RNA id: XM_039803312.1


Basic Information

Item Value
RNA id XM_039803312.1
length 1727
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC120560630
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 34310100 ~ 34314260 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAAAGGAGCGCGTGAGCGGCGGTTGCTGTGACTTCCTCGCTCATCGGCAGCTACATTGTGCGGACAGCAGCACGTTGTTGGCTTCTGCACGCTGAACTTTAATTCTCCTGTTCAAGGAGAAACCAGATTTCAAAGCTACCAGTTGTTTTCTCAGACGTGTGTAAGTTACCCCAGCTTGCGAAAACATGTCGGCCTCGGCGGCAAAAGTGAGTAAAAAGGAGCTGAACTCGAACCATGACGGAGCGGACGAAACCTCCGagaAAGAGCAGCAAGAAGCTATTGAACACATTGACGAAGTTCAAAACGAAATTGACAgGTTGAACGAGCAAGCCAGTGAGGAGATCCTCAAAGTAGAacagaaatacaacaaactCCGTCAGCCATTCTTTCAGAAGAGGTCAGAACTGATCGCCAAAATCCCCAACTTCTGGGTCACCACGTTTGTCAACCATCCACAAGTATCTGCCCTACTGGGAGAGGAAGATGAAGAAGCACTTCATTACCTGAGCCGAGTGGAGGTGACAGAGTTTGAAGACATCAAGTCAGGCTACAGAATAGATTTTTATTTCGATGAAAATCCGTACTTCGAAAACAAAGTACTTTCCAAAGAGTTCCATTTGAATGAGAGCGGAGACCCAtcttcaaagtcgacagaaattAAATGGAAATCAGGAAAGgACCTGACCAAGCGCTCCAGCCAGACACAGAACAAGGCCGGAAGGAAGAGGCAACATGAAGAGCCAGAGAGTTTCTTCACTTGGTTCACTGATCATGCTGACGCTGGCGCTGATGAGCTCGGGGAGGTCATCAAGGATGACATCTGGCCAAACCCCCTGCAGTACTACCTGGTTCCTGACATGGATGACGAAGAGGGTGAAGGtgaggatgatgaagaggaCGAGGAAGGTCTGGAGGACATAGACGAGGAGGGAGATGAAGATGGagaggatgatgaagaggaCGATGGAGAAGATGGAGAGGATGATGAGGGAGAAGACGACTAAGAAATAACATCTACCCAGACCCTCAACCTTCTATTCCCTGTTTGGTTTTTCCACTCACGTTCGGGAGCaaaggttttaatttgtttttgttttttttacttttttattttataaatctgTGTGCTTCATTTTCCATTCTGAAGCCTCTTCACCTTGTTGGTGCCATGTTATGTTCTCCTTTGACTCATCTAAGGCCAATGGCACTTTGCCCTGAATTGTGAGTAACATCCCCAAAGTCAtctcaaaaataataataaaagtataaaaaatagAATCAGCACGGCATCCTGAGTAGAAATTAAAGACAACACGCACAGAATTCCTCCTGTTAACGGTTGTGATAAATTGACTTAAAGCCATGGTGTAGTGACCCAGCGCTAGTTGACCTCAATTTTCcctccatttttattttatttttttcagttggGGTGTTGATCCcttgaaaaaaactgttattttCCCCCCTATGTGCTTAACGAGTACCAGCTCATTCCTTTGACTTGTAATGTTTAGGGGGAGGGCCGGGAGTATGTTGGTTATTGGGGAGAGTGGTTATTTTGACACCATTTctatgggacttttttttttttttattgtattgttttacagatatccATGAGATTTGAaatgacatttttaataaagaacaaaatggaaaaaaaaagcttgtaaatgTTGGCCCCCACTACTTCataggtaaaataaaaatacctgTTATCTCA

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K11290 SET, TAF1, I2PP2A; template-activating factor I

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89177 lncRNA upstream 28171 34187830 ~ 34281929 (+) True G66652
XR_005639406.1 lncRNA upstream 433093 33876175 ~ 33877007 (+) True LOC120560041
XR_005639570.1 lncRNA upstream 537566 33769844 ~ 33772534 (+) True LOC120561187
TU89072 lncRNA upstream 554145 33755569 ~ 33755955 (+) True G66571
TU89069 lncRNA upstream 584318 33725520 ~ 33725782 (+) True G66568
TU89217 lncRNA downstream 116682 34430942 ~ 34439928 (+) True G66689
TU89223 lncRNA downstream 142230 34456490 ~ 34456749 (+) True G66692
TU89226 lncRNA downstream 172278 34486538 ~ 34486751 (+) True G66695
TU89323 lncRNA downstream 193882 34508142 ~ 34509613 (+) True G66769
TU89399 lncRNA downstream 501329 34815589 ~ 34816327 (+) True G66830
XM_039803434.1 mRNA upstream 20447 34280979 ~ 34289653 (+) True zdhhc12a
XM_039803435.1 mRNA upstream 20447 34280979 ~ 34289653 (+) False zdhhc12a
XM_039803801.1 mRNA upstream 29845 34272947 ~ 34280255 (+) True slc25a25a
XM_039803019.1 mRNA upstream 122480 34170475 ~ 34187620 (+) True cnot6l
XM_039804184.1 mRNA upstream 519290 33779007 ~ 33790810 (+) False paqr3a
XM_039803311.1 mRNA downstream 2046 34316306 ~ 34330925 (+) True LOC120560629
XM_039803372.1 mRNA downstream 17582 34331842 ~ 34344199 (+) True gle1
XM_039802754.1 mRNA downstream 37451 34351711 ~ 34421494 (+) True si:ch211-251j10.3
XM_039802753.1 mRNA downstream 50222 34364482 ~ 34421494 (+) False si:ch211-251j10.3
XM_039802752.1 mRNA downstream 58694 34372954 ~ 34421494 (+) False si:ch211-251j10.3
TU89079 other upstream 533702 33775925 ~ 33776398 (+) True G66578
XR_005639474.1 other upstream 1197284 33077246 ~ 33112816 (+) False cds1
unassigned_transcript_266 other upstream 1738341 32571688 ~ 32571759 (+) True trnap-ugg
TU88651 other upstream 1940116 32364860 ~ 32369984 (+) True G66263
TU88642 other upstream 1980110 32322507 ~ 32329990 (+) True G66256
XR_005639528.1 other downstream 199750 34514010 ~ 34527405 (+) False cfap157
TU89395 other downstream 451686 34765946 ~ 34773700 (+) False LOC120561070
TU89401 other downstream 547239 34861499 ~ 34864266 (+) False G66832
TU89402 other downstream 547239 34861499 ~ 34864266 (+) False G66832
TU89404 other downstream 547239 34861499 ~ 34864266 (+) False G66832

Expression Profile