RNA id: XR_005639495.1


Basic Information

Item Value
RNA id XR_005639495.1
length 2316
RNA type transcript
GC content 0.44
exon number 9
gene id LOC120560614
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 17534483 ~ 17568014 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTGGCTAAGAACCTACAGCCTATGCTGAGAACACAGGAGTTGAAGGTTGAAATTTCTTTCAAAAACTGTCAACAGAGAGAGCAGCATGAGTTCAGTTCCATACAAAAATGCCTTCGTTTGGACAACGCTGTAGTTAGCCCATACAATACAgttaTGAGTGGTACAGTGCGACAGATCACTGTAGCTACTGATCCAAGCACCCCCTACATCCTGCGAGTGGACTGGGCTGTAGACCTGGGTGCTGGGTTCACATTAGCACTCACTGATGGCAACTCGGCATGGATCGGAGAAGTTTCAGAGGATGAGGTGACAAGGGAAGTCAACGATATGGGAGCCACAAGGGAAAGATATGTTGAGGATCTTTTTCAAGCGCTAATAGGAGgcgaaggaggaaggagaggaggtgaCAAGGAGGCGTATTCTTTTCACATCACTCCAGATCACTGTCACCTCTCGTATCAGAAGATCTGCAATGAAATCTCGGTGCACTTGGGTTCCGTGGAGCTCCAGCCAGCTCCAGACCCTCTAGAGCTGAACCGGGAGATGATTTGCCTGTCCCTAAAGCGCAGTACAGGTCTGAAGTCAAAAAACTGCCAGCTGTTGGAGGAGAACCGTAGATTGAAACAGGAGCACCAGAGAATACTCAGAGAGCTGGAGCAGCAAGTTGAGGATAAGGAGATGTTGGAGGGGGCGCTGTACTCACGTTTTGTCATGGTGCTGAATGAGAAGAAGGCCAAGATCAGATGCCTGCAGGATGCTCTCCGCCAGCTCCAACAGACTGACGACCAGCAGAGAGATGAGGACGGGAGACAAAGTGACAATAACACAATTCACTGTGAAGACGACAGTCAGGACACAAGACATGAGGCAGTTGAGAGCATCCATTCATCTCAGGAGCCAACTATTCTcatcacagGTCGTAATCTGGTGTGCCATGGCATCTCTGTGGACCGGACCTTTTCTGATGAGGAAGATGAACAACCGAGCCAGAAGCGTAGGTTGTGTCACACCCCGAGCCCGGAACCTTCCGAGCAGGAATAAAACCACAGACCTAAGTCTGAGGCTTTCCTTAATAACAGGTTTCCGTGATCCCTCTCCAGACTTCGTGCTCCATTCGGAGCTGCTGTCAAGACTCTACCCAGATGCGTTAGTGACCATGTGATAACAGGCGCTCAACGCCACCCAGTGCTTCCTCAGGAACTACTGGTGCTGGTAATGAGAACATGGCAGAAAATCTGGACCAGGAGTATGGAAGCAATTTTTTAAGAGTTTGACTTTGGCTGCCAAGACCCTCAGCCTTGAGACCAGACAAAGAGTAACAGCTATTGAGGGACAACAGGCTACACCCAGAAAACAGGGTGTCACCAACAACGAACCAAAGCTGCTGTGTTGCTGCTTATTCATCATGTCTTGCTGATGTTTTCCTCCTTCTTTTCATTATGAAAATAAACTGTACACCATGTCTTTCATTTCCACTTTCTAAGCTAGCATTTTGCGAACAATAATTTGACCTTCCCCTTGTTTCTCGTTTTCATCTGGCCTTTTATTCCTTAAATGTTCTGTGGCCCAGACTAGATGAGGGGTGTTATGCAGAGGGTTAATAGGGTTatgttgtctctctgtcttcacCTCCTTACCTCTTCCATTACCTCTGCTACCAGCTTCAGGTCCTGAGGTCATCACAGTGTGTCTTCACACTGACCGTAATGAACTTATGGAGACCAATTCAGAGTCTTCATCTGACCATTCTACCTTTTGACTTCGGGGTCTTCCTGCTGTCTTTTATGATTTTGATGATACTTAAATGTCTGCTGAAGACCACAGGTGGCCGTCTGGATAATCCCACAACACGCGCTTGCTGGTTTAGTAATCCCCACAGGAATGTCACACTCTTCTCCTCTTTACATCCCATAATAAGGAATTTTATAAAGGGAAGCCCTGATCAGTTTCTAAGGATCATTTACAGATGCGTGATGACAAAGTGCCAATGGAGGATGAGACCAAGTGTGAAAGATTAGGAAACTATAAtgaattgaaaatgaatgaatattgtATTTGAATAGAACATgatgatatatttttttctaatttaaaagacattttaaattctGTCTTCAATCAGTTGATTCAAGAATACATATTTGTATTTGATTTTCCCtggaaatgtattaaatatgcATGAAGGAGAATAGTATTTTATTATGTGAaatattgtaaatgtttttatatgttgTCTGGGTTAATACCTATTTTGAAATGTCTCACAAGACAAGTTGTGTTAATTTCAACCTGacttaaataaacatttaactTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83289 lncRNA downstream 126050 17414652 ~ 17415346 (-) True G62205
TU83269 lncRNA downstream 455575 17083479 ~ 17085821 (-) True LOC120560425
TU83264 lncRNA downstream 474940 17065836 ~ 17066456 (-) True G62183
TU83206 lncRNA downstream 655447 16882821 ~ 16885949 (-) True G62131
XR_005639473.1 lncRNA downstream 706109 16821805 ~ 16835287 (-) True LOC120560320
TU83321 lncRNA upstream 7627 17575641 ~ 17575949 (-) True G62230
TU83322 lncRNA upstream 8205 17576219 ~ 17576552 (-) True G62231
TU83447 lncRNA upstream 273705 17841719 ~ 17842452 (-) True G62318
XR_005639419.1 lncRNA upstream 328777 17896791 ~ 17899827 (-) True LOC120560086
XR_005639420.1 lncRNA upstream 328777 17896791 ~ 17899826 (-) False LOC120560086
XM_039803149.1 mRNA downstream 6228 17482640 ~ 17535168 (-) True LOC120560528
XM_039802923.1 mRNA downstream 455584 17083567 ~ 17085812 (-) False LOC120560425
XM_039802920.1 mRNA downstream 485714 17022538 ~ 17055682 (-) True LOC120560423
XM_039802921.1 mRNA downstream 491751 17022538 ~ 17049645 (-) False LOC120560423
XM_039804382.1 mRNA downstream 992829 16547281 ~ 16548567 (-) True LOC120561320
XM_039804265.1 mRNA upstream 30074 17598088 ~ 17601914 (-) False LOC120561236
XM_039804263.1 mRNA upstream 31608 17599622 ~ 17605120 (-) False LOC120561236
XM_039804267.1 mRNA upstream 47127 17615141 ~ 17618859 (-) False LOC120561237
XM_039804266.1 mRNA upstream 47131 17615145 ~ 17618859 (-) True LOC120561237
XM_039803295.1 mRNA upstream 146522 17714536 ~ 17718413 (-) False f2r
TU83293 other downstream 60582 17478306 ~ 17480814 (-) True G62209
TU83278 other downstream 416919 17123996 ~ 17124477 (-) True G62194
TU83120 other downstream 990221 16548622 ~ 16551175 (-) False LOC120561322
TU83119 other downstream 991140 16548622 ~ 16550256 (-) False LOC120561322
TU83121 other downstream 991140 16548622 ~ 16550256 (-) False LOC120561322
XR_005639575.1 other upstream 30074 17598088 ~ 17605120 (-) False LOC120561236
XR_005639576.1 other upstream 30074 17598088 ~ 17605120 (-) False LOC120561236
XR_005639574.1 other upstream 30074 17598088 ~ 17605120 (-) True LOC120561236
XR_005639516.1 other upstream 291341 17859355 ~ 17895897 (-) False pip5k1bb
unassigned_transcript_262 other upstream 391799 17959813 ~ 17959884 (-) True trnaq-cug_5

Expression Profile