RNA id: XM_039803263.1


Basic Information

Item Value
RNA id XM_039803263.1
length 4491
RNA type mRNA
GC content 0.44
exon number 18
gene id aacs
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 28034779 ~ 28078903 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGACGCGACAAACATGTCTAAAGACACGGAAGGGAAGAGCGAGAAAATTATGGATATGGAGAGCAAGGTGTTGTGGTACCCGGACTCCAAGAGGAACACACATATGGACAAGTTTAGGATACAGGTCAACAGGGACTACGGTCTTAATCTGGCCAACTACAATGACCTGTACCAGTGGTCGGTGGACAGCTACCCAGATTTCTGGGCAGAAGTGTGGCGCTTCTGTGGAGTAGTCAGCTCCAAACCATATGAGGAGGTGGTGGATGTATCCAAACGGATCTCGGATGTCCCACAATGGTTTAAAGGAGCTCGGCTCAACTACGCTGAGAACTTGCTCAAACATGCAGACCAGGACAAAGTAGCTCTTTATGCTGCAACGGAGGCAAACGATGAGATTGTGAAGGTGACATTTGGGGAGCTGAGGCGCGATGTGTCATTGTTTGCTGCAGCCATGAGAAAGATGGGCATCCAGACTGGAGACAGGGTTGTAGGCTACCTGCCCAACGGTATCCATGCAGTGGAGGCCATGTTAGCAGCAGCCAGCATTGGAGCCATTTGGAGCTCCACCTCTGTCGACTTTGGAGTCAACGGTGTCCTTGACAGGTTTTCTCAAATCCAGCCCAAGTTGATCTTCTCTGTTGCCGCTGTGGTTTACAACGGCAAAACACATGACCACATGGAAAAGCTGACCAGTGTTGTCAAAGgtCTGCCtgacctgcagaaaatagtggTGATTCCCTACGCTCGCTCCAAACAGGAGACTGACCTCTCCAAGATCCCCAACAGTGTATTTATAGATGATTTCTTGGCATCTGGGCGTGGTGAGGCCGACCAGTTTCCGCAGCTGGAGTTTGAGCAGCTTCCGTTCAGTCATCCCCTGTTCATCATGTACTCTTCTGGCACCACAGGAGCTCCTAAATGTATGGTCCACTCTGCTGGgGGCACGCTCATCCAACACTTGAAAGAACACATTCTCCATGGCAATATGACCAGCAGTGATGTCATCATTTACTACACCACGACCGGCTGGATGATGTGGAACTGGCTGGTGTCTGCTCTGGCAGTGGGTGCCTCAGTGGTTTTATATGACGGTTCACCACTAATGCCCACACCCAGTGTCCTGTGGAACCTGACAGACCAGCTGGGTATTACTATCTTTGGTACCGGGGCCAAGTGGCTGTCTGTGCTGCAGGAGAGGAACCTGAAACCCGCGGAAACGCACAACCTCCAGTCTCTCCACACCATCCTGTCTACTGGATCTCCTCTCAAACCTCTGAGCTACGACTACGTCTACCGCTGCATCAAGAGCAACGTGCTGCTGGGCTCCATCTCAGGCGGCACTGACATAGTGTCATGCTTCATGGGCCAGAACCCAACAGTTCCAGTGTACCGGGGCGAGATCCAAACAAGAAACCTCGGCATTGCTGTGGAAGCTTGGGGCCTTGACGGTAAACCCGTATGGGGAGAGAGTGGCGAGCTAGTCTGCTTGAAACCAATCCCCTGCCAGCCAACACATTTCTGGAATGATGAGAATGGGATCAAATACCACAAAGCTTACTTTTCTACATATCCTGGGGTATGGGCCCACGGAGACTACTGTAAAATCAACCCAAAGACAGGAGGCATTGTCATGCTGGGCAGAAGTGACGGTACATTGAACCCCAACGGAGTCCGATTTGGCAGCTCAGAGATCTACAACATTGtGGAGGCGTTCGAGGAAGTCACAGACAGTCTTTGCGTTCCTCAGTACAATGCCGACGGAGAAGAGCGAGTTATTTTGTTCTTAAAGATGGCACCTGGTAGGCCCTTCTGTCCGGAGTTGGTGTCAAAGATTAAAGGAGCCATTAGAAAAGCTCTGTCTGCCCGACACGTGcctgctctgctgctgcagaCTAAAGACATTCCTTACACCATCAGCGGGAAGAAGGTGGAGGTggctgtgaaacaggtgattGCTGGCCGGGAGGTGGCACAGAGAGGAGCTTTCTCCAACCCTGATTCGCTGGATCTCTACAAGAACATTCCTGAACTGCAAAACTATTAGAGATGAGGCTTCACTGAGCTGGAGGAGAGGACCTGCAAAAGAGAACCACCTGTCAAGAATTCAGCTTGGTTTTTAAATTGACTTTATTCAAATGTACGGGGAACAGGGAGATATGCATAGATAAGCGCATTGCAGGGGTAGTTTCCAAAGGCCACCATGAGCTTTGTACAGGGcatataaaaaggaaaaacaaaagtgtgtgtcaaaataatacaaaaatggtacaaaaaaatatatgtaactATAATAATGTGTATGGTATCAGGCAGACGAGAGACTTTAAAAACATAAGTTGTACTGCGCCATTGTCTTTGCTTTAAATCAAATGATCAAGCAGCTGCTCTCGGTTTACCATGTTGTGCAAGTAAATGTTGGATGCTGGATTCTGCTTTGGATATAATATGATGTGCACAGCAGCACTTGTGAATACGCTCATGCTCTGAAGACACCAGTAATGGAGAATTTTGCATCAAGTGCTTTACATTCTGATTGCAATCAGCCAGTAAAGAACCACATCTCTCTTGTGTCCCCTGCTGTAAGCCCAGCGTTGGTTCGGAGTGGGTCCCAGACTGAAAATCCAAGGAAGTgtgcagataaacacacacacacacacaaacacctgggATTAACACCTCAGCTTTGCCTCATATCACCATTTCATTGTTATGTGGTGCGTATTGCTTCATCAAATGTACAtaaatgatttttcttttttttgggactGTGAAATGATGTTAACATTATAATTATGCATTTAAATATAGTGACCCAAACGTCTCAGATTTAGAGGGTCTTAACATGTCAGGAGTTGTAGTTTGAATAAATGAAACGGGAGATTCCAGATGAAACTAAATTTACTGAACCTTTCCCGACCTAAAAAGTTATTGCTCTCTTGTGTATTACATACTTAACTCCTAACAATGATTTGACTTTGTAACCATTGAATCTGTTTCATACCGCCCAGGACATGAAGGCATGAATTGATGAAGTTCtccgtacgttttttttttcagtcacattggccctcatttattaAGCTATTGTACAAACAACTCTAAAGAGCAAATGGTCATTCCACTGCAAAAGCctgtatttattaatttcatatcTATGTTCAATGTTTGTCATAACTGTATGAGAAATGTGCTCTCTTCAAATAGCTACAGTACAGCCGGTTTTTACTTTGTACATGGGAAAGCTAAATGATCTACCCCTAATTTCGTCAAGCTGTGTGGCAAAGCCTAAAGGCTCAGTATTAAAGATGAACCACAGTGGTTTGGTCACTAATGCTGAGCAACACGGGTGTACAATAACAAAAGTCACTTGGGTTTAATTTCCTGTTGAAAGAAAAATCACAGtcacagatatacagtacatgtcagACGCATTTGATCTTTGGAGAAAAATGAAGCATTTTATACTGATACAGTGGTAGCATTTTTCTTACTGGACTGGTTTTTCTTGTTTGGCTTTTGATTCAGTCTTTGTCACTTGTTTCCAGATTATTTTAAACCTGTTTAAATGTATGAATGTTGACAAATCAACTCGAAAATTCTGTGGTTCATCTTTAATGTCACTGCTTAGATTGAATCAATTTCCTATTTAAAGGTACTCTGTGGGAGGTTTTGACACCTTGCAGCACTATGGGGCGATATTTTGATGAGTGGGTCCACATTTTGTTTGTATCTTGTGAACGCTGGTGATGGGATAAATATTCCTTCCAAGGGTGTCGCACTATTCCACAGATTGACAGGTGGCGGTAATGTTTTAAGAAAAGTAGCACTGCACCAGTCAAATGCGGGGGCGAAGAAAACTGCAAGCCAGcgaacatggatgtaaacaatgtaGGTTTCAATTAAATATACGAATGACTACTATAATAATGTTGGAAGTTTACAGAGCCATGAACTTGAGACTTGGTTGGAGTCCAGTTCCTCGATGTAAAAAGTCTCACTAATCTGGTGTTCTAGGATTTTATTTATTCCTAACTTTAGTCATTCAAAACATGAGAAAATGCTTTATTGGCATCCTGTCGGTGTGCAGAGGACATATGAGGGCTGCAGAAATGAGGAGTGTGGGTTGAATGTAGGAATGTTGTCAAATGAAAAGCTGTGAAAAGTGTTCACAAATAATAACCATCTGATGAGCATGAATGGTAAGTTCCATGCAGTCCCCCAGAGaggctgtgtgttgtgtgattcATCCCAGTAGTCTTATAACAGAGCACATCACAAACTAGAAAATGACTTTGTAATGGCTTGATTGTACCTTGTACTTACAAGGGTTGACGGTTAATTAATTCTCGGTGAAAtcaattttaaatataaattgaAGCTGACTAAATATAGACTGTTTATTCTCAGTTATATTATAAACTGACCTGTGGTGCTTAAGTAGCCTAATGTGTTTTCTTCCATACTGCGGACGATTAAATGTGTAAACTGA

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0030729 acetoacetate-CoA ligase activity molecular_function

KEGG:

id description
K01907 AACS, acsA; acetoacetyl-CoA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87444 lncRNA upstream 29658 28002539 ~ 28005121 (+) True G65314
TU87374 lncRNA upstream 129846 27903075 ~ 27904933 (+) True G65272
TU87249 lncRNA upstream 557813 27476748 ~ 27476966 (+) True G65171
TU87150 lncRNA upstream 644917 27389457 ~ 27389862 (+) True G65108
TU87147 lncRNA upstream 655564 27378998 ~ 27379215 (+) True G65106
TU87497 lncRNA downstream 292553 28371456 ~ 28371841 (+) True G65362
TU87515 lncRNA downstream 383722 28462625 ~ 28463104 (+) True G65378
TU87522 lncRNA downstream 542182 28621085 ~ 28621299 (+) True G65385
TU87531 lncRNA downstream 676962 28755865 ~ 28756193 (+) True G65394
TU87533 lncRNA downstream 687117 28766020 ~ 28766225 (+) True G65396
XM_039802373.1 mRNA upstream 33757 27986123 ~ 28001022 (+) False si:dkey-164f24.2
XM_039802371.1 mRNA upstream 33757 27986124 ~ 28001022 (+) True si:dkey-164f24.2
XM_039802372.1 mRNA upstream 33757 27986125 ~ 28001022 (+) False si:dkey-164f24.2
XM_039803843.1 mRNA upstream 68350 27962610 ~ 27966429 (+) False si:dkey-283b1.6
XM_039803842.1 mRNA upstream 68350 27963646 ~ 27966429 (+) True si:dkey-283b1.6
XM_039803645.1 mRNA downstream 39011 28117914 ~ 28422043 (+) True si:dkey-215k6.1
XM_039803241.1 mRNA downstream 695996 28774899 ~ 28800682 (+) True jak2b
XM_039803242.1 mRNA downstream 728450 28807353 ~ 28812996 (+) True zgc:114041
XM_039804022.1 mRNA downstream 768192 28847095 ~ 28849471 (+) False mboat4
XM_039802531.1 mRNA downstream 781608 28860511 ~ 28873349 (+) True LOC120560259
TU87117 other upstream 733009 27205234 ~ 27301770 (+) True G65084
TU86927 other upstream 1376810 26645020 ~ 26657969 (+) False si:dkey-178e17.1
XR_005639500.1 other upstream 1392298 26614237 ~ 26642481 (+) False cltcl1
TU86791 other upstream 1538451 26494335 ~ 26496328 (+) False c6h22orf39
TU87830 other downstream 1271221 29350124 ~ 29351753 (+) False ubac1
XR_005639517.1 other downstream 2107945 30186848 ~ 30212108 (+) False fbxo21
TU88038 other downstream 2167984 30246887 ~ 30250240 (+) False LOC120560820
TU88040 other downstream 2169036 30247939 ~ 30250268 (+) False LOC120560820
TU88039 other downstream 2169080 30247983 ~ 30251519 (+) True LOC120560820

Expression Profile