RNA id: XM_039803298.1



Basic Information


Item Value
RNA id XM_039803298.1
length 1475
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC120560621
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 17712920 ~ 17715065 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TCACATGTACTACAGCTCTTCTCAAATGCACTGCTGTTCCCAGAAACTTCAACCAAGACTGTTGCTTTGTAACGCCTCTGTTAGTGGGGGGGAGAAAGAAGACGTCAAACTTTTATACTGTCACCACAAGGAGTCCACTCAGACCCGCAGGGAAACAACATTCATTCTATTGAAGAAAAGCCGCTTCAggtccttttttctttttttaaatgtctccaCAGTCAGAGACAAGTCTTGGCACTTTGCTTGAGTTCATTCAAGGGCAGCTCTAAGGGCAACTGAGTTGTCGGGCAGGCCATTCAATGCTAAACAAAAGAAATCTGCATGGTCATCAAAAGACCTTCACTGGTGCATCTGAGTTTGGAGAAACCCCCTCCTCCCCATTATTAGCACTTGCACAGcagatctttttatttttttttatgaaatccCAGAGGGCAAATAAATCAGCTTTAGAAGTTTTCTGTTGCAGCTTCAGCGACATGCTCTGCAGTGCTGCAGACTCTCCCTCATCCGTCTGTCTGACCATGGCTCtgcctgttgttgtatttctGTTGGCTCTCACTTCCCTCAGTGCTGCATCTGCACCCGACTGCAAGGACCTGGTCGAACCTTTTATACCGGAGGACCCCAAACTGGTTTTTGGAAAATGGGTGTATGTGATGGGAGCTGGTGACCCCAAGCCGTACCACAAGGCACTGGAGTCTCTGAAGAGCTCCTGGATTGACTTGTCTCCCACTTCTGACAGTCAAGTTGTGACATTACGTTGGGGAGATCACTGCTTTAACCGGTGTATCTTGGGGGAAGTAAACGCAACAGTCACAGGAATTGCCACTACATTCCGCAAAAATCTGTCAGACCACAAAGGACACATTCTAAAGACTTGCTCCGACTGCCTGCTGTGGACAGACACCTTTCGGAACGGGGACGTCACCGGTCGATACATCCTGCAGTTCACGAGGACTGGAAAAATGGATCCCAAAGATGTTGAAATTTTCAAGAAACAAGTTGGGTGTCTGAACTTCCCAGATAACTTCCACAGCTACGATGGCAAAACCGCAAACTTCAAGTACAATGCACATGGTCAGGAAATGGAAATGCTGCCAACAAGGGAATATTTGCTCTCTTCTCTTACAGTTTGTCTTTTGTTATGTTCTCCTGTGTTTCAGAGCTCTGCCCCGACGACAAAGAGagcacagagtgagcagcaataaaaaataaaaaaagagatacagcaacatttgtattaagCAATATGTGTAATGTAgtagttttgttttgattgaatTATTTACTGTACGCTATGAATGCCAGTGCATAAGTGATTCatgattttactttttttttttaaaacagatgGTGATATACTGAATTGCATTAAGAAAAAGATGTCAAAACCGAAGGTTTTTGTCTTACAATAATGCAGTTACTACATCACATGTAATATTTTTCAGATTAAAACTATATCATTGTTA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU83311 lncRNA upstream 140219 17568081 ~ 17572701 (+) False tmem167a
XR_005639496.1 lncRNA upstream 168012 17536842 ~ 17544908 (+) True LOC120560616
TU83301 lncRNA upstream 196823 17515654 ~ 17516097 (+) True G62217
TU83298 lncRNA upstream 219721 17492892 ~ 17493199 (+) True G62214
TU83297 lncRNA upstream 220191 17492390 ~ 17492729 (+) True G62213
TU83396 lncRNA downstream 42790 17757855 ~ 17758057 (+) True G62280
TU83414 lncRNA downstream 98524 17813589 ~ 17813813 (+) True G62294
TU83482 lncRNA downstream 223962 17939027 ~ 17940846 (+) True G62344
TU83519 lncRNA downstream 300340 18015405 ~ 18017448 (+) False thbs4a
TU83529 lncRNA downstream 339734 18054799 ~ 18056149 (+) True G62372
XM_039803300.1 mRNA upstream 139 17710190 ~ 17712781 (+) True LOC120560622
XM_039803297.1 mRNA upstream 8714 17641543 ~ 17704206 (+) True si:ch211-130m23.3
XM_039803150.1 mRNA upstream 118945 17591945 ~ 17593975 (+) True LOC120560529
XM_039803291.1 mRNA upstream 140215 17568013 ~ 17572705 (+) True tmem167a
XM_039804546.1 mRNA upstream 232363 17472263 ~ 17480557 (+) True LOC120561427
XM_039803296.1 mRNA downstream 18503 17733568 ~ 17735949 (+) True f2rl2
XM_039804477.1 mRNA downstream 86380 17801445 ~ 17810258 (+) True poc5
XM_039804479.1 mRNA downstream 86380 17801445 ~ 17810258 (+) False poc5
XM_039804478.1 mRNA downstream 86498 17801563 ~ 17810258 (+) False poc5
XM_039803576.1 mRNA downstream 109982 17825047 ~ 17850025 (+) False LOC120560752
TU83072 other upstream 1178771 16533329 ~ 16534149 (+) False LOC120560897
TU83070 other upstream 1237015 16468367 ~ 16475905 (+) False LOC120560890
XR_005639530.1 other upstream 1237023 16468323 ~ 16475897 (+) False LOC120560890
TU82943 other upstream 1935779 15763114 ~ 15777141 (+) True mctp1a
unassigned_transcript_261 other upstream 2093776 15619073 ~ 15619144 (+) True trnac-gca_21
XR_005639579.1 other downstream 283621 17998686 ~ 18009318 (+) False cmya5
TU83701 other downstream 615640 18330705 ~ 18331230 (+) True G62513
TU83742 other downstream 692322 18407387 ~ 18416006 (+) False tbx5b
TU83744 other downstream 701063 18416128 ~ 18419590 (+) False tbx5b
XR_005639481.1 other downstream 946092 18661157 ~ 18681161 (+) False acacb

Expression Profile


XM_039803298.1 Expression in all Baseline Samples

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XM_039803298.1 Expression in each Bioproject

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XM_039803298.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
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