RNA id: XM_039803262.1


Basic Information

Item Value
RNA id XM_039803262.1
length 3698
RNA type mRNA
GC content 0.48
exon number 18
gene id LOC120560598
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 25601156 ~ 25622051 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttctctatcactctgtcCCAACCTACTCTGGATTCATTGGGATTGCTCTAACTACTAAGCACGGGGGCAGGTTTTTTAGTACTGGATTATTGGATATATTTAGCGGATACATTTTTAACAGCACTGAAAAGGATTTCTTGCTACATCAGAGGGCAACCTGTACTGTCTTGCTCTCAGGATGTCTAGAATGGTGTTGCTGTAGTGGAGAGGACCACCACCGTACCATCTGCAGACAGTGACCTGGCCAGTTAAACACCATGCCTCGCTTAAGTGTCAGTCCCAGCTCAAAGCCTAACTGTAGCCCTGTCTGGCTCATCTCTGTTCTCCTGGGCCTCTTGGCTATACACACTAATGCCAAAGATGtCCTTACTGTACCCCAGCAGGTGATCCTGTCAGCCAACATGTATACACAGCATCTAACCATATCCTGGCTGGGGGGAGCAGCCACAACCTTTGACCTCATGATTCTAAGAACTGAACTCAATGAAACTGTCTTCTATGAGACGGTGTCTGTGACGATGAATCAGGTGAGTGGTCGGCACCAGTGGAACTGGACCTCAGTTGAACCTCTCGAGTGTACCTCGCTGTCGATCAAAATCCGCTCACGAGATGGACAGACAACAAGTGAATGGAGCAACACTCAGATACTTCAAGGAAGTGATCTCCCGAGCAATGAGAAATTCCAGATGTACCCCCAGGACAGAATTGTACCTGTGGGGGCCAACACCACCTTCTGTTGCATTGTGGAAGAGGGGTTGCTATTTGGTACCATCCGCTATGGCAACACAGTCATGAACACAACACGGCTAAGTAGGCGAAGTTTTGCCACTACAGTGGTTAATCAGGAACTTTCCGGCGAGACGGGAACCAACGTCGTCTGTTTTGACAACCTGAGGACAAAGCTGACTGGAGCAGTGGTGTTTGTTGGATATCCACCACTGCCCACTGATTTTGTGTGCGAGACTCGTGACTTAACCTCAGCTGTGTGCCAGTGGAAGGAACAACGAGACACGAACTTGTATAGAAAACGAGGAACACGCTACTCGCTGAACAAGAGGAACTGTACTTTGAGCAGCCCAGAGGAGAAGCAGAAAGAGTGTAGCGTGGCCCAGTGGGAGGGTAACTTTACACTGGTAGCTGTAAACCCTCTCGGCCAGTACAGCCTCACTGATTCTGCTGAGATCAATCACAGAGTGCACCCAGTTGCACCAGATAACCTAACCTTTGTTGTCCATGCCTGGAATGCCACTGTGTTGTGGCAATGGGAGTACAAGAGCTATTCCTCTTTGGCTCTTGACTGCCAGGTAGAGCTTGCCTCCCAAGGATACAAAACaaggggtggtgtGATCAATAATGAACTTTTCATGTCATCTTTTTATTGCTCTGTTTCAGTAGAATTGTCACTTAATTGCAATTACAAAACAGCAGcagtagtttttttctttttcattttttctttttcatttgtttttgcttctCTCGTTCCAGATGCTCCTGATGTGTGGATGTGGATGAACAAAGACTACACTGGGCAGGTCATTTGGAAgCCtctgacacaaagacagagcCATGGTCTGATCACAGGTTATGAAGTTACTCTCTGGAGCCCAGAAGTAAATTTCCAGCACACAGAATTGTTTTCACCGGACACTTATGCTGTACCAGTCAACCTCACCCAGATCGCTACCCGTAGCAGTGACAACAAGGTCATGGCAACCGTCATTGCAAAGAATGCTGCTGGGGTGTCTCAACCTGCAAGTGTACTGATACCTTTACGTCTGACAGATGTGGAACCCTTTACTGTGTCCAGGGCAGTTTATACCGACAGAGGTTTCCCTCTGTTCTGGCAGCGCAATCCCAACGACACCTGTGCTTATGTGGTAGAATGGTATGAAGCTTCCTGCAAGTGGGACTGCCCTGTGGAGTGGATCAAGTTGGCCGCTGGAAACACTAATGTCACCATTAAGTCAGCCAACTTGCAGCCGGGTGTGAGGTACAACATTTCCCTGTACAGTAGCTCCTCAGAGGCCCCAGAGCTGCTGCAGCATTGGCAGGGATACATGCAGGAGCTGGTCCCTTCCAGTTCTGTCCTCCTGTCAACCACTCAGCACGACTCTGATATTGTCCTTACCTGGAGAGAGATCCCGCTGGTCAACAGAAGAGGCTTCCTCCTGGGCTACAACATTTACATCAGTGGTGGCTCCCAGCTCACACTTCTAGCCAATCTGTCAGATCTAGAAAGCAGGAGCTACACAGTAAAAGGTCTCTCTCAAGGCCTCTATAACTTTACTGTCAAGGCCTACACCTCAGCAGGCGAGGACAAAGGCACCACTGCTTCCATAACGCTGGAGCCATACACGGATTGGCTGATCCTGGAAATCTTGGCTTCCCTGGGAATCATAGCCTTACTCCTGGCCGTTGTCACCTTCATTTGctacaagaaaagaaaatgGGTGAAAAAGGCGTTCTATCCAGACATACCTGAGCCCAAGCTGTCTGGTGATTGGTCCAGGTCACAGGGGCCGTTGAATGTGAAGCCATCTCCCCACAGTTTGGTCCATATGGTAGAAAAGCCTGAGTGGGATTCTAGTAAAGAAGTGCTCGTTGTCATTCCTGAAGAAGACGAGTTTGAAGGAGACGAGCCAGTTGACACAGATGAGCCAACGTCATTACGCTACTACAACCAAGTGGTAGATGAGCGGCCCATAAGACCACGTTTCCCAGACTCCTCAGATTCGTCTGCATCTTCTTTGGATTCAGCATGCACCGATGTGACGTACACCGGGATCCAGACCTCAGGGTCTTCTTTGGTCTTCCAGCTGGATCCACAGGGCTCTTCTGAGGGCCAACAACCCCAGGctgatctgtctgtctgtggaggaggaggaggaggttacCGGCCCCAGATGCAATCTAGAGCCCCAAGTGATGACATAGGCCTAGCATCACCTGAGCCTTTCCTAGAGCCCCAGGCTGCCAGTGCTGGGGGCTACAAACCCCAGAGCTCCTGGCATTTTGACTCCCCCGTAGATGCTGGGGAAAGTGGGGGGCTGGCACTGTCTCTTGGATCCCCCACCTCAGTTGCTTCCACTCAGTTCCTCCTCCCTGATGGAGAGGAACGTGCAGAGGAGCAACGACAGCCGTCATCATCGGCAGCAACCTGGTTCACCAACCTACTGTCATCCACAAAACCATGatatcatctctctctcactagTAGCAGCCaggccaggggggggggggggtttaacaTAAAACTTTCAGATTCATTACTGTGGCATGACTCAAACAAGCCTATCAGAGGGGTAAATATCCCCTCTGATGTAGCACTACATTCTTACAGCTGTACTTTAACAACAATAATGCTATTTAAGGTGTTATGATGTAGTTAATTTTCTCGGTCATgcaaattataaatataaattggttaaagatgcaccgatagatgtccgcgctattcttgcacatgtagggaacctcgtgaattaacctgcaacatgtcggctgtttggaaattcttcagcgtgtgtgcagaagataacaagtttgcaatatgcaacacctgcaaggaaaaagtagggtgTGGAAGGACTACACTaaaaacccaaatcacatttttttagttggatgtgaaaagaaggaaatggttctaacattgcactttagatgtgtgtgaatttccaacaccaggagtaat

Function

GO: NA

KEGG:

id description
K05058 LIFR, CD118; leukemia inhibitory factor receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86363 lncRNA upstream 45375 25552939 ~ 25555781 (+) True G64495
XR_005639499.1 lncRNA upstream 48892 25548023 ~ 25552264 (+) True LOC120560635
TU86357 lncRNA upstream 49659 25548151 ~ 25551497 (+) False LOC120560635
TU86352 lncRNA upstream 94588 25506164 ~ 25506568 (+) True G64489
TU86313 lncRNA upstream 298236 25259716 ~ 25302920 (+) True G64450
TU86472 lncRNA downstream 40976 25663027 ~ 25663385 (+) True G64578
TU86493 lncRNA downstream 75012 25697063 ~ 25699784 (+) True G64592
XR_005639536.1 lncRNA downstream 91859 25713910 ~ 25747889 (+) True LOC120560927
TU86515 lncRNA downstream 166406 25788457 ~ 25795441 (+) True G64607
XR_005639405.1 lncRNA downstream 217085 25839136 ~ 25843093 (+) True LOC120560032
XM_039804190.1 mRNA upstream 28049 25567704 ~ 25573107 (+) True cdo1
XM_039804191.1 mRNA upstream 28049 25567705 ~ 25573107 (+) False cdo1
XM_039804192.1 mRNA upstream 28049 25568565 ~ 25573107 (+) False cdo1
XM_039803025.1 mRNA upstream 156016 25336024 ~ 25445140 (+) True sema6a
XM_039803026.1 mRNA upstream 156016 25336024 ~ 25445140 (+) False sema6a
XM_039804389.1 mRNA downstream 3953 25626004 ~ 25645818 (+) False spef2
XM_039804387.1 mRNA downstream 3954 25626005 ~ 25646477 (+) True spef2
XM_039804390.1 mRNA downstream 3954 25626005 ~ 25646477 (+) False spef2
XM_039804388.1 mRNA downstream 3954 25626005 ~ 25646477 (+) False spef2
XM_039803611.1 mRNA downstream 25064 25647115 ~ 25653156 (+) True LOC120560771
XR_005639471.1 other upstream 766525 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other upstream 766536 24823719 ~ 24834620 (+) False cdc14b
TU85875 other upstream 1907865 23692662 ~ 23693291 (+) True G64108
TU85622 other upstream 2670951 22929899 ~ 22930205 (+) True G63905
XR_005639510.1 other upstream 4002357 21588876 ~ 21598799 (+) False LOC120560787
TU86491 other downstream 62921 25684972 ~ 25696570 (+) False LOC120561182
TU86550 other downstream 292331 25914382 ~ 25915529 (+) False LOC120560031
TU86770 other downstream 790818 26412869 ~ 26414597 (+) True G64814
TU86790 other downstream 872284 26494335 ~ 26496386 (+) False c6h22orf39
TU86791 other downstream 872284 26494335 ~ 26496328 (+) False c6h22orf39

Expression Profile