RNA id: XM_039803326.1


Basic Information

Item Value
RNA id XM_039803326.1
length 4035
RNA type mRNA
GC content 0.45
exon number 8
gene id homer1b
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 17967578 ~ 17988335 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATTTAGCCTTAAACCCTCTCCTTTCCCCTTCTGTACTCCCCTGTGTGACCCTCGCTCAGTGCTGCAGGCATTTCCatatcagagcagagagagagacagcgccGGCTTACACAGattgaaagacagaaagagttTCTGTTGAATAGCTGCATCCATTGAGTGTATTGGTTCACAAGTAGAGTGATAATGTATGAGAGGAAGTGTAGACTTTTGGTGTATGCGGGAACTCAGTTTTAGTTTGACAGCTCAGTTAGCTTGTTATCCATTTACACATGGCAATGAGTGTATGTAGTAGTCCTTTGACAGCCTCTCTTACTGTGGTGTAACTATGGAGGATGGCGAGTTGGTAATTCGGTTGCCAGGGCGATCTGACTCACCTGTGGGCAATAGGAGTTGCGGTGCTGGTGGTGGGTTTGGTGAGACGTTGGTGTTGCGGCACAAAGAGGTTCATCACTTCTTCTTCGTCCCGTTCAGGGAGCAGCCCATCTACAGCACGAGGGCCCACGTCTTCCAGATTGACCCCAACACCAAGAAGAACTGGTTGCCCACCAGCAAGCATGCCGTCACTGTGTCCTACTTCTACGACAGTACGCGCAATGTCTACCGCATCATCAGCCTGGATGGCACCAAGGCAATAATCAACAGCACCATCAGTCCCAACATGACGTTCACAAAGACGTCACAGAAGTTTGGCCAGTGGGCTGACAGTCGAGCTAACACTGTCTACGGCCTGGGATTCTCCACTGAGCATCATCTAGCCAAGTTTGCAGAGAAGTTTGCAGAGTATAAAGAAGCAGCACGGCTCGCTAAAGAGAAGAGTCAAGAAAAGATGGAGATGGCCACGTCTCCTTCTCAGGAGTCTCCAGGCGGCGAGCTTTCGTCACCTTTGACCCCAGTGACTCCGCCCATGGAAAACATCAACGGCACAGATGACATCTGTGACACGACTCCCAACTCAGACACGCGTCCAGAGCCGTCTCAGAACGCACTGGCCTTCGCACACAGCCCTGTCATGACAAAACACTGGGAGGCTGAGCTGGAGGCACTAAAGGGGAACAATGCCAAGCTCACGGCAGCTCTGCTGGAGTCCACAGCCAACGTCAAACAGTGGAAACAACAACTGGCTGCCTACCAGGAGGAGGCCGAGAGACTACACAAACGGGTGACGGAGCTCGAATGCCAGAGCAACCAAACCCCGGCTATCAAATCCCAGAAGACTGAACTCAACCAAACCATAGAGGAACTGGAGAATATGCTAAGGGATAaagaagagGAAATGGAAAAGTTTAAAGAGGAATTGGAAAACATGAATGACCTGATGGAGCAGAAAGACACCCTTACCCAGAAACTTGAGGAGACGGAGCTGCGCAGTCGGGTGCTAGAGGAGCAGCTGGCGGGGGCCGAGCAGCGGCTGGAGGAGAACCAGGAGGAGCAGGAGAATTTCAGGAAGAGCCTGCGGacgctgctggagctgctggacGGCAAGATCTTTGAGCTGACGGAGCTCAGAGACACCTTGGCTCGGCTCATAGAGGAGGCCAGCTAGAGACGGAGCTGCCTAATCTTCACAGACAGAGCCATATGATCATTTACACCCTGAGACCCCGAACTCACCCACACCGATTCTACCCACCACGCCCCACCTTCCTCCTATACCCCACACACATCAAAACTGAGACACTACACTGCCCCAATTCTGATTTTGCTCAAAAAGGGCAGCTAACTCCCCTAATCAAGCTCCCAATAATCGCAGGCACTCCTGTAGTTCAAGACAACGCAGGGACTACCTCATCTTgccttctgattggctggtgtAGGTGTAACCTCGGTTGAATTGATCTCTCCAGAAGTAGGGATGCCTGTCTTGGCACACTGcaactgccccccccccccaaacccacCCACACACTCTCAAAGAGTTAACTTGAGATCTGTGCCTCAGTGCCACCTGCTGTTTGACTTGGAGAGCTGCACCACAGCTTGCAgcatcacatcacacacacataccccttttctttctctctgaacTGCCCCCTCCAAGGGGAATGTTGAAAGTCACGAGGAAATAATTGCTGTTAAGACTCAGAGAACTGCGCCAAAGCTGCCAAATCCCCCCAAAATATTGTCCTCTAACTAGCAGATGCTTtgatccaaagtgacttactgtACAGAGAAGTGCTGAACAGAGAAACCATGCTTGAGCTCAGGCTGCCAGCGGAGTGTCAGTGGAAACAGAGAATTAAAGGATGGCTCTCAACAAACCAGTCTTACCTATTTACACAGGGCTGCTGGGAAATGAAGTTTGGTTTACGCATATATCCTATATATTCACACCCTATATAAAATCCTACATGATAGCTGAGTATTGAATCTTCCAGAGGCATTGTTCGTGCCACATAGAAATTTTAGAGGGTGTGTACCCATGTTAGATTCAACATGAGAATTCCTGTATCCAGACTGCTTCCACCGCCACAGACACCTGACCTGTCTTCCTGCCAAActcagtgtggtgtgtgttccCAAACAAGGCCTGACCTGCGACATAACGCGTGCCTTCAAAGGACATATGCGTGGACACATGTTTgtatataatatgtgtgtgtaatttgtgCTGTGAGAGGAAGACCCTGTTTTTGGACATCAAGGcccacacacttacacacacagacagacagacagacagacagacacacacacacacacacacatacacacacacactgagcaatACCAGACAGGCTCTATACAACACCTCTATTCATCTCTATCAGGTACTCTACTCAGTGGACTCATGCAGATAGGTCAAATGCATCTCAGCTGATTCCCCCTGTCCAACAGAAAGTGAACTACTGTTGACCGCGAACCTGTGTGGCAGCCCTTTCTGGTCGAAGTAGTGCATCATGAAGGGCTTATAGACTGTCATCTAGGTGTTCGTAAATCTCCACCCTCAGTGGAACTGGCCACAGTTTTTCACTTACATTGAGAACTGTACTCAGTTTCTATTCTTTTTTACGCTGGATAAAACACTGATGATATAATTATAGAACTGTATAAGACAACTTTCTACTCATGACATTGtaaatgaatggatggataACTCAAATGCAGTAACGCCCTGCATTGGCTTATTGTTGTGTATTAACCCACGGAAAAGTATTGCATAGTTATTATAGAATATCTAGTCTGtaggaaaacaatgaaaacctcttcaatatatatttcaaatgcgtaacaacacaatgtaaacaCATAGTGTTAAACGTTCTGTACCAAAACTTACACTTCTAAAGCAGCTCCTGTACCAGTAAAATCCAAAACTGCATCTTAAAATCTCTTTCTTTATAATCACTCAATTTCTAAAAAGCTATATTCTCACATGAAATGCtacttatatttttttttcaaatgagcaCCCTGTTTGCACTGTTATAACACTGTTGTAACTACATTATATATCGAGAGATTTGCATTAAATACTAGCACAGCCTAATTCTGTACTTAAAATATTGTAGTTAGTTACACAGGTTAATACACTGGAATAAGTCCCATGTAAAGGAAGTTgcccaattttttttctttctggttTATCTTTGACAGTCGAATGACAAGAGATGGAATACCTTGATATTAATGCTATTGTTAATGATAATGAATGCCTTTGTACAGTAGTGGATAATAAGCTTTTCATTCTCCTGTTTTGTAACTTATGGTATTTAAATGTaggtattattattgtatttagaggtaTGAGAAGACTGGCAATATTTTTGACTATTTAAAGTAATTTTGAACTTGATGATATTAAAGAGGTACCTCAGGCCAATGATGTTCGTAGATTGGTGAGACTTGAGTGTTTGCAGGTGAAAGGATTtaccaaatgctggtgaaaaaCGATCAGGAGACACACCTGTTGGTGCTTCAGCCAAACTAAATCCTTTGTTGAATTCAAACAAAGACAGCCCTACCAGGCTAAGAACACACATCTGTGAACTGAGAAATGCTATGTTTTATATTCAAATACAGTGACAGCAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83475 lncRNA downstream 34110 17931742 ~ 17933468 (-) True G62339
TU83469 lncRNA downstream 40623 17914926 ~ 17926955 (-) True G62333
XR_005639419.1 lncRNA downstream 67751 17896791 ~ 17899827 (-) True LOC120560086
XR_005639420.1 lncRNA downstream 67752 17896791 ~ 17899826 (-) False LOC120560086
TU83447 lncRNA downstream 125126 17841719 ~ 17842452 (-) True G62318
TU83567 lncRNA upstream 71672 18055251 ~ 18055851 (-) False G62399
TU83570 lncRNA upstream 71672 18055251 ~ 18056143 (-) True G62399
TU83626 lncRNA upstream 251026 18234605 ~ 18235686 (-) True G62452
TU83677 lncRNA upstream 320578 18304157 ~ 18304356 (-) True G62493
TU83781 lncRNA upstream 346024 18329603 ~ 18329892 (-) True G62567
XM_039803594.1 mRNA downstream 23028 17940602 ~ 17944550 (-) True cenph
XM_039803593.1 mRNA downstream 27038 17935376 ~ 17940540 (-) True dimt1l
XM_039804606.1 mRNA downstream 57862 17901876 ~ 17909716 (-) False unc45b
XM_039804605.1 mRNA downstream 58219 17900473 ~ 17909359 (-) True unc45b
XM_039803674.1 mRNA downstream 84487 17853406 ~ 17883091 (-) False pip5k1bb
XM_039803168.1 mRNA upstream 28723 18012302 ~ 18017408 (-) False mtx3
XM_039803166.1 mRNA upstream 28724 18012303 ~ 18017408 (-) True mtx3
XM_039803167.1 mRNA upstream 28725 18012304 ~ 18017408 (-) False mtx3
XM_039803165.1 mRNA upstream 45860 18029439 ~ 18050457 (-) True serinc5
XM_039803154.1 mRNA upstream 75981 18059560 ~ 18065397 (-) True cdk7
unassigned_transcript_262 other downstream 7694 17959813 ~ 17959884 (-) True trnaq-cug_5
XR_005639516.1 other downstream 71681 17859355 ~ 17895897 (-) False pip5k1bb
XR_005639575.1 other downstream 362458 17598088 ~ 17605120 (-) False LOC120561236
TU83669 other upstream 309677 18293256 ~ 18296678 (-) False LOC120560503
XR_005639489.1 other upstream 315322 18298901 ~ 18303862 (-) False fancg
TU83796 other upstream 394023 18377602 ~ 18380502 (-) True G62580
TU83799 other upstream 399426 18383005 ~ 18386269 (-) True G62582
TU83818 other upstream 456330 18439909 ~ 18442825 (-) False iqcd

Expression Profile