RNA id: XM_039803240.1


Basic Information

Item Value
RNA id XM_039803240.1
length 4233
RNA type mRNA
GC content 0.55
exon number 15
gene id sema4c
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 6498113 ~ 6627092 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGCAGCTGACATGGGAGCCATGGGCGGGACCAAAGTCTTGCTCCTGGTGTTTCTGGTTGGATGGGAGAAGTCGCTGGGTCTCAACTGGAACCCCATCCCACGCAAGACTGTTCGGTACCGAGATGTGTTGGACAGCATGGCACGGTTCAGCGTTCAGGGAGTGTTCAACTACAGCATGCTGACTCTGTCCGACCACGAGAGGGTTTTGTACGTCGGAGCGCGGGAGGTGTTGTTCGCCCTGGACCCCAACGACATTAGCAAACAGCTACGGCCTCAGATTGACTGGCTGGCTCCGCAGGATAAGAAGAGAGAGTGTGTTGCCAAGGGGAAGAACAACCAGACCGAGTGCTTCAACTACATCCGTTTCCTGCAGAGCTACAACCACACACACCTCTACACCTGCGGCACCTACGCCTTCCAGCCCAAATGCACCTACGTGaacGCAGACTATTTTACCCTCAACACTGCAGCCCTGGAAGATGGGAAGGGTAAATGTCCATATGACCCTGCCAAAGGACATACTGGCCTGATAGTGGATAAGGAGCTGTACTCGGCAACGCTCAATAACTTCCTGGGTACAGAGCCAGTCATTCTGAGGAACCTGGGCCAACAGCACTACAGCATGAAGAGCGAATACTTGCCTGCCTGGCTCAATGAGCCGGACTTTGTGGGTTCAGCCCTCGTGAGGGAGAGCAGTGGCACTAAAGAGGGGGACGACGACAAGATCTACTTCTTCTTCAGCGAGCGAGCGTTGGAGCTGGACTGTGACACGGAGCTCACCGTGGCCAGAGTGGCCCGGGTCTGCAAGGGGGATCTGGGTGGCACCAGGACCCTGCAGAAGAAGTGGACCACTTTCCAGAAAGCCCGGCTGGAGTGCTCTCTACCTGAGCGCCACGTCTCCTTCAACAACCTGAGGGCCGTCTTCACGCTGCCGGGCCAGGACTGGCGGGGGACCACCTTCTTTGGCATCTTCCACGCCCAGTGGGGCGACGTAGACGTGTCGGCGGTGTGCCAGTACCAGATCAGTGACGTGAAGAAGGTGTTTGAAGGATCCTACAAAGAGTACAGGGAGGCATCTCAAAGGTGGGGGCGCTACACCGGTGCTGTCCCCGTCCCGCGGCCTGGATCGTGTATAACTAACTCAGACAGGGAGAACGGCTACAACAGCTCTCTGCAGCTGCCTGATGCCACGCTCAACTTTGCCAAGAAGCACCCGCTGATGGAGGACAAAGCTCTGGCTCGCCCCCTGCTGCTCACCAAGGGTGTCAACTTCACACGGCTGGCGGTGGACCGGGTTAGCTCCCTGGACCAGCGGGCGTACAACATGCTCTTCATCGGCACAGCGGAGGGTTGGCTGCAGCGAGTGGTGATCCTGGGCTCCGAGGCCCACGTCATAGAGGAGATCCAGCTGTTCGAGGTCGCCCAGCCAGTGGACAGCCTGACCATCTCGCACTCCAAGaAGTACTTGTACATCGGCTCTCGTTCGGAGGTTCTCCAGCTTCCCCTGGCCAACTGCAGCCGCTATCAGTCTCAGCCAGACTGTCTGCTCGCCCGCGACCCCTACTGCGCCTGGGACAGCGAGGGGCGGGCCTGCGTTCGCATCGACCTGCACCGCGGGTCCACCTCGTCCCTGTCACAGGACCTCATGCTGGAAAGGTTCAGCCGGGGGAAAGCCAAGTTTGATAAGCCCGTCTCCATCCCCAGCCCTGAGCACTCCCGTCTGAGGAACGTGACAGTGGTGGTGGGGTCCGACATGGTGCTGCCTTGCCAGCTGGTCTCCAACCTGGCTCAGCCCTATTGGGTTCTCAACGAACGTGAGCTCCAGCTGGGTGACCCCGAAGCAGGAGTGCCACGCTTCGACCGCACCCTCAAAGCCCTCGTCGTCCCCCAAGCGGGCCAGATGCAAGCGGGCCGCTACATCTGCTACTCTGAGGAGCAGGGGGTGAAGTTTCAGACAGAGCGATACCAGGTGGCCGTGGTAGCCAGCGCTCCGGTCTTCATGGAGGCCCGGGCTCCAGACAGCAGCATGGGGCTCTTCTGGGTGCTGGTCATCACCCTGGGAGCGGCATGCCTGCTGCTCCTTGTGGCGGCTCTCTACCTGCGCAGGAGGCTGAAGCTGGCCCTGGGAAAGGGAGCCGACATGAAGCCTCTAGAGAGCACCCTGGTCTACCCAATCACCCTGCCCAAGGAGCCGCCCACCTTTGTGCCCAGCAAGATGCCCAGCGACGAGGACCGCTTCTGGGAGACGGGCGCCAACTACTACTACTCGGACGGCTCGCTGAAGATCGTTCCCGGCCACGCCCTGGGGCCCAGCAGCGTCAGCAGCACGGCGTCGCCCAGCGCGATTCCCGGCCAGCCCATCCACTCCCCCAGCCGTCTCAGCCTCACCAACATCCGAGGCTCCGGTAGCAACGGCTACATCCGCCTCAACCTGAGCACAGCAGGGGAGGAGAGGGCTAGCGGGGCTGGCGCTGGGGGCGGCGGGCTGGGAGGCCTGGGCGTGGGCGGGAACGACTACTCCAGCCCCTTCAAGGAAGAGCTGAGACGCacgctgcagcagagaagcgtGCTGCCCGACGCCAACCCCGAGGAGTCGTCGGTCTAGGCCTGTCCTCCTCCGTCTCCCTTTCCCCGagttggaaaaacaaaacaaccgaCCTACCTCCCTCCTTTTGAGGACgcctgctttctctctctctccctctctctttcggTGACACGCTGTCAATTCCCCCATactctctctcgctctgccAATGCCTGTTTGGCTCACTGTTGACATTTATAGCACCAAGCATGTTAAATATACACACTCACCAACATGCACTCGTATAATAATTATGTTCTGGGCAACATGCAGTCATGGTCGTGGCTTTTTCTGCTTCTACTGTGCAATCGCCATTCATGTAAATTGTGTATTTAAAAAACGGCTGAACGCAGGGGAGAACACCTCAAGCATGGAAATCAAACAAATGGCGTTACATGTTGTCTGAAGGGTACATTTCTTTTACGTTGAGTGGACCAAGAGGCTCTTGACCGCCTGTGCTGAAACCAGTTGACGAGCGGCAAGCGCAACGGACTGGAAATGTTGAACTGAACTGCTGTCCTTCTGTCCctttgggactttttttttttcagcttatTGCACTTAAAAACTGGAAGCGCGTCTtccctttttttgtatttgtgagCCAAGAGTGTGAGAGCGGTataaagagactaattaatcaCGAAGCAAGACGACAATCACGTCCCCGTAGCAGGAGCTCTGCgagggacagagaggaggggagagagagcgagagaaaaaaagagagaggaaattaAATGGAAAAATGAAGTGATTTGAAGTAAAAGACGCAAGGGGGTTTTTTGAACGAAGGACAATCTCTCAAGACTTTCTCTGCTcaatttgtatttaattttttatttttttcacgtGGTATTTACCCCCGGAGGACGTCCTTGATCCCTTCTACTTTCATTCGTTGTGATGGTTGGTTTGAATTAAGACATttcttgttgttctttttctacgTCTTACCGACTGCAGCAGTGTTCAAAGCGGTTATCAAGTGACTAATGGCTCCCCTCCGTGAATGACAATGCGAGGGCAAGCGCTTGCATCCAAACGCACCTTCGAGTCCAATATACTACAAGTGCACTCCACGCAACATTTATTAGTGTCTAAGTGTGTGACAGATATGGGTTTTGGCTGAGCCCTTTTGGATGTTTGTTCATCTCTGCAGAAAGAAAAGGCCATTTGCATTCAGCTCTTAGCAGCCGAACAATAACTGGCACACTTAATTCCAAATTGAAGCTGACATGAAGACATTAGGCATGGAGAATGTAGTTGAACCCTCACTGTTGCGACCGCTGTGGATGTCTCAATAAGTGCTTTATGTCGTATGTGTATGGTGAGGGTGGGAACTTGCGCTGCCAAGCAGGAAACtacccctcccacacacacacacacacacacactcacactcacaccccCAGAAACCCCTCCCTCTTTACCGATTCCCAGAGACTGACCTGGGGCTACTGTGGACTTATACAGAGGAAGAGCACTGTAAAACACACCGACACAAAAaagaacacacactcacacacagtgtTAACGGAAGAATGGACATACAGACAGATTTCTGCCGCGCTGACAAACTGCTGGCTCCAGGCGGAAAGCAGCCGTAAACCAGTGAAAGGCCATTCAGTCCAGAATGTGATG

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79954 lncRNA upstream 219881 6334494 ~ 6334791 (+) True G59516
TU79953 lncRNA upstream 220458 6333979 ~ 6334214 (+) True G59515
TU79944 lncRNA upstream 306314 6248069 ~ 6248358 (+) True G59506
TU79942 lncRNA upstream 333816 6220582 ~ 6220856 (+) True G59504
TU79940 lncRNA upstream 362394 6192078 ~ 6192278 (+) True G59502
TU79990 lncRNA downstream 115021 6740664 ~ 6740928 (+) True G59544
TU79989 lncRNA downstream 115398 6741041 ~ 6741289 (+) True G59543
TU80085 lncRNA downstream 189605 6815248 ~ 6815506 (+) True G59627
TU80153 lncRNA downstream 384003 7009646 ~ 7050772 (+) False zgc:65851
TU80156 lncRNA downstream 401655 7027298 ~ 7029309 (+) True G59687
XM_039804197.1 mRNA upstream 513008 6010518 ~ 6041664 (+) True gnb1l
XM_039804198.1 mRNA upstream 513008 6014521 ~ 6041664 (+) False gnb1l
XM_039803939.1 mRNA upstream 559268 5966810 ~ 5995404 (+) True txnrd2.2
XM_039802600.1 mRNA upstream 592600 5817919 ~ 5962072 (+) False arvcfb
XM_039804233.1 mRNA downstream 5948 6631591 ~ 6648978 (+) False cdca2
XM_039804232.1 mRNA downstream 5949 6631592 ~ 6648978 (+) True cdca2
XM_039804230.1 mRNA downstream 5949 6631592 ~ 6648978 (+) False cdca2
XM_039804229.1 mRNA downstream 6328 6631971 ~ 6648978 (+) False cdca2
XM_039804234.1 mRNA downstream 13135 6638778 ~ 6648978 (+) False cdca2
TU79733 other upstream 1056918 5495155 ~ 5497754 (+) True G59347
TU79728 other upstream 1101178 5448136 ~ 5453494 (+) False golga3
TU79729 other upstream 1101178 5448136 ~ 5453494 (+) False golga3
TU79671 other upstream 1203541 5053266 ~ 5351131 (+) False fbrsl1
TU79509 other upstream 2023507 4530110 ~ 4531165 (+) False mrpl41
TU79987 other downstream 49274 6674917 ~ 6677484 (+) False kat6a
TU80145 other downstream 343490 6969133 ~ 6976802 (+) False add2
XR_005639484.1 other downstream 974450 7600093 ~ 7623699 (+) False susd1
TU80342 other downstream 1000164 7625807 ~ 7629074 (+) False zbtb26
XR_005639603.1 other downstream 1059002 7684645 ~ 7684763 (+) True LOC120561481

Expression Profile