RNA id: XM_039803302.1


Basic Information

Item Value
RNA id XM_039803302.1
length 2589
RNA type mRNA
GC content 0.51
exon number 13
gene id sv2ca
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 17759241 ~ 17792494 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGAATATGCAACTGGATATTTACAGAACTTGCGAATGTGCACGACAAGTGTGATGTCTTTAGCAGCACCCAAACCTGGAACGTTGAGACGCTGGAACGCTCAGGTGTCGATCAGCACCACGGACATAGACAGTCGTTGAAATGCATCGTGCGGACTCATAGTCGACTGCATAACAATAACaagCCTGGCCGATGATTGCCACAGCCATTGTGGGTTATCTCCTGTGGTGACTCAAGAGTTTTCCTCCCTGCTGCATCTCGAGACCCACTGATCTCACCATTCCTGCAATTCCCCTGCCAGCGTACACTCTTGCccctcttccctctttcttctaCTTCTAAGTATTCTCTGAACCCCTGTGAAGACCTACTGGTGGAGCCATAATGGAGGACACTTACAATAACAGGACTTCCCTGGCTAAGGGGGCCAAGGACATTGTCAAGGAGGCCAAGCGGCATGCAACAAAGAAAGTCAACAAGGTGGTGGATCGCGCCACAGATGAGTACTCATCCCACCACAACTACAGCCGATTCCAGGATGAGGAGGACGAAGATGAGGATTTCTACCGGAACCCTCCGAGGCAGGACGGAGAGAGCTACCCTGACAACGAGGAGGGCTCCAGTGATGCAACAGAGGGCCACGATGATGAGGATGAGATCTACGAGGGCGAGTACCAGGGTATCCCCTCCGCAGGAGATAGGAAGCAAAAGGAGGGCCAGGTGGCACTGGGGCAACCGGTGTCAGATGCCACAAGGGACCGTAAGGGGCTGGAGCAGGAGAGACAGGCGGACGAGGAGGAGCTGGCCCAACAATACGAGCTGATTATCCAGGAGTGTGGCCATGGGAGGTTCCAGTGGCAGCTGTTTCTGGTGCTCGGGCTGGCACTCATGTCAGATGGGGTGGAGGTGTTTGTGGTGGGCTTTGTGCTGCCCAGCGCAGAAACAGACATGTGTGTGCCCAACTCCAGCTCGGGATGGCTAGGCAGTGTTGTTTACTTAGGGATGATGGTTGGAGCGTTGTTCTGGGGAGGGATGTCTGACAAAGTGGGTCGCAGACAGTGCCTCCTCATTTGCATGTCCACGAACGGCTTCTTTGCCTTCCTGTCATCTTTTGTTCAGGGATACGGCCTCTTCCTCCTTTGCCGTCTCATCGCGGGCTTTGGGATAGGAGGTGCTGTGCCCATCGTTTTCTCCTTCTTTGCAGAGGTGTTGTCcagggagaaaagaggagaacACCTCAGCTGGCTGTGTATGTTCTGGATGATTGGAGAGATCTATGCATCTGCTATGGCCTGGGCCATCATACCACACTATGGTTGGAGTTTCAGTATGGGCTCAGCATACCAGTTTCACAGCTGGAGGGTATTTGTGGTCGTCTGTGccctgccctgtgtgtgtgctgtggtggCACTTACCTTCATGCCTGAAAGTCCCAGGTTCTACCTTGAGGTGGGGAAGCATGATGAAGCCTGGATGATCCTCAAACAGATCCACGACACCAACATGCGAGCGCGTGGGCAACCGGAGAAAGTCTTCACAGTAAACAGGATCAAAATCCCCAAACAGCTGGATGAACTGGTGGAAATGGAGTCAGAGTCTGCCAACCGAGTTTCCAAGTTTTTCTTCAGAATAAAGACTGAAATACATGGGATCTATCTGAATCTCATGAAGTGCTTCAACTACCCTATGCGAGAAAACATGATGAGACTAGCCATAGTGTGGTTCACGCTGTCATTCGGGTATTATGGCCTGTCAGTCTGGTTCCCTGATGTCATCAAACACCTTCAGGCAGATGATTATGCCTCCAAAGTGAAGCTGCACAATAATGAACACATTGAAGACTTCACTTTCAACTTCACTTTGGAGAACCAGATACACCAAAATGGCCTCTTCATCAATGACCGATTCATCAGTATGAAGCTGAGGTCCGTCACCTTCATTGACTCTACCTTTCGTAACTGCTACTTTGATGATGTGACATCGGTGGGCTCCTTCTTCCGTAACTGCACTTTCAGTGACGCTTTCTTCTTCAACACAGACATTGATGAATCCAAGTTAATAGATGGCACAGAGTTGATCAAcagcacattcacacacaacaaGAAAGGATGCCAGATGACGTTTGATGATGACTACAGTGCCTACTGGGTTTACTTCATCAACTTCCTGGGGACTCTGGCTGTTCTGCCCGGGAACATTGTGTCCGCCCTTCTCATGGACAAAATTGGGCGTCTGTCCATGTTAGGTGGCTCCATGGTCCTTTCAGGCATCAGCTGTTTCTTCTTGTGGTTCGGCACCAGTGAGTCCATGATGATTTTCATGTTGTGCCTTTACAACGGCCTGAGCATCTCTGCCTGGAACTCCTTGGATGTGGTAACGACTGAAtcattccctactgtcaggagAGGAACAGGCTTTGGATTCTGCAATGCTCTGTGTAAGCTGGCTGCAGTCTTGGGGAACCTGATTTTTGGTTCTCTTGTTGGCATCACAAAGGCCATCCCCATCCTCATGGCCTCGTCTGTGCTCGTCGGGGGAGGCCTGGTTGCACTCCGGTTGCCTGATACCAGGGAGAATGTCCTCATGTAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83322 lncRNA downstream 185883 17576219 ~ 17576552 (-) True G62231
TU83321 lncRNA downstream 186486 17575641 ~ 17575949 (-) True G62230
TU83289 lncRNA downstream 347089 17414652 ~ 17415346 (-) True G62205
TU83269 lncRNA downstream 676614 17083479 ~ 17085821 (-) True LOC120560425
TU83264 lncRNA downstream 695979 17065836 ~ 17066456 (-) True G62183
TU83447 lncRNA upstream 49225 17841719 ~ 17842452 (-) True G62318
XR_005639419.1 lncRNA upstream 104297 17896791 ~ 17899827 (-) True LOC120560086
XR_005639420.1 lncRNA upstream 104297 17896791 ~ 17899826 (-) False LOC120560086
TU83469 lncRNA upstream 122432 17914926 ~ 17926955 (-) True G62333
TU83475 lncRNA upstream 139248 17931742 ~ 17933468 (-) True G62339
XM_039803293.1 mRNA downstream 6835 17718628 ~ 17755600 (-) False iqgap2
XM_039803292.1 mRNA downstream 6835 17718628 ~ 17755600 (-) True iqgap2
XM_039803295.1 mRNA downstream 44022 17714536 ~ 17718413 (-) False f2r
XM_039803294.1 mRNA downstream 44025 17714536 ~ 17718410 (-) True f2r
XM_039804266.1 mRNA downstream 143576 17615145 ~ 17618859 (-) True LOC120561237
XM_039804481.1 mRNA upstream 17555 17810049 ~ 17815272 (-) True ankdd1b
XM_039804298.1 mRNA upstream 23338 17815832 ~ 17824743 (-) True polk
XM_039803673.1 mRNA upstream 60912 17853406 ~ 17895895 (-) True pip5k1bb
XM_039803674.1 mRNA upstream 60912 17853406 ~ 17883091 (-) False pip5k1bb
XM_039804605.1 mRNA upstream 107979 17900473 ~ 17909359 (-) True unc45b
XR_005639575.1 other downstream 157315 17598088 ~ 17605120 (-) False LOC120561236
XR_005639576.1 other downstream 157315 17598088 ~ 17605120 (-) False LOC120561236
XR_005639574.1 other downstream 157315 17598088 ~ 17605120 (-) True LOC120561236
XR_005639495.1 other downstream 194421 17541396 ~ 17568014 (-) False LOC120560614
TU83293 other downstream 281621 17478306 ~ 17480814 (-) True G62209
XR_005639516.1 other upstream 66861 17859355 ~ 17895897 (-) False pip5k1bb
unassigned_transcript_262 other upstream 167319 17959813 ~ 17959884 (-) True trnaq-cug_5
TU83669 other upstream 500762 18293256 ~ 18296678 (-) False LOC120560503
XR_005639489.1 other upstream 506407 18298901 ~ 18303862 (-) False fancg
TU83796 other upstream 585108 18377602 ~ 18380502 (-) True G62580

Expression Profile