATGTAAAACTTTGTAATGGCCATTCATTTAGTCATCTCTTCACCTTTTTTGAAAAACACTCGTGACCTCTTGTAGCCTTTTGGTGCTTAGTCAAGCGGGTTAAGGTCAACCAGGTACaattggctttaaaaaaaaaaaaatgttacagaaaaATGGAAGGAAAAGCGGTTTTCTTCCATGAGGAAAGAAGAGCGAATGTGCCTGCACACTAGGACAttctgtgttaatgtgtgtattgtatttgttcTGTCTATTGAATACAGTATGTACAACAAAGACTTATTAGCTTAAACTCTGCCATTATTGTCATTATGTGGCTGTTGCGAGTTTAACATGtcgcccccccaccccacccctcccccttccccctccCTTCTTTTTGATGTAAATGTATTTACCTTACAGCACTAGTGATTGTACTTTAAGTGCACCTAGTGAAGTTTGGATTGGGGGAATTGAACCATGTGTTATAGGGTCCagtgttacattgtttttatctTTGGCCTACAACAtatgaatgtgaaaaaaaaaaatacattacaaaaaCTGACGTGGACCAGACGTACATATACATAACAgtagtacagtatgtgtgtatttaacAGTAATCTTTTTTGCAAAGCAGTCAGTACAGTAGATGTCGCAGTTGTTTTACCAGTAGAGGGCGGTATTGATAGagcagttctttttttttttttctttttttttttttttttgaccatAAGCTTCTCAGGCGTGTGGCATATTATGCAGACTTCATAAAACACTAATAAAGATTTTTATTCTCATGa

Function

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K04500 SMAD2; mothers against decapentaplegic homolog 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80312 lncRNA upstream 46600 7498489 ~ 7504014 (+) True G59804
TU80313 lncRNA upstream 49833 7498489 ~ 7500781 (+) False G59804
TU80310 lncRNA upstream 56410 7493888 ~ 7494204 (+) True G59803
TU80173 lncRNA upstream 287271 7179493 ~ 7263343 (+) False G59696
TU80171 lncRNA upstream 367177 7179493 ~ 7183437 (+) True G59696
TU80344 lncRNA downstream 1762 7574730 ~ 7576084 (+) False LOC120560567
TU80345 lncRNA downstream 1762 7574730 ~ 7576127 (+) False LOC120560567
TU80351 lncRNA downstream 14827 7587795 ~ 7588630 (+) True G59833
TU80343 lncRNA downstream 57538 7630506 ~ 7631241 (+) True G59826
TU80363 lncRNA downstream 62627 7635595 ~ 7636054 (+) True G59837
XM_039803194.1 mRNA upstream 30842 7512039 ~ 7519772 (+) True rchy1
XM_039802164.1 mRNA upstream 407594 7140197 ~ 7143020 (+) True bmp10
XM_039804327.1 mRNA upstream 413763 7108813 ~ 7136851 (+) False arhgap25
XM_039804325.1 mRNA upstream 413763 7113668 ~ 7136851 (+) True arhgap25
XM_039804328.1 mRNA upstream 414248 7108813 ~ 7136366 (+) False arhgap25
XM_039803210.1 mRNA downstream 1757 7574725 ~ 7576136 (+) True LOC120560567
XM_039803203.1 mRNA downstream 3267 7576235 ~ 7597214 (+) True si:ch211-12e13.1
XM_039803204.1 mRNA downstream 3267 7576235 ~ 7597214 (+) False si:ch211-12e13.1
XM_039803205.1 mRNA downstream 3267 7576235 ~ 7597214 (+) False si:ch211-12e13.1
XM_039803207.1 mRNA downstream 3267 7576235 ~ 7585723 (+) False si:ch211-12e13.1
TU80145 other upstream 573812 6969133 ~ 6976802 (+) False add2
TU79987 other upstream 873130 6674917 ~ 6677484 (+) False kat6a
TU79733 other upstream 2052860 5495155 ~ 5497754 (+) True G59347
TU79728 other upstream 2097120 5448136 ~ 5453494 (+) False golga3
XR_005639484.1 other downstream 27125 7600093 ~ 7623699 (+) False susd1
TU80342 other downstream 52839 7625807 ~ 7629074 (+) False zbtb26
XR_005639603.1 other downstream 111677 7684645 ~ 7684763 (+) True LOC120561481
XR_005639604.1 other downstream 117706 7690674 ~ 7690792 (+) True LOC120561492
XR_005639610.1 other downstream 120123 7693091 ~ 7693209 (+) True LOC120561498

Expression Profile