RNA id: XM_039803273.1


Basic Information

Item Value
RNA id XM_039803273.1
length 2815
RNA type mRNA
GC content 0.51
exon number 6
gene id pptc7a
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 7914857 ~ 7924566 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCAGAGCAGTCACAAGACTTTGCTAGCAGAGCGCAGTGTGTGAGGCCACGGGGCAACCGGTTCACACTTTGTGTTATATATCGCTAGTAGTCTCAAAGACAGGACTGACACCATGGCCGCGGAGAACCAGCACTTACGGGTCTTTTGGAGTAGAAGAGGCGACTTTTTTcggtgattttttttctttcttttcttcccagATATCACGGCGCAAGAACAAAGCTCCTCGAGTCTGTACTTACATCATTGCGTATGCGTGCGTGGCGGCTGTTGTCGGCGGCGGCGGCAGTGTCTGGCTAGCTCAGCCTCACATTCACATTAGCAAGTCAACATTGGACATCGCCGCTAAGCTAGCAGGGTTGCTAGCTTGGCCGGTTTGTTTTGGTAGGAGCTGGTGTGTAGGTGATGTTGTCCGTCCTGTCGTACGGTAGACTTGTGGCCAGAGCTGTCATCGGCGGACTTTCTCAGACAGACGGCCGCGACTACAGCCTGGTGACGGCGAGCTGTGGCTTCGGCAAGGACTTTCGCAAAGGCATACTGAAGAAAGGGATGTGCTATGGGGACGACGCGTGCTTCATCGCCCGACACAGATCCGCTGATGTTTTGGGTGTAGCAGATGGAGTAGGTGGCTGGCGAGACTATGGCGTAGACCCATCGCAGTTTTCAGGCACACTGATGAAGACGTGCGAGAGGCTGGTGAAGGAAGGACGCTTCGTCCCCAGCAACCCAGTGGGAGTCCTCACCAGCAGCTACTACGAGCTGCTGCAGAACAAAGTGCCCCTGCTGGGCAGCAGCACGGCCTGCATTGTGATTTTGGACCGGCAGAGTCACCGGCTGCACACAGCCAACCTGGGAGACTCGGGCTTCCTGTTGGTCCGGGGAGGGGAGGTGGTCCACCGCTCGGACGAGCAGCAGCACTACTTCAACACGCCCTTCCAGCTGTCCATCGCCCCCCCGGGGGCCGAAGGAGCCGTCCTCAGTGACAGCCCCGACGCAGCAGACAGCTCTTCGTTCGACGTCCAGCTGGGGGACATCATCCTCACCGCCACCGACGGGCTCTTCGACAACATGCCTGACTACATGATCCTGCAAGAGCTGAAGAAACTCAAGAACACAAACTATGAGAGCATCCAGCAGACCGCCCGCAGCATCGCAGAGCAGGCCCACGTACTGGCGTATGACCCCAACTACATGTCGCCTTTTGCACAGTTTGCTTGTGACAACGGACTGAATGTAAGAGGAGGAAAGCCAGATGACATCACAGTGCTGCTGTCTATAGTTGCCGAATACACCGACTAGAGTCTGTGTGGACGGGGGCATCTGCCTCCTCAGGTGATGGACTGCTTTGATTCCTGCTGGTCAGGATGAAGGACTGATGTCAGATGCTTTACCCGCACGTGTCGACTCTATTCTGCCTCATCCCCCAGCTGACCATCAATCccttctgccccccccccccaaaaaaaaacaactcctaCATGCCCAATTCTCTGTGATTGCTTACAACAGAGAGTGGTAGAATAAAGGGGACTAGAGGCCTGATGAATCCTCTTGGCCGGGCTGCATTGTTGGCATCTCTGCAGCGTTCCAGTGCTCTCTCTGGATAATCCCATTGCCAGGGATAAGCAGTCATCGTGTACGTCGGAGCTGAGGATCGTGGCTGGCGAGGATCAGTCGTCTTTCTCTGTCGGGTGGTTTGGGCAGGGAGGAAGTTGAGATTCAAAAGACCGAGGCAGACGTAGCCAGACGGTACGGGTTGTAGGCTTTTTCAAGCGGCCCCATGCTGGGCAGCTGGAAGGGAAAGATGCAGTCCATCAGTAGTGCTAAGAAGGGAACTGCACAGGAGATGGCGGCACGAGGGCTCAATAAATGGGCTGCTTTGTGCGAGCAAATGATACAGTGGTAGTTAGAAAACCTCAGTCAAAGGGCCCGGAACCTCGTATGTGGGTGCAGGGAGCATATGTTTGAGGACCGGTGTGCTGTTCTGGGATGTTAGGGTTATGTtcaatatttgcaaaaaaaaattagcGTATGTGACATTTATACATCTGTGGTTAGTGTCTTGGCAGGGTGATCCAATAAGATTTGATGAAGAGCAGCAGCTGCCTTTTCCATGCCAGTGTATTTCAAGTCTCGCACACATTTTTGTTGCCTAATGGCGGTTACGATGAGGATTTTATAGTTCAAAAGCCTCGCCAGATATAGGTTGTGTCAAACTCCCTTTAatctcacagctgctgctgcagaagtCTCGATTGTGATTTACATGCGATGTGTCTATggatatgtgtatgtgtgattaaTGCACTTGTGTGCTTGTCAGTGAGACTATTGATAGGTGTAATTTAGTTTGTATGAAATGGACGTGAAGGCTACAAACTTCTCCATTTCCACGGGGCTGCATCGGCGTCGCAGCCTCAAAACGCACAAAGCTTAAGAAGCATATCTGAAAAAGCTCAACACAGAGGAAGTTGGTCAGGTGaccaaatgtatttttgtaactttgttcAGTGGTATTGTTGAATTCTTTAGACTGATCACCACATCAGAGTAGCTTTAGAAACTTAATCAGCATTTccatatctttctctctctctctctctctccctccctctctccccctcctgcTTCAGACCTCCAAGGGCACATTTTTAAGTCGGGTCACTGCTGATTTCATGTGAAAAATTGTCATGTTTCCATTACATCATTACAGATTTGCACTCTGCATCTACCACCTCTTTCACCCACAGTTGAAAATATttcttagtaaaaaaaaaaaatatccatatTTTGTGTAATGTTCTAATGATGTGC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K17508 PTC7, PPTC7; protein phosphatase PTC7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80536 lncRNA downstream 10945 7903693 ~ 7903912 (-) True G59972
TU80534 lncRNA downstream 12318 7902231 ~ 7902539 (-) True G59970
TU80515 lncRNA downstream 37652 7827141 ~ 7877205 (-) True G59951
TU80467 lncRNA downstream 175281 7727777 ~ 7739576 (-) False specc1la
TU80413 lncRNA downstream 297722 7610429 ~ 7617135 (-) False G59875
TU80643 lncRNA upstream 245819 8170385 ~ 8170606 (-) True G60064
TU80651 lncRNA upstream 276470 8201036 ~ 8201375 (-) True G60072
TU80652 lncRNA upstream 276927 8201493 ~ 8201743 (-) True G60073
TU80730 lncRNA upstream 374611 8299177 ~ 8301619 (-) True G60133
XR_005639527.1 lncRNA upstream 438194 8362760 ~ 8369854 (-) True LOC120560869
XM_039803054.1 mRNA downstream 27432 7877399 ~ 7887425 (-) True anapc7
XM_039803849.1 mRNA downstream 94385 7766806 ~ 7820472 (-) True si:dkey-91m11.5
XM_039803851.1 mRNA downstream 138031 7766806 ~ 7776826 (-) False si:dkey-91m11.5
XM_039803848.1 mRNA downstream 148845 7727560 ~ 7766012 (-) False specc1la
XM_039803272.1 mRNA upstream 367 7924933 ~ 7930884 (-) True ppp1cc
XM_039802093.1 mRNA upstream 8405 7932971 ~ 7939104 (-) False myl2b
XM_039802092.1 mRNA upstream 8405 7932971 ~ 7939069 (-) True myl2b
XM_039803960.1 mRNA upstream 164470 8089036 ~ 8161257 (-) False LOC120561008
XM_039803959.1 mRNA upstream 164470 8089036 ~ 8161257 (-) False LOC120561008
TU80531 other downstream 27454 7879424 ~ 7887403 (-) False anapc7
TU80421 other downstream 330338 7584086 ~ 7584519 (-) True G59881
unassigned_transcript_243 other downstream 403566 7511221 ~ 7511291 (-) True trnag-ccc
TU80230 other downstream 918001 6991203 ~ 6996856 (-) True G59739
TU80011 other downstream 1391183 6522759 ~ 6523674 (-) True G59563
TU80745 other upstream 476456 8401022 ~ 8402566 (-) True G60145
TU81433 other upstream 3264576 11189142 ~ 11189741 (-) True G60715
TU82089 other upstream 5664473 13589039 ~ 13589332 (-) True G61264
unassigned_transcript_252 other upstream 7014409 14938975 ~ 14939047 (-) True trnaa-agc_14
unassigned_transcript_253 other upstream 7019930 14944496 ~ 14944568 (-) True trnaa-agc_15

Expression Profile