RNA id: XM_039803266.1


Basic Information

Item Value
RNA id XM_039803266.1
length 5931
RNA type mRNA
GC content 0.48
exon number 22
gene id tsc1a
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14600261 ~ 14625197 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTCGTTTTTCACATATTCTGCTCCCGCACTGAACGCCTCCTGACGTTGATTGACAGGCAAAGGGTGGGCGGGTTTTCGTGTTGCTCAACATGGCTGCGCCCTGCTCGGATCAACAGGTCTAAAGGTGTTCATGATGTCCAGTCAGCAGGTAAGTATCAGTGAGCTCCTGCTCTCATTGGACAGTTCAGAGCTGCAGGAGGTGGAGCAAGTCAGAGCAACAGTCAATCAGCAGCTGAGTACTGACAGAGGAGGTGCTGTTCTCTCCTCTCTGGTGGAGCATTACCTGGACTCGTCCTCCTCTCAGGTGGTGCTCCTACTCTCCTCCATCAGAGAGCCTCATCACAAGCCCCTGTTGGAGAAGCTGAATGAGTCTCTGAACAGACCTGGATCCAGATTGGCTGGTCTGACCCTGCTGGGGGACCTGATCAGGAAACAGCCTCCCTGGGTTCATCATATCAGCCGCTCGGCTCTGCTGCTCTCCCTGCTGCGCTGCCTCAAGACAGAGACCGACGTGGTGGTCCTGATCACCGGAGTCCTGGTCCTCATCACCCTATTACCCATGATCCCTCAGGCCGGGAAACAACACATCTACGACTTCTTTGACGTGTTCGGACGCCTCGCCTCCTGGAGCTACAAGAACCCTGGTCATGTACCTGTGGTCCACCTGGTCCACCTCCATGCAGGTGTGTACTCTCTGTTCCACCGTCTGTATGGGATGTTCCCCTGTAACTTCATCTCCTACCTGAGGCTGCACTACAGCATGAAGGAGAACCTGGACACCTTCCAGGAAGTCGTCAAGccgATGTTGGAACATGTCAGGGTTCACCCAGAGCTGGTCACAGGGACCCAGGACTATGAACTGGACCCGTCCAGGTGGAGGTGTTATGAAGTCCATGACATTGTGATAGAGTGCTCCAGAGTGTCTCTGGATCCTCTGGAGTCTTCCTGTGAGGAGGACATTTACTCCTCCCTCAGagaccctcctccctccccctccccccttaaCCTCACCTCCAGTCCTTACAACACAGAGACTGTCAGCAgctcagGAAGTACAGTTTGTCCTCTACTGCTGTCTGGACCTCCCACTCTTCCTCAGCTGACACTCAACAACTCCTACATACAGGCTGATGATGTCACATGGAGTCCCTCCTCACAGTGTGGTTTGTCGACACCCCCTGCTGAAACTGCTGCTACAGGCACCGCCCACCCACTGAGCAGGACCGCCTCCATCTCAGGTGTAAAATGTCCCTCATCAGTCATCGTCCCAGTGACACCGCTGACTAAAGAGAACCAAAATGGTCTGATTCCTGAGAAAAACCAGGTGAAGCTGGTCACAGAGCTACAGGGGTCATCCgttcagccaatcacagagaaGGAGGGAAGAGGCCAGAGCGATGTCATCAATAACATCTGTGAAGACACCAGATCCCAGcagccttcctcctcctcctcatcctcctcctcctcttctcatcCTGTCCTCCTCACCTCCACCCCCGGTCGTGATGAGCCGTCGTCAGGTTCAgccctctcctcttctccatGCTCCATCTCACTCTGCTTCACCCCCCCtcacccatccaccaccacacacagatCAGAGGAGGGAGGCTCCACCCTGTTTGGCTTCTCGGGTCAGAGCTCCGCCCTTTCGTATGAACCCCTGTTTGAGCTCGCTCTTCCCCGAGCCGCCACGCTGTTCATCGGGAGGATGACACAGGAGGCGCTGGAGAGAGCAGCGGGGGGGCAGgaggggaaggaaggaggaggacgaggacaaagggaggacagagaggaggagcagaCCTCCGTCTCTCCTCTAAAGGTTTTGGATCAGCTGATCGTCCACGGACACGATGCCCATGAACACCTCAGCAGGAGgttgtCAGCAGCGAATAACTCGGTGGATCGGAGTCATTTTGGAGGCCCCGCCCAGGGGGAGGAGCTTCAGTCTCTGAGAAGTCAGCTGTTATTGGTCCACAGTCAGCTGCAGTATGAACGATTCAAACGGCAGCAGCACGCCATCAGAAACCGCCGTCTGCTGCGAAGAGTTATTAACGCCACCTCGCTGGAGGAGCACagcgttgccatgaagGGTCAGCTGAGCGTTCAGGATGAAGAGATTCGCTCGCTGAAGTCTAGTCTGCAGGAAGAACAGAGGCAATACACACAACTGCAGCaggacacccacacacacaccgcccagctgcacacacacatccaacagctgctgctgcaacaacaaGACGAGCAGAGAGACAAGCAGAGGTTGAAGAGCGAGCTTCAGGAGTGCCAGAGCAGGCTGAGGGATCTGGAGGTGGAGCTTCAAAAAGCCAATAACAAGGCTTACAATGCAGAACACCAGCTGACTCAGCTGTCACTCAAGttGTGCAGCAgtgagcagctgcagcagcagatctTCCTGTTGAACCAGCAGCTCATCCTGCTGAGAGAAACTAACCGAGCTCTGAGTCATCAGCTGGATGGAGGAGAGACACACCACCGCACTGAGGCGTTCATGCTGCAGTGCAGTGTGGGTAAAGAGCACCAGCGGCTAAAGGACAGCGACGTCCAGCAGAGACAGAAGCTGGAAGCAGCCAATTACAGGATAGCAGAGCTGGAGAACCAGCTGGCCAAGAAAGAGCAGCTGATTCTGGATCAGAAGAAACTTCTGGAGGACACAAAGGCCCAGAGCAGaGCCGAGCTGTCGGCCTGTGAGAATCGCTGTGTCGCTCTGAGGAGAGTCACCCAGACGCTTCAGACGGAGACTCTTCACCTGTACAGCCAGAtccacctggacacacacaacgacacacacacacacagctggcctCAGGACATCAGGCCAAACGGCGGCAGCGTCGCCCTACCAGCTCCTCAGGGCAGCCACAAGACCCACCCCTCCACTTCTTCTACTTGTGTTAGTATAATAAACGGAGGTGTGGAGACCCTCTCCACCTCCCCATTGCACCTCCCCTcttgctcctcctcccccctttccCACTCCCCTATCGAATCTCCTCTGGCCGTTGGCTCCTTCCTGGAGCAGCATGCACGGCAGCTGTTCAGACCGGCCAGTCACAGCCAGGAGGAGGATGAGCAACAGGAgggggaagaagaggagaaggaggaggaagaggaggatgaagaggcccagccagagAGCCCTCCTCTGGGTCAGGAGGCAGAGGAGGCCGCTGTCCTCGCAGGGAGACATCAGACAGAGCCCCCCCCGAGCAGGGCTTCAGCTCACAGCCTGCCTTCCCCTGGACCTCCAGCACCCCCTGCAGACCTGACGCCCGCTGTGCGACAGAGGATTCACGAACTGAGCATCATGGACTACGATGAGACACTGCCAGAGGACTGACTGAGGGCTGGAGAGATGGATGGAAGGAGGGAGGTTGAGTCAGATGGAGGTGGAGATTAGATCAGCTGCTCCAGGTGTTAGCAGTCCACAATCACTATCTGATCTTTCCCACATCAGGACCTTCAGTCACCCTTaatatgaaaaataataaactaCACTAATATACAGCAGCACTTATCTAAAAAACTGTGGACAGAATatgtttgaaaaaataaataaaaggcagaaaaagTTTAGCTCTATTATACTTCTAGAAGCttgagctaactgctaacatgCTAGGCTTGATGCTTTATTTGAGAGATCCAATAGCAGTTTGTACTCCAGCAGAGCAGGTTTGTATCAAATAATTCTACACAACTAAGAGTCCTTCCTCCATTTTGAACACAGCAAGCTTTCAAGAGTGATAATCAACAACTGTGGCAAGTTGTGCTCAAGGTAGCTTATAAGCTAGCTAAACGTTTCTTAAACTGTTTTAGTTCATTCCTATTGCTAGtgccaaaaaaagaaacaaagtggACTTGTTAATGATATGTTTGCTGTTTCAATGGTTAATAATGAACTTTATTTGCTAACATTTGATTTATGGATCTACAGAACGCATTAAATTCAACCGATAACATGAAGGTGAAAACTCttccttctaaaaaaaaaaaaaaaaaaaacaattgtgattTTCACACTGAATGTGTTGTTTGCAACATGATCTTTAACGACACAAGATATGAGCTACATTACAGCTTTAACATTAacaaagctaacattagcttgttaGCTAACAAACAAGAAGCATTAGGAATGAAAGGAATAATATTTTACCACCGAAAATACACTTcacatataaataaattatgaattaacattttctCATGATCTATTTGCTCTGCTTTGCTGCGACTGAAGGTCCTGAGTCTCCACAATGAGTTCGATAGTTGGGTTTATGTCTGGAGGGACTTGTAGTCGCCAATAGGAAACAAAAAATAAGGGAAGAAAAACAGAATTCTGTGTTTTAGTGTTGAATGAATTTACAAGGAAGCTAACAGCAGCTATGTTTATCATGCAATGTCAGCTGTGACATGAAACTGCCACactgtcgcccaaaaatgacgCATGCTACAGCAGCATCAAAACACTAAATTATAATCTGACTTTTGGTTTAATCGATTAATGAGTAACCCTACTGTTGTGATTATTCCCACTATTTTATTTGCCCACTAACTGCAGCCGAACGAGCTGTACATCAACACAATAGAGTTCTGCAGGTTGAGTCCTATAACCCTGAAATTAGTTAACTGCATGTTTGCACTCTGGTTCCCTCATCTCGAAGTCTATGGGtttttgtgaatgtttttttttgtttattttctccAATTAGCCAACAGCCAATGGAAAAATCGCATGGCTTTTTGTACAGGGAACCAGGGTGATGCTAACTTCATTGTTGGCCAAAACAAATACTGCAGCACTCTATATCTGACATATTAGCCTCTTCTAAAGTATTTGTGGCTGACATGTTAGCAAACCGCTGCCCACTTAAGACACAAATTAACATGATCAACCCACATTAACAATGGGGATGATTAGTTGTTGGGTTCCTCAGGGTTCAGTTTTTGGTCCTTAATATTTTCAATTTACATGCTGATATGCCAATTTATTTGTCTGTCAACCGTCAGCAATTTATGGATCTTAAATCTGAAATTCAACCATTCAGATCCCACAAATCTTTTTTATATACTTAGAATTCTTTTTCAAATGATTGGTAAAGACACAGAGTTTGGTGTGATCATAGAAAAGCCTTAATAATCCAGTAAAACATTTTTCTCCTGTCTCCAGTCTGGGGTGACACGTCAGGGCGACAGCTGCAGTAATCAGCCTTAATCTTGTTATGATTGAATAATTAGCGGGTAAACTGTCATAAATATTCCTTAATTTTGGGAAGAATATCTCCTCAGGTTAACAGCTCAGGATGCCAGCCTCAGATGTCTACTACAGAGACAGCTCCAGGACAGGTTTAGTCTAGCTTAGCAGaataacattttgggaaatactgtTAAActgctgcttccagtctttatgccaAGCTAGGCTAACTGTGTCCTGACTTCAGCTATTTTCTTACAGAGATatgatattgatatatatttaaacaCTTCACTctgataaagaaagaaagagaataaactattattatatattattattattattattattattattattataactatttaaaaaaatgctaaaCTGTACCTTTAAACCAAAAACTGAGGAGGATCAGTTTCAGTTCAGGATGTAAACTTCAGTTTACATACAGACCAAAGACTTCCTCTTGTCCTCTGTAGGACTCAATCCAGCTGATTAAACCTGAATTGATCAGAGTCTGTAATGATCTCATTTGGGtgatttcttctctttcttagCAACTCAACATGGCAATTGTCCCCAGCAGTGTTGCTCTCTTTACTTCAGAGATCTGCTGTCAGGAACCAGCTATGCTTATGTGTTTTGAGACAAATGTTAAACTGTGAACACTAGAAATAAAGACTTCTAAAATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639534.1 lncRNA downstream 40532 14559086 ~ 14559729 (-) True LOC120560921
XR_005639535.1 lncRNA downstream 43762 14554203 ~ 14556499 (-) True LOC120560922
TU82515 lncRNA downstream 114724 14485242 ~ 14485537 (-) True G61586
XR_005639560.1 lncRNA downstream 133907 14460926 ~ 14466354 (-) True LOC120561033
TU82547 lncRNA upstream 4414 14629611 ~ 14630973 (-) True G61601
TU82599 lncRNA upstream 173723 14798920 ~ 14799149 (-) True G61647
TU82581 lncRNA upstream 177367 14802564 ~ 14867657 (-) True G61631
TU82649 lncRNA upstream 340110 14965307 ~ 14965785 (-) True G61695
XR_005639490.1 lncRNA upstream 358270 14983467 ~ 14985185 (-) True LOC120560531
XM_039804331.1 mRNA downstream 1119 14582084 ~ 14599142 (-) False ak8
XM_039804333.1 mRNA downstream 1119 14582084 ~ 14599142 (-) False ak8
XM_039804330.1 mRNA downstream 1120 14582084 ~ 14599141 (-) False ak8
XM_039804332.1 mRNA downstream 1220 14582084 ~ 14599041 (-) True ak8
XM_039803814.1 mRNA downstream 20098 14566031 ~ 14580163 (-) False ddx31
XM_039803153.1 mRNA upstream 363950 14989147 ~ 14991145 (-) True LOC120560533
XM_039804652.1 mRNA upstream 404679 15029876 ~ 15041380 (-) True tti2
XM_039802121.1 mRNA upstream 420685 15045882 ~ 15061352 (-) True LOC120560022
XM_039802120.1 mRNA upstream 421556 15046753 ~ 15064841 (-) False LOC120560022
XM_039803861.1 mRNA upstream 445070 15070267 ~ 15076395 (-) True ppiaa
TU82089 other downstream 1010929 13589039 ~ 13589332 (-) True G61264
TU81433 other downstream 3410520 11189142 ~ 11189741 (-) True G60715
TU80745 other downstream 6197695 8401022 ~ 8402566 (-) True G60145
TU80531 other downstream 6712858 7879424 ~ 7887403 (-) False anapc7
TU80421 other downstream 7015742 7584086 ~ 7584519 (-) True G59881
unassigned_transcript_252 other upstream 313778 14938975 ~ 14939047 (-) True trnaa-agc_14
unassigned_transcript_253 other upstream 319299 14944496 ~ 14944568 (-) True trnaa-agc_15
unassigned_transcript_254 other upstream 323562 14948759 ~ 14948830 (-) True trnae-cuc_15
unassigned_transcript_255 other upstream 326305 14951502 ~ 14951583 (-) True trnas-gcu
unassigned_transcript_256 other upstream 342482 14967679 ~ 14967760 (-) True trnas-gcu_1

Expression Profile