RNA id: XM_039803310.1


Basic Information

Item Value
RNA id XM_039803310.1
length 3398
RNA type mRNA
GC content 0.37
exon number 4
gene id LOC120560628
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 35596806 ~ 35603337 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ataataaatgtaattaataacCAAACAGATTCATTAATCAAAACAAGTTTATTGATCATTCTCTGGTGTTGACTGTCCTGAATGGTCTGGCCTGATCTGTCGGACCAAAAATATGATTCAACTGCAATAAAAGATACAACTTCAGGTACCAAGTTTAACTACTGAGGTGGAATTTACCTAACACAAAATGGCATCCGCATCTGAACTCAGGATTGTGATATTTGGAAAAAGCCAGAATGAAAAGACGACACTAACTAACTTACTGACTGGAAAACAAGATTGTTCTCATCCAAGAACGCGTGCACAATTTGcacatttgcacacaaaacCCTTCACAGTAGTGAAAACACCAGACGTCTTCAGTCTGCCTGTGCAAAGAGTGAAACACGAGATGAAGAAGTGTGTGGCTGAATGTCCTCCTGGACCAAATGTTCTGCTGCTGTTAGTGAAGCATTCTAATTTCAAtgaagaggacagaaaaaaaattaagtcaaTCATAAACTTCTTTGGACAAGATGCTTTTAAATCCTCAATGGTCATCATACCAAAAAATGATTGGGTTGGGAATTCCACAGTTTATCAACTCATCCAAGATTGCAGACAAAGACAGCATAGAATGAACTTTGATGAACACGATTTTCCAGACAATGATTTTCAAGAGTTGATTGAGAAAATGGAGAAGATAGTGGATGAAAACAGGGGACAATATTTGACCTTCACCGAAGAGACTGTTTGCCAGGGTAgacctgaatgtgcaaaacctACTCTTACAAGACGTGGATCAGAAGCTTATCAATATCAAGGAAAAGGATTTCACAGAATGGTGCCGGGTACAGCATCTCTCAGGATCCCTCCCAGGATAGTGCCAAGAAAAAAGTCTCCCAGGATAGTCCCGAAAAGAGAGTTTCCCAGTACGGTGACAAGTAGAGAGTGTCTCAGGATGGTGCTGATTGGAAAGACTGGTTGTGGAAAGAGTGCCACTGGAAACACCATTTTGGGCAAAGAATGCTTCAAATCGAAATCCAGCCCAAAGTCAGTGACCGAGTTTTGCGGGACAGAAACAGGGGAGATTGATGGGCGACGTGTCGTCATAATAGACACCCCTGGCTTGTTCGACACAACTCTGACCAATGATAAAGTTCAACAGGAGCTTGTGAAATGTGTCAGCTTGTTGGCTCCAGGACCTCATGTGTTCTTACTGGTGCTGCCGATCGGTCGCTTTAcaaaggaggaagaagaaactGTGGAGCTGATCAGGGACTTTTTTGGCAAGAAGTCAGAAGACTTCATCATTGTCGTATTCACCAGAGGAGATGATCTTGAAGACCAAACGATTGAGAGTTACATAGAAGAAGACACTGAGGGATCCTTAAAAAATCTGATAACTGAATGTGGAGGAAGATACCATGTCTTCAATAACAATGATCAGGAGAATCATTCTCAAGTTAGCCAGCTGCTGATCAAGGTTGAGACAATGGTGAAGAAAAACGGCGGTGGCTACTACACCTCAGATTGGTTTCAAGGAGCTGAGGCAGccatacaaaaagaaaaagagatcaTGATGTTGAAGGAACTAGAGATACAGAGGAAACAGAGGGACCTTGAAAGAAAACATCAAGAAGAAATGCGAGCGAAGGAAAGAGAATTGGCAGAGCTaagatcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaaaataaacttgatcaagaaaaaaaaaaaaaaaaccaaaaagaaaaaaaaaaaaaaaaaggaaaaaaagaaaaaaaaagagaaaagagggggAAAAGAAGAGAACAGAGATGAAAGAAACTAAGAAACGCAAGCTAGAGAAGACATAAAAAAAGAGGCTTGGGAGCAGGAAAGAAAGGAATGGTGGAACATACGATATCAAGAAGAGCAACAGGAACGAGAGGAGGAGCAAAGACGACTTGAAAAGCTCAGACAGGAGCAGGAATTTGAAAGatatgaaaacaaaagaaaagaaaaagaagagaggatCAAAAGAGAATATGAGGAAGAAGAACTCTATCAGGACATTGATGAAATAAGGAGGAAACACGAAGAGGAGGTCAGAAAGCAAGCTGAACAATGCCACGAATTCAGACACAAGTATACACAGGAAGTTTTAGCTGAGATGGAAAAGTGTGGAAAGGAGATGGAGGATCTGAAGCAGAGGCAACAAAACCAAAATGCCTCAATGATAAAACAGTTGTGCAGACACAAAGTATACCAGAAAGACTTTAAGAAATTGAAGAAAAACCAAGAACAAGAAATGAATGAGCTGAAATTGAAACTTTTAAACCTTGAGAAACAGAATCAGAGCAATGAAATCCATGAGCTAGAGAAAATACATGAGGAGGAAATACATAGGTGGATACAGGAACATGTGAAGAAAGCCAGCGAAAACAAGGCTTGTCACATTTTAtgagatgttttgtttttttctcacagCGGCACAGTTTCAGctgaaaaactgagcttttgtTTGAAGACTAAATATTTTGTGAGATTTTTGTCATGTTGACTGGTGTATATAGTTAGCGTATATAAAGTTGTTCAGGTACCATTAGTATTAGTACTTATTATAATACATGGACATCCCCTTTGTTTTGGAAGTGTGCTTCTTCTGGTCATGCACTTTGTAGCACAACTGCTCTCCATGTCACTTGACAATTTAGCATCAAAAACCTGATCCTGCTAAAACATTAGATGTTCAAAGGTTTTAGGCAGGATTGTTTTATTTCCACATTTAAGGCAAACCCCACCACAGTTGACACTAGATCTAATGATCTATTTACAACTAGCTTTAACAGAGACTAAAATGTTCAAGTCATGAGCATTTAAGCTTTTGTTTGAAGACTAAATATTTTGTGAGATTTTTGTCATGTTGACTGGTGTATATAGTTAGCGTATATAAAGTTGTTCAGGTACCATTAGTATATTTAATATTCAATGTCTGACATTAAAATAACAATATGATAAATTACGTTGTATAGTTGTAAGTGCAAATGTCTGTAAACAGATAACAATTATAGTAGCCAATGCACTGTAGCACATCATTTGTTTAACTTCTGTTAACTTTAAGAGCTGATTAAGTTTAAATGTATGCATGTTCAATAGCTGTAAAGTTCAGTGTATCTGTAGCCTGTACTGTCATTTAATATGACTTTGTCTTTTTGCACAAGTTAACAATTAACAATTAAACTATTTTGCATTAAGACAGGTAAGAGATATTACAGCAAATGTTAAGAGTAAACTAGTGAAACCTGACAAATAAATGGATGCGGAAAAAATAATTAcatatctgtttttgttttacaaggAATGTCTATTTCAAAAAGTGTTTATAAgagatgaatacatttttttatatggatgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89604 lncRNA upstream 178999 35405895 ~ 35417807 (+) True G66997
TU89602 lncRNA upstream 190249 35388776 ~ 35406557 (+) False G66997
XR_005639572.1 lncRNA upstream 338734 35255661 ~ 35258072 (+) True LOC120561203
TU89494 lncRNA upstream 594610 35000278 ~ 35002196 (+) True G66907
TU89403 lncRNA upstream 732116 34861499 ~ 34864690 (+) True G66832
TU89791 lncRNA downstream 268086 35871423 ~ 35993376 (+) False G67152
TU89792 lncRNA downstream 268086 35871423 ~ 35877725 (+) False G67152
XR_005639503.1 lncRNA downstream 291814 35895151 ~ 35896357 (+) False LOC120560688
TU89802 lncRNA downstream 291842 35895179 ~ 35898183 (+) True LOC120560688
TU89804 lncRNA downstream 291842 35895179 ~ 35897011 (+) False LOC120560688
XM_039803303.1 mRNA upstream 47575 35522669 ~ 35549231 (+) True LOC120560625
XM_039803886.1 mRNA upstream 74694 35463291 ~ 35522112 (+) True znf608
XM_039803804.1 mRNA upstream 202307 35380725 ~ 35394499 (+) True LOC120560914
XM_039804040.1 mRNA upstream 387091 35200417 ~ 35209715 (+) True LOC120561082
XM_039803781.1 mRNA upstream 414810 35161583 ~ 35181996 (+) True LOC120560891
XM_039803308.1 mRNA downstream 4131 35607468 ~ 35611982 (+) True LOC120560627
XM_039803309.1 mRNA downstream 4180 35607517 ~ 35611982 (+) False LOC120560627
XM_039803307.1 mRNA downstream 10513 35613850 ~ 35619866 (+) False LOC120560626
XM_039803305.1 mRNA downstream 10515 35613852 ~ 35619866 (+) False LOC120560626
XM_039803306.1 mRNA downstream 10582 35613919 ~ 35619866 (+) True LOC120560626
XR_005639497.1 other upstream 49343 35522665 ~ 35547463 (+) False LOC120560625
TU89504 other upstream 537188 35046855 ~ 35059618 (+) False LOC120561428
TU89401 other upstream 732540 34861499 ~ 34864266 (+) False G66832
TU89402 other upstream 732540 34861499 ~ 34864266 (+) False G66832
TU89404 other upstream 732540 34861499 ~ 34864266 (+) False G66832
TU89783 other downstream 237537 35840874 ~ 35852056 (+) True G67146
TU89780 other downstream 238197 35841534 ~ 35854161 (+) False G67145
TU89779 other downstream 238741 35842078 ~ 35854161 (+) True G67145
TU89790 other downstream 268086 35871423 ~ 36023264 (+) False G67152
TU89793 other downstream 268086 35871423 ~ 36019253 (+) True G67152

Expression Profile