RNA id: XM_039803306.1


Basic Information

Item Value
RNA id XM_039803306.1
length 4699
RNA type mRNA
GC content 0.37
exon number 2
gene id LOC120560626
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 35613850 ~ 35619866 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aataaatgcaaaaaaattaaGATAAAACATGTACAGGATGTATACATGTATTGCAGAAAATACTTAATCTTTCAATAGACTAATTAAAGCAGTTTATTAATAATTCTCAGGTGTCGACTATTCTGTTAAGAGATAGCCCAGTACTAAAGTTTGAGAGATTAGCAAAAACTACAATAATAGATAAACTACaataaaaaagcaacagaaaaaaacCTAAGGTAAGTGCAGAATGTTTAGTATGTGAAGAGGaaatagagaaaataaatgacacCTAACAGCCAGCAAGAAacctgattttattttttttaagtttgccTAAATGCTgtcaaattaaacaaatattagATCAGATCAGTTGCACTTGGGTTacactttaaaacattaaatgcattAACACTTTCAGTAAACTATGACTCAAATTAGATGATTAGATTAGAAGATGAAGTCTACGTTTTATACATTTACGCAGACTACACTTAGAACTGTTTTCTGGAAAGTACAATTATTGTGATTGTTTACTTTATCGCTGTATCTCATTattgtaattttgttttgtgtccTAAAACCTAAACGACACGTAAAGCTTCCCCATGTGAATTTCTCTCCCACAAGTTTGCAGCGAAGTGACAAAATGGCAGGATCAGCATTCGcatcTGAACTCAGGATTCTGGTGTTTGGAAAGCGACAAAACGAAAAGACAGTACTAAGTAACTTCATCACAAGGGAACAATAtgtttctgatataaaaatatCAAAGCAATGTAGGCCTACAGTCATCTATAAAGAATGGAGGGGGAAAACATTTACAGTAGTGAAAACCTCAGATGTCTTCAGTCTGCCTGAGGACAAAGTGAGACACGAGATGAAAATGTGCGTGGCTCTTTGCCCCCCTGGACCAAATGTAATCCTGCTATTAGTGAAGCCTACTGACTTCAATGAAGAGGACAGACAGAAATTCAAGTTCATCCTGAGTTTCTTTGGTCAAGATGCATTTAAATACTCAATGGTCATCAAAACGCAAAATGGGGAGGTCCAGAATGCTTCAGTAAACCAAGTCATCATAGACTGCAGACAAAGGCAGCACAGCATTAACTTTGATAAGAAAGATCTTTCCGAACATGATTATCAAGAACTGATTGATCAGATGGAGAACATAGTGACTGACAACAAAGGAGGACATCTAAACTGTACTGAAGAGACTGATTCAATGACTTCCAAACCTCCTCTGAACTTAGTGTTGTGTGGGAGATTGGAAACCTGGAAGATGTCAGCAGCCAATGCTATTCTGGGAGAAAGAAAGTTTGGTCCATTTGCAAAGTCATCAGAGTGTGTTAAACAGCAGGGAGAGGTGTGTGGACGTTGGGTTTCCCTGGTGGAGCTGCCTGCCTTGTATGGAAAACCTCAGAAGGCAGTAATGGAGGAATTATCAAGGTGTTTTACCCTCTTTGATCCTGAGTGCATCCATGCTTTTATCCTAGTCTTACCTGTGGGTCCCCTCACTGATGAAGACAAGAAAGAGTGGGAGACCATCCAGGACACATTCAGCTCTCGAGTCAATGACTTCACCATGATTCTCATCCCTGTGGAGTCAGATCCTAATTCTCCAGCTGTTGTAAAATTTCTTAAGGAGAATATGCACATACAGGAGCTCCTTCAGACCTGTGGAGAACGATATGTTGTCTTTGACCTTAGAGACAAGCAGCAGGTCTTTAATGTGTTGCACGCTGTGGAAAAGATGAGAGCGGGTGACTCCAGAGGTTTCACAAAGAAAATGCTGGTCAATCCACGGgtgaaaaacgttgaaaaacCAAAATCTGTACTCAAAATGGCTTATAAGCATCAGAGTAGAGAGTGTCTCAGGATGGTGCTGATTGGGAAGACTGGTTGTGGAAAGAGTGCAACAGCAAACACTATTTTGGGCAAACAATGCTTCAAATCTAAAGCCTGTCCAAAGTCAGTCACCGAGTTTTGCCGGAAAGAAACAGGAGAGATTGATGGACGGACTGCCATCATAGTCGACACCCCTGGCTTGTTTGACACGACTCTGACCAACGAAGAAATTAAACGGGAGCTTGTGAAATGCGTCAGCTTGTTGTCTCCAGGACCTCATGTGTTCTTATTAGTGCTAAAGATCGGCCGCTTTACCCAAGAGGAGAAAGATACTGTGGAACTGATCAAGGAGTTCTTTGGCAAGAATTCAGGAGACTACATCATTCTCATATTCACAAGAGGAGATGATCTGAGAAATCAAACATTTGAGAATTACATACGGGATGGCTTTGTTGAAAAACTGatagaggactgtggaggaagaTACCAGGTCTTCAATAACAGAAGTTCAGAAGATCAGAAACGTGCTCAAGCAAGAGAGCTACTGAGCAACGTTGAATCAATGGTGAACAGAAATGGTGGGGGCTGCTACACCTCCGAGATGTTTCAAGAAGCTGAGGCAGCCATACAAAAGGAAGTGAAGAGAATCCTGAAGGAAAAGGAAgaagacatacagagagagatgatggacgttgaaaataaacataaaaaagaaatccaggcaaagaaaaaagaattggCAGAACAAATAACCAAAACTGAACGAGAAAAAGAACTGAAAGCCAAACTAAttaagaaagaggaggaaatcAATAAGGAGCAGGAAAAGatgaagagagaagaagaaaagagagaagcaGAGGAAAGGAAGACAAAAATGCAAGATGAACTTGAACAAATGCAGTGGGAAAAAAGTCTTGAAgctgtgggggaaaaaataaaacatgaaactgaaaaaaaggaaactgcTGACAAAACATGGATAGAAAACAAAGAGGCATTGAGAAGAGGACAAGAGACTTGGAATAAGGAAAGAAGGGAAAAGTGGGAGAACCAATATCGAGAAGATCAACAGAGACGAGAGGAGGAGCAAAAACGACTTGAAAAACTCAGAGAAGAATatgaacaagaaaaaaaagaatatgaaaACCAAAGACAACAAGATGAAATCAGAAAACAACAAGAGGAGAAAGAATTAATGAAACTACAAGAAACCCTTTTGAAAAATCTGGCTGTAATCAAGAAAAAACATGACCAAGAGGCCAGAAAGCAAGCTGAAGAATTCAATGATTTCAGACAGAGATACACCGAGGACTTTGCAGCTGTGGCGGAAAAGCATGACAAGGAAATGGAGAATCTGAAGGAGAAGCAACAAATACACAATGATTTGATTGTACGCCAACTGACCAAACACAAAGCATATCAGAAAGACTTTGATAGATTGatgaaaaaacaagaacaagaaaTGAATGACCTGACAGGGACACTTAAATCGCCaaacaatgaaaatctgaacaaaaaaatcaatgaaCTAAAGACAAAACATGAGGACGAAAGAAATAACTGGATACAAGAACATGTAAAGAAAGCCAGAGAAAAGACCTGTTCCATTTTATGAGCTGTTGTGTTGCCTGTAAGGCCCTCAGTTGCAAAATGACAACATCACTTGTAGCCTAAAAGCATACaaagtgggggagggggggggtcctACTGTCGTTTTACTATGATAATTAGAGAGTATAACAGGCAGTATTGTGTGAATTTAGTGGAATCTGTAAATAGGATTAGGAAATAATTTGGGCTTTATAGGTTTACtgacagcagcagtttcaaactGTGAAACTAAGATATTAggatttcattttgtttgtttttccttacatacatacatcacaatttttacaaaagcaaatattgttttattttgtctagTCTGTTATCTTTGAAATTGAATGGCATGCATCATTAGTCCATGCTAACGTATCTCCACCTATATTTGTGAAATCCTATTGATTCACTACACAGTAAGGAGAAATGAGGAGAGGTAAAGGGAGAGTTGTACTTTGCAAACACTAAAATGACACAAACTGTGTTGAGTCACACTTTGCCCTCAGAATCATGAGGGAACTCTAGTTACTGTAGTTGGATGTGCATAATATGAAACGTGTTATTATGTCAGTCTACTGTTCCAGGCTTTTAGACAAATGTTTACAAGGATCAACTGCCTGAGCTGTTTACATGTTATACCATAAATCACTGAACATAATAACTGATGAAACTTTAACTGCGTCTATAATTTAGCCATAAAGTTCAGTACAGCCGGTTGCTTTTTGGAAGCTGTATGttgctgtccactgctcctaatgcttaggatgggttaaatgcagagatggaatttcactacattgtactgtataATTGTATGTGAcgattaataaaataataataaagtttcTTCATCTTATTGAAGGAAGGTTTCATTAGCTGCAAAGTCTGTTTGgtcatttgaaaaacaaaagttgTTTAACCTTCAAACTGACAACTACCTGCTTATATAGGAGGCAAGTATTAATcacattaattttattttaacatgaaATGTATATTTTCCTCATTTACATTAATAAAGTGCAGTAATACAATTCAATTGTACATCTAGTATCCAAaggtaaatgtgttttttttttgttcggTTGTGCTAATAATTACAGAAGTTAATTACTATATTTGTTATGTTTAAGATTTTGTAACATATTTTGACAGTAAGGTGGTATGCTTGTATTAGCGATTTAGAATTGTTCTCATTTGCACAATCTGAAACTGTATTCTCCTTTCCTGgtgataaaaataaattatacacCATTAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89604 lncRNA upstream 196112 35405895 ~ 35417807 (+) True G66997
TU89602 lncRNA upstream 207362 35388776 ~ 35406557 (+) False G66997
XR_005639572.1 lncRNA upstream 355847 35255661 ~ 35258072 (+) True LOC120561203
TU89494 lncRNA upstream 611723 35000278 ~ 35002196 (+) True G66907
TU89403 lncRNA upstream 749229 34861499 ~ 34864690 (+) True G66832
TU89791 lncRNA downstream 251557 35871423 ~ 35993376 (+) False G67152
TU89792 lncRNA downstream 251557 35871423 ~ 35877725 (+) False G67152
XR_005639503.1 lncRNA downstream 275285 35895151 ~ 35896357 (+) False LOC120560688
TU89802 lncRNA downstream 275313 35895179 ~ 35898183 (+) True LOC120560688
TU89804 lncRNA downstream 275313 35895179 ~ 35897011 (+) False LOC120560688
XM_039803308.1 mRNA upstream 1937 35607468 ~ 35611982 (+) True LOC120560627
XM_039803309.1 mRNA upstream 1937 35607517 ~ 35611982 (+) False LOC120560627
XM_039803310.1 mRNA upstream 10582 35596806 ~ 35603337 (+) True LOC120560628
XM_039803303.1 mRNA upstream 64688 35522669 ~ 35549231 (+) True LOC120560625
XM_039803886.1 mRNA upstream 91807 35463291 ~ 35522112 (+) True znf608
XM_039804555.1 mRNA downstream 55505 35675371 ~ 35683544 (+) True LOC120561433
XM_039803348.1 mRNA downstream 169225 35789091 ~ 35796234 (+) False rnf214
XM_039803347.1 mRNA downstream 169818 35789684 ~ 35796234 (+) True rnf214
XM_039804045.1 mRNA downstream 407444 36027310 ~ 36035340 (+) True LOC120561090
XM_039803579.1 mRNA downstream 558363 36178229 ~ 36217618 (+) True cemip2
XR_005639497.1 other upstream 66456 35522665 ~ 35547463 (+) False LOC120560625
TU89504 other upstream 554301 35046855 ~ 35059618 (+) False LOC120561428
TU89401 other upstream 749653 34861499 ~ 34864266 (+) False G66832
TU89783 other downstream 221008 35840874 ~ 35852056 (+) True G67146
TU89780 other downstream 221668 35841534 ~ 35854161 (+) False G67145
TU89779 other downstream 222212 35842078 ~ 35854161 (+) True G67145
TU89790 other downstream 251557 35871423 ~ 36023264 (+) False G67152
TU89793 other downstream 251557 35871423 ~ 36019253 (+) True G67152

Expression Profile