RNA id: XM_039803241.1


Basic Information

Item Value
RNA id XM_039803241.1
length 5244
RNA type mRNA
GC content 0.47
exon number 24
gene id jak2b
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 28774899 ~ 28800682 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTGACTTGGGGCTTCGGCTGCGCACGCAGTAGCTACCACTGATAAATTAGCTAGCTTGTCAGAGTTAAAGGCATTCAGTAATAGCTAGATGTCAATAATGTAACTATTGCTGTAGCCACAGTTTCTGGCTCAAGAAGATGATTGCCTGCAGACGAATTCCGTGTTATCGGACCAATTTGTAACCTAGCACGACGTGGttttagctagcattagcttatGTTATTAGATTGACAAGATAAGTTACACGTCTAAAGTTCCTCCTGAGTGCGATGGGTAACGCTAGGCTGACCAGAGGTAGTTTATGTAGCAGGTTAGCCAGCTGAGTGTGACATGGAAATAAGAATATTTCCAGATGGATTTCTGCCATAAAATAAATTGCTTATTTTGGCCTGTAGTCTGAGTACTGGTTTTAAAGAACTGAAGCAGCAGTGTCTGTCCGTAGCTGTCAAACTCTCGCTCGTCCTGGCTGCAGCGCTGGCCTAGGAAGCTAgcagcaagctagctagctgcacgCCTGGCTCATCTACCAAAGTCGGGTGTTGTTGATGGCCTCCCTGCCAGCCATGGATACTGTGACTGACACATGCCCTGCGGTGCACCAAAATGGGACCGCCCATCGGGAATCTCCAGACACAAGGCCAGCCGCTGCTGTTATGAAGCTTCATTTCTACCACAGCAGCCAAGGAGCGGCCGAGTGCAGCTTCCTCAGCTACCCACCTGGGGACTATGTGGCTGAGGAGCTTTGTATAGATGCAGCCAAGGCATGCAGTATATCACCTCTGTACTGCAACCTTTTTGCTCTCTTTCGAGAGCGAGACCGCTTGTGGTTTTCACCCAACCACATCTTCCAGCTTGACGAACTGGCTTCTGAAGATGTGTTCTTCAGAATAAGGTACTACTTCCCTGGCTGGTACAGTGGTGGGGCATCCCGAGCATATCGATTTGGGGTCGCCAAGGGGTCAGAAAGCCCTGTCCTTGATGACTTTGTAATGTCTTACCTCTTTTCTCAGtgGAGGAATGACTTTGTCAATGGCTTAGTGAAGATCCCCAACTCCCATGAGACTCAGGAAGAGTGCCTCGGTATGGCTGTACTCGATATGACAAGAACAGCCAAGGAGAGACAGATATCACCGCTGGACATCTACCACACAATAAGCTACAAGTCCTTCTTGCCAAAGGACATGAGAGCTCGGATCCAGGACTGCAACTTCTTGACACGCAAACGAATCCGATTTCGCTTTAAGCGCTTCATCCAGCAGTTCAGTCAGTGTCGGACCACAGCGCGCGACCTCAAGCTCAAGTACCTCATCAGCATGGAGTCCCTGGAGAAGTCCTTCTACACGGAGACATTCCAGGTCAGGGAACTGTCCAGCGGACAGCTCATTATCCTGGTGGCAGCGGACAGTGGCATCCAGTGGTGTCGAGAGAAACTGAAAGATTCTGACCAGGAGCTGCAGACCTTGTGTGACTTCCCTGATGTCACCGACATCAGCATCAAACGGGCCAGCAGGGAGGGTGCTACAGAGAGTCGGGTGGTCACCATCAACAAACAAGATGGCAAGAATCTGGAGCTGGAGTTCTCCAGCCTATCTGAAGCCCTCTCCTTTGCATCCCTCATTGATGGCTACTTTCGGCTGACGTCAGATGCACATCACTACCTTTGTAAAGAAGTGGCTCCTCCTAGGCTTGTGGAGGCTATTGCTTCCCATTGCTATGGCCCCATCTCAATGGAGTTTGCCATTAACCGGCTTCAGAGGTGTGGGAACAAGCGAGGGTTGTACATTTTGAGATGTAGCCCTAAAGACTTCAACAAGTATTTTCTGACTTTCCCTGTTGAGGTGTATGCTGCTGTAGAATACAAGCACTGCCAGATAACCAGGTCTGCCAGCGGGGAGTTTAACCTTAGTGGAACCAAAAGAAACTTCAGCAGCTTGCAGGAGCTTCTCAGCTGCTACCAAAAGGAAACCGTGCGCTCTGACAGCGTTCTTTTCCAATTCAGCAAGTGCTGTCCACCTAAATCCAAAGAAAAGTCCTGCCTCCTCGTGTGCAGGAGCAACAAGGGCTCTGAAGTGCCACTATCTCCGTCTCTACATCGACACAACATCAGTCAGATGGTGTTTCACAAGCTCAGGAAAGAAGATCTGGAATTTATGGAGAGTCTAGGCCAAGGGACATTTACCAAGATCTTCAAAGGGGTCCGCAAGGAGCTGGGAGATTATGGACTTGTGCACCAAACCGAAGTTGTCATGAAAGTTCTGGACGAAGCCCACAGGAACTACTCTGAGTCTTTCTTTGAAGCTGCCAGCATGATGAGCCAGTTGTCCCATAAGCACCTGATCCTTAactatggtgtgtgtgtctgcggaGAAGAAAATATCATGGTGCAGGAGTATGTGAAGTTTGGTTCGCTGGACACCTACttgaagaagaacaagaacTCGATAAACATCCTGTGGAAGCTGGAGGTGGCTAAGCAGCTCGCCTGGGCCATGAACTTCCTGGAAGAAAAGCATCTTGTCCACGGGAATGTCTGTGCGAAAAATGTTCTTCTGATCAGAGAGGACGACCGGCGGGCTGGGAACCCCCCCTTCATCAAACTGAGTGACCCTGGCATCAGCATCACGGTCCTGCCCAAAGAAATCCTGATTGAGAGGATCCCTTGGGTGTCCCCCGAGTGTGTTGAGGACCCTGCCAACCTGAGCATGGCTGCAGACAAGTGGAGCTTTGGCACCACACTGTGGGAGATCTGCAGTGGTGGGGAGAAACCTTTAGCAACACTGGACAACTCTAAGAAAACCCTGTTCTACGATGACCACCACCAGCTTCCTGCACCAAAGTGGACCGAACTAGCTAATCTGATTACCAGCTGCATGGACTACGAGCCCACATTCAGGCCCACATTTCGTGCCGTTATCCGTGACCTCCACAGCCTCTTCACACCAGACTACGAGTTGATCGTGGACAGTGACATCCTGCCAAACAGGACAGTGGGCTCCGGCTGGTCCACTGGGGGCTTTGAGATGCAGGAGCCGGCTCAGTTTGAAGAGAGACACCTCATATTCATACAACAGCTAGGGAAGGGAAACTTTGGCAGTGTGGAGATGTGTCGATATGACCCGCTTCAGGACAACACTGGAGAGGTTGTGGCTGTGAAGAAACTCCAGCACAGCACTGCAGAGCACATACGAGACTTTGAGCGAGAAATTGAGATCCTGAAATCTCTGCAGCATGAGAACATCGTCAAGTACAAAGGCGTTTGCTACAGTGCAGGAAGACGAAATCTCTGTCTCATCATGGAGTATCTGCCCTTTGGAAGTCTGCGAGATTACCTCATGAAAAACAAGGAGAGGATCGACCACAAGAAGCTTGCGCATTACATGTCACAGATTTGCAAGGGTATGGAGTACCTGTCAAGTAAGCGTTATATCCACAGAGACCTGGCAACACGAAATATCCTCGTGGAGAGTGAGCTGAGAGTGAAGATTGGAGATTTTGGCCTCACCAAAGTTCTGCCTCAGGATAAAGAGTACTACATGGTCAAAGAGCCAGGGGAGAGTCCCATATTCTGGTATGCCCCTGAGTCGTTGACTGAGAGCAAGTTCTCTGTGGCGTCAGATGTCTGGAGCTTTGGAGTGGTCCTTTATGAGCTCTTCACCCACAGCGACAAGAACTCCAGCCCTCCTGCAgtttttatgtCCATGATGGGAAATGACAAGCAGGGACAGCTGATCGTCTATCACCTCATTGAGCTCCTCAAATCAGGCAGCAGGCTGCCTCAACCTCTGGGGTGTCCCACAGAGATACATGAGATCATGGAGGAGTGCTGGGACAACGACCCCGGCTTGCGTCCTTCTTTCAAGGAGCTCGCCCTGCGCATCGACCTGTTCAGGGACAGTAAGGAGTTTTAGACAGAAACATTACCCAAAGTGGTCCTTCTCCTGCTGAGTGCCAGTGTGTGGCAAAGCAACTTGTGACTGGAAGAGTGGTGTTTGGAAACAAGGACCAGCATAAAAAGTAAAGGTGCCTTTAGGCAAGGCACTAAACTCCCATTTCTATAGTGGAGTGGCATAGTGGCTAGCAGCAGAATGGAAATGGAGACTTTGATGCAAAGAACTGTTAAAGTGATGTTGGTAGGTGATGTTCGTTCTGTCCAAAATGCGTGCAAGagagtgtgcgtgcgtgcctccgtgagagagtgtgtgtgttgtgtccataTAAACGGCTAGCAGGGCTAGCTCTCGCCATCCCCTTTTCCCTTCACCTGAAGAGAAATGGTCTAATAGAGCCGATTGTGttctatgtatatgtgtatatacctACAGTATATTTGTGTACATATgtccagaattttttttataattttataaaaaaagaaaatatggtAAAATACTATATTTGAACTGCTACATGATGTCAGTATAAATGAAGTACATACAAAGGTGATTTTAAAAATCAgttattgttttatgttttcattGTGAGTGGGGTGTGAAAATTAAAGAACAATTTAATTGGTGCCCGAGCACCGACTATGTCGGTCAGCAAAGGTCCTATTGAAATTGGAAGGCATTCCGCATATGTATCACCTCTAGACTTCAACAAAAACCTCATGGAGCCGTCTCCTAAACCCCACAGGAAGTCAGCCATATTGAATTTGCTGTGCAATGTTTGGCCATTTTTGACCATTTCCAGGGGTTGCACATGACATCCTTCTCTTACAGATTTAACAGGACTGATTTCAAAATTGTTAAGTACAATCTAAAGACCTTGGCAACATTGCAAAGATTTTGAGTTTTCAATTTATATCTGTTAAGCAAATTCTTGTTTTTGCTTTGAAACTCATTTGAgctcattattatattattatgattattatacagtataaataaatgtGCTATTGAAACAGCACACTGTGTACTGTGTGACACCAAAAcctaactaagtacattttatCAAGTACTGTACTCTAGTACAAGTTTGAGGTATTGAGAATTTCCACTACTTTATagttctactccactacatctcagaggtaaatattgtacgttttactccactacattatcTGActgctttagttactttacagattacagtttttcatcccctttcctgtccagtgaaaaccatgtatctccaggTGTGTTgattttgaatgtttgtgataaactgaggGATGAGGTGTTCATTTGTGTTGAGAAAATTTTCATACTTCTGAAGCTAAATAAACTATTTGAAAAACC

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0005856 cytoskeleton cellular_component
GO:0016020 membrane cellular_component
GO:0042393 histone binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG:

id description
K04447 JAK2; Janus kinase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87533 lncRNA upstream 8674 28766020 ~ 28766225 (+) True G65396
TU87531 lncRNA upstream 18706 28755865 ~ 28756193 (+) True G65394
TU87522 lncRNA upstream 153600 28621085 ~ 28621299 (+) True G65385
TU87515 lncRNA upstream 311795 28462625 ~ 28463104 (+) True G65378
TU87497 lncRNA upstream 403058 28371456 ~ 28371841 (+) True G65362
TU87555 lncRNA downstream 14572 28815254 ~ 28815476 (+) True G65417
TU87556 lncRNA downstream 15503 28816185 ~ 28816400 (+) True G65418
TU87569 lncRNA downstream 44944 28845626 ~ 28847247 (+) True mboat4
TU87618 lncRNA downstream 184931 28985613 ~ 29002180 (+) True G65473
XR_005639509.1 lncRNA downstream 272259 29072941 ~ 29131216 (+) True LOC120560778
XM_039803645.1 mRNA upstream 352856 28117914 ~ 28422043 (+) True si:dkey-215k6.1
XM_039803263.1 mRNA upstream 695996 28034779 ~ 28078903 (+) True aacs
XM_039802373.1 mRNA upstream 773877 27986123 ~ 28001022 (+) False si:dkey-164f24.2
XM_039802371.1 mRNA upstream 773877 27986124 ~ 28001022 (+) True si:dkey-164f24.2
XM_039802372.1 mRNA upstream 773877 27986125 ~ 28001022 (+) False si:dkey-164f24.2
XM_039803242.1 mRNA downstream 6671 28807353 ~ 28812996 (+) True zgc:114041
XM_039804022.1 mRNA downstream 46413 28847095 ~ 28849471 (+) False mboat4
XM_039802531.1 mRNA downstream 59829 28860511 ~ 28873349 (+) True LOC120560259
XM_039802532.1 mRNA downstream 72960 28873642 ~ 28879999 (+) True mfsd10
XM_039802533.1 mRNA downstream 73092 28873774 ~ 28879999 (+) False mfsd10
TU87117 other upstream 1473129 27205234 ~ 27301770 (+) True G65084
TU86927 other upstream 2116930 26645020 ~ 26657969 (+) False si:dkey-178e17.1
XR_005639500.1 other upstream 2132418 26614237 ~ 26642481 (+) False cltcl1
TU86791 other upstream 2278571 26494335 ~ 26496328 (+) False c6h22orf39
TU87830 other downstream 549442 29350124 ~ 29351753 (+) False ubac1
XR_005639517.1 other downstream 1386166 30186848 ~ 30212108 (+) False fbxo21
TU88038 other downstream 1446205 30246887 ~ 30250240 (+) False LOC120560820
TU88040 other downstream 1447257 30247939 ~ 30250268 (+) False LOC120560820
TU88039 other downstream 1447301 30247983 ~ 30251519 (+) True LOC120560820

Expression Profile