RNA id: XM_039803293.1


Basic Information

Item Value
RNA id XM_039803293.1
length 5737
RNA type mRNA
GC content 0.48
exon number 38
gene id iqgap2
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 17718628 ~ 17755600 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTAGCGGGGGCAAGATAACGCCAACACTTTGTACAGGAGTCAAGCCAAAGAAGTGCACACCATGGGGATTGTCTGCCGCAAGTGACAGTTGGCGTATTAATGAAACTTTTGAAGACTGTTGTTCCCCATTTTTGtcatttagctaacgttacaccggttattttattaatatcaatATATCCCGAGAGGCGCGGCTGGTTGCTGTAACATTAGCTTGTAGGTTGAAGTTATTTCCAGTTCAGACGAGTTCACAAGTGGAGGAAACGACGCAAGATGTACCATGAAGAAACCGCAACTCTACACAAGCCACGCTATGGAACGATTCAGGATGATGAGAGGCTGTCAGCAGAGGAGATGGATGAGAGGAGACGACAGAACATTGCCTACGAGTACCTGTGTCATCTGGAGGAGGCCAAACGATGGATGGAGGCCTGCCTAGAGGAGGACTTGCCTCCTACCACAGAACTggaggagggactgaggaaTGGTGTCTACCTTGGCAAACTTGCCAACTTTTTTGCCCCCAAAATGGTGTCTGAGAAAAGGATCTACGACAGAGATCAGGCCCGCTTTAAGAGCAAAGGGCTGCACTTCAGACACACCGACAACACAGTGCAGTGGCTCAGAGCCATGGAGTCAGTAGGTCTACCCAAGATATTCTATCCCGAAACGACAGATGTGTACGATCGCAAAAACATGCCTAAGGTGGTATACTGCATACACGCACTGAGTTTGTACCTGTACAAACTGGGCATTGCACCGCAGATCCAGGACCTGCTGGGGAAAGTAGCCTTCACAGAGGAAGAGATCAGTAACATGAGGAGTGAGCTGGAAAAGTATGGCATTCAAATGCCAGCTTTCAGTAAGATTGGAGGAATCCTGGCCAATGAGCTTTCAGTGGATGAAGCTGCCTTGCATGCTGCTGTGATTGCCATAAATGAGGCGATTGACAGAGGTCAGACGTCTGTGACAATGGGAGCCCTGAATAATCCTAATGCAATGCTGCGGAATACCCAGGAAGCTCTAGCCCAAGACTACCAGGACACACTGAGCCAGGCCAAGGCTCGTAAGCAAGATCAATCCTCAGGGAGGCGTGCCTCGATTGCTACCGAAGAAAGAGATGTGTATGAGGAGCTGCTGACTCACCAGGAGATCCAGGGCTGCATTGACTTTGTCAACATCcaggcagcagaaaggcaggTGAATCAAGCGGTGTCGACCCAGGATGAGGCTGCTCTGTTGGCTGCACTAAGGCTTGAAGCTCTGGCCCTGCTGGGTGTTCAGGAGTCAAACTGTCGCTGGTACCTGGAACATTTTACCACCTACTGCCAACATAAATCCAAGGATGGAGGCAGGGCCGTGATGATGGACAAAGAGGAGATTCAGAGAGTTGTCAGCTCTTGTAATGACTTTGCTGAGGCAGAGAAACGAAAACTCAAGGCAGTTGCAGGGATCAATACAGCCATTCGTCTTGGCAATGCAGTGGAGACGGCGGAGGAGCTCATGAACCCTGAGGCACAACTGCCAATTGTCTACCAAACTGCTGCCAACCTCTATCAGACTGAGCTTTTCAGTTTGCAGCTACAAGGGGGGCGGTCTGGCTTGAGCCACGAGGAGCTGAGTGTAGCTGTTGAGATGCTGTCAGCTGTAGCAGTGCTGAATGAGGTGCTGGACACCAAAGATCCCCAGGCTGTGATTGAGCAACTAACCGACTCTCCTCTGGGCTTCACCAACATGGACCAAGACAACCTAAACAGGTATGCTGACACTCTTATCAAACTACGAGGCGAGGCTCTTGCCAAGGGCCAAGAGTTCCTCACCTGGAATGACGTTCAGAAATGCATTGATACAGTCAACGTTCAGGTCCACGAGGAGCATGAACGCGTCATAGCTATAGCTGAAATCAATGAGGCGCTCAACTCCGGTGATCATCAGCAGACACTTGCAGCCTTGCTACTCCCTACGGCCAAGTTGGCAGGGGTGAACCCAGCCACTGCCAAACACTACCATGATGTCCTACAATATACCAAGCAACTCATCTGCCAGAGCTCTGGAGACGAGTCTGCAGTACTGTGGCTGGACCAAATCCAAGAGGCCATACACACAGCCAAtcaggatgaagaggaggctctCAAATTGGCAGGAGCACTTGCTGATCTTAACGTGATAGTGGCCGAGGGGGACTCTCAGAATACACTACAGGCTTTGCAAGTTCCCAGAGCAGGACTGAGAGCGGTGCTCCCTGAATGTGCTGACGCATACCAGGCTGAACTGGCGCAGAGACAAACAAACAGTGCTTCTAAAGGCGCCACTGATAGTGTGTGGGTAAAACATTACATCAAGGACAGATATGACTACTACTATAACCTGGAGACTGGACAGGGCACCTGGGAGGAGCCAGAAGGATTTGAACACAAGAGTGGCCAGCTCAGTAAAGATGAAATCCAGGGTGTTGTCAGCTATTTGACTGCAGAATATAACCGGGAACAACTATGGATGGCCAATGAATCCCTGGTGACCCAGCTGCAGGCGAGGATCAGAGGTTACCTGGTCAGGAAAAAGCACGCCCAGAGAATGGAGTATCTACGCCAGCAAGAACCGCATGTCGTCAAATTGCAGGCCTCCTGGAGAGGTTACAAACAGaagaaaatgtacaaaaacaggATGAATTTGCTTCAGAAAAATGTTGCTTCTGTTGTCAAGATCCAGGCTCTGGTGAAAATGTGGAAAGCCAAACGTAAATACAATCAGAGATTGCGGTTCTTCAAAGATCATGAAAAAGAAATTGTGAAAATCCAGGCTTTTCTAAAGGCCAACAAAGCCAGAGATGATTACAGAACCCTAACTGGGGCCAAGGATCCTCCTCTGTCAGTGGTGCGTAAGTTTGTTCACTTGTTGGAGCAGAGCGCCCTGGACCTTCAGGAAGAGCAGGAAGTGACACGCCTTAGGGAAGAAGTGGTCACAAATATTCGCTCCAATCAGCAGATGGAGAAAGACTTGAACCTGATGGACATAAAGATTGGACTGCTGGTGAAAAACAGAATCACTCTGCAGGATGTTGTGTCCCATAATAAGAAAATGAACAAGAAAAATAAAGCGAGTAAAGAGGACTTGACCACAGGAGACAGACTGGGTATCAAGGGTCTAAGTAAAGGCAAAAGAAGGAAGCTGGAGGCCTACCAACATCTCTTTTACTTGCTGCAgACCAATCCACCTTACCTGGCAAAGCTGATCTTCCAGATGCCTCAAAACAAGTCGACTAAGTTTATGGACACTGTGGTCTTCACCTTGTACAACTACGCTTCTAACCAGAGAGAGGAATACCTGCTGCTCAAACTCTTCAAGACTGCTCTAGAGGAAGAAATCAATTCGAAGGTGGACCAGATCCAGGACATAGTGACGGGGAACCCAACAGTCATTAAGATGGTGGTGAGCTTCAACAGAGGTGCACGTGGCCACAACACACTCCGGCAGCTGCTGGCTCCAGTGGTCAAAGACATCATTGAGGACAAGAGTTTGGGTATCAACACCAACCCAGTGGATGTGTATAAAGCCTGGGTCAACCAGCTAGAGACGGCTACTGGAGAGGCCAGCAAGCTGCCTTATGAAGTGACTCCCGAGCAGGCCATGTCACATGAGGAAGTACGCAACCGGCTGGAGGCATCCAGTCTGGCTCTGCGCTCTGCTACAGATAAGGTCTTGAACTCCATTGTGTCCTCACTGGATAATATCCCTTATGGCATGAGATACATAGCAAAAGTTCTGAAGAACAGCCTCCATGAAAAGTTTCCAGATGCCTCAGAGGATGAGCTGATGAAGATTGTAGGAAACCTGCTGTACTATCGCTACATGAACCCAGCCATCGTGGCCCCCGATGGCTTCGACATCATCGACATGTCAGCAGGAGGGCAGCTTCACGTAGACCAGCGTCGTAACCTGGGATCTGTTGCAAAGATGCTACAGCATGCTGCTGCCAATAAGCTGTTTGAGGGCGAGAATGCACATATGACGTCAATGAACAACTACATTTCTCAGACATATGAGAAGTTTAGGGAATTTTTCCAGTCAGCATGTGATGTCCCTGAACCTGAGGAGAAGTTTAATATCGATGAATACTCAGACATGGTGACTCTAAGCAAGCCTATCATCTACATCTCAATAGATGAGATCATCAATACCCACTCGCTGCTTTTGGAACATCTGGAGGCCATCTCTCCTGACCACAATGACTTGCTGCATGAGCTGCTGCAGGACCTGGGAGACGTCCCTGATGTAGAGACATTGCTCGGTGAAGGAGCAGTAGACCCACATGACCCAAACAGAGAGAGTGCTCTCAGCCAGCTGGCCAAGACCGAGATCTCCCTCACCCTAACCAGCAAGTTCGAGCTCCTGGAAGGAGATGACAAAGACTTGAAGACTCTAATGACAAAgaCAAAAAAGCTAATAGTGGACGTGGTTCGGATTCAACATGGAGACAATTTGCCTGAAATTCTTGAGACCCCGGCTACTGTCCCACAGGAGTCGGAGCATACTAAGGTTGTAGAGCGCCGGGCTGTCCAGGATGCTCAGACACCAGAAGGTCTGAAGAGCAGCCCGGCCGTACTGGAGGACAGCCAGCTGCCTCTAgagcagaagaagaggaagatccTGAGGAACCTCCGTAACCTGGAGCAGGCTGGCCTTGTCACTGCCAGTAACAAATACCAGGACCTCATCAATGACATATCAAAGGACATTCGCTACCAAAGACGCTACAGACAGAGGAGGAAGGCCGAGCTTGTGAAGCTCCAGCAGACACTGACAGCACTCAACTCAAAAACCGCCTTCTACCAGGACCAGATGAACTATTATGATACCTACATCAAGACCTGCCTGGATAACCTCAACCGGAAGAATGCACGCAAATCTATAAAACTGGACAGCAAAGGCGAAAGTAAGGGCAGTAAGAAGTGGAAGCCACAGTCTCTGAAGTACACTGCAGCGAGGCTGCATGAGAAAGGAGTCATCCTGGAGATTGAAGGACTTCAGACAAACCAGTTCAAAAATGTCATGTTTGACATTTCACCCTCTGAGGAAGTTGGGGATTTTGAGGTGAAGGCCAAGTTTATGGGAGTTGAGATGGAAAAAGTCCAGCTTCATTTCCAGGACCTCCTTCAGCTGCAGTACGAAGGCGTGGCCGTCATGAAGATGTTTGACAAAGCCAAAGTCAACGTCAATTTGCTCATCTTCCTCCTAAACAAAAAATTCTATGGAAAATGAGAAAGTAAAGAacaaggggggtgggggggggggaacaacAGGGAATGAAGGGAAACAGATTGTGCCTTCTGACAGTACTGAGTTTGTTGAACCAaattaatttagaaaaaaaccATCAGCAACAGTGTTTTGTGTCACCTTATTTATAATTTGATGGATCACACCAAAATGAAATGATCTTGTCCAACTTAATGTATCCGTTCTGTATTTTTCCACGTGGTGattgtaaatgtaatgtatttttaagaaTGAAATCGTAATGATAttcatgttttgtatgttaaaGCTCAGAAACACTGTTATTGTTACCTTGTATGTTGAAACAACTATTAGTATATTAGTATAGAAATGGAGCTGTGGAGCAACTTTCCACTGCCCTGCATAGCTATATGAAATACTGTATTTACTTGTGCCTTTTAATTAAAGCATTTAAAGAAAGatgttttaattaataaaacattgtaagaGCTACAactga

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83322 lncRNA downstream 142076 17576219 ~ 17576552 (-) True G62231
TU83321 lncRNA downstream 142679 17575641 ~ 17575949 (-) True G62230
TU83289 lncRNA downstream 303282 17414652 ~ 17415346 (-) True G62205
TU83269 lncRNA downstream 632807 17083479 ~ 17085821 (-) True LOC120560425
TU83264 lncRNA downstream 652172 17065836 ~ 17066456 (-) True G62183
TU83447 lncRNA upstream 86119 17841719 ~ 17842452 (-) True G62318
XR_005639419.1 lncRNA upstream 141191 17896791 ~ 17899827 (-) True LOC120560086
XR_005639420.1 lncRNA upstream 141191 17896791 ~ 17899826 (-) False LOC120560086
TU83469 lncRNA upstream 159326 17914926 ~ 17926955 (-) True G62333
TU83475 lncRNA upstream 176142 17931742 ~ 17933468 (-) True G62339
XM_039803295.1 mRNA downstream 215 17714536 ~ 17718413 (-) False f2r
XM_039803294.1 mRNA downstream 218 17714536 ~ 17718410 (-) True f2r
XM_039804267.1 mRNA downstream 99769 17615141 ~ 17618859 (-) False LOC120561237
XM_039804266.1 mRNA downstream 99769 17615145 ~ 17618859 (-) True LOC120561237
XM_039804263.1 mRNA downstream 113508 17599622 ~ 17605120 (-) False LOC120561236
XM_039803301.1 mRNA upstream 3641 17759241 ~ 17791827 (-) True sv2ca
XM_039803302.1 mRNA upstream 6835 17762435 ~ 17792494 (-) False sv2ca
XM_039804481.1 mRNA upstream 54449 17810049 ~ 17815272 (-) True ankdd1b
XM_039804298.1 mRNA upstream 60232 17815832 ~ 17824743 (-) True polk
XM_039803673.1 mRNA upstream 97806 17853406 ~ 17895895 (-) True pip5k1bb
XR_005639575.1 other downstream 113508 17598088 ~ 17605120 (-) False LOC120561236
XR_005639576.1 other downstream 113508 17598088 ~ 17605120 (-) False LOC120561236
XR_005639574.1 other downstream 113508 17598088 ~ 17605120 (-) True LOC120561236
XR_005639495.1 other downstream 150614 17541396 ~ 17568014 (-) False LOC120560614
TU83293 other downstream 237814 17478306 ~ 17480814 (-) True G62209
XR_005639516.1 other upstream 103755 17859355 ~ 17895897 (-) False pip5k1bb
unassigned_transcript_262 other upstream 204213 17959813 ~ 17959884 (-) True trnaq-cug_5
TU83669 other upstream 537656 18293256 ~ 18296678 (-) False LOC120560503
XR_005639489.1 other upstream 543301 18298901 ~ 18303862 (-) False fancg
TU83796 other upstream 622002 18377602 ~ 18380502 (-) True G62580

Expression Profile