RNA id: XM_039803329.1


Basic Information

Item Value
RNA id XM_039803329.1
length 8391
RNA type mRNA
GC content 0.51
exon number 26
gene id pdzd2
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 4271504 ~ 4343670 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCATCCGAGCCTGGGCGGCCGAATGAAAGCTCATCAATCCCCTAAAGCGTATAATACCCATACCCGCTGAGAAAGAGAAACGCAGTGCGTTCATAACTGTAATTCAACACGTTTCATACTTTTCCCGCTCCTCGGATGGTTTTCCTACAGTGGATATCTGTTGAGGGGACTTTCGGACTCTGAAGCTTTTTTCAAGCTGAGCGCAGCTACTTTATTCTTGGACGGATTTAACCGTGAAGACGCTTTTTTACAAACTGTGAACGTCTCATCGTCAGTGTTTGGACCCAGGATCGGGAGCCTTTGAAGTGCACGGCCATGTAGCCCGAAGGACATGGCCTGATGCTGCAGACACCACAGCAGACATAGCCTGCCAGTAATCCGATACTTTCCACCCTGGCTCATCTGGAAATCTCTGACTAGAGTTTGATCAGTTTTTCTGCAGCCCCCCTCTCTTAGAGATGGATTTGGGGCTGTCAGCCCACACTGGTTCCTGTGCCTGCACTAACTGTTGGAAGCATCGGGGTGGCTGTTGGTGAGGGACACCCAACAGGCCCAGGATGCCAGGATGCCCATCACTCAGGACAACGCCCTCAGCATCCTCCCACTGCTGGAGAACTGGCACGGGGCTCAGACCACAAGATCACAGCAGGACCACAACCTGAATCAAGACAATTCTGGCTACAAGcAGGTGGATCAGGACTCCTACCAGAATGGGGAAGGCGATAGTGTGTGCAGTAGCAGCAGTGTTAACAGTGTTAATGTGGAGGACATGACCCTGTGTCTGGCTGCCATTCACAAGTTGATGGAGTACATTAGGTTCAACTTCTTGGAGGGGGACACAGCTCCGTCAGCCAGCCCTTCCTCCTGCAGGGAGGGGCTAGACGTCGAGGTTCATGCCGTTTCTCTCAGTAAGGACGAGGGGGATAGCGCCGAGTTTGGCCTCAGCTTTGGGAACATCCCTATTTTCGGGGACCCTGATGGGAGAAAGAAGGGAGGCCCGAGGAGAAGGAGGGACCAGGGCCCCATCATGGATGTGGGCTGCATCTGGGTGACAGAGGTGAGGAAGAAGAGCCCAGCAGCCCGCTGTGGGGGGATCAAACTGAGAGACGAACTGCTGTCACTGAACGGACAGCTGATGGTGGGAGTAGATGTCAGTGGAGCCAGTTACCTGGCTGACCAGTGCTGGAATGGAGGCTGTATCTACCTGATCATGCTGCGGCGAGTAAAGCGAAAGGCTCCTCCCCCTCCCGGTAACGCGAATGGCAGCGGCAGCACCCCTGTCAGCAGTGACAGCTTTGAAGACCAGCAGCAGGCCAGAGCTACTTCTGAGTCCTCTGACAACTCTGCAAACTGCAAACGCACGCGCAAGCTTGGTGTCATATCCCGATCGTCCTTTACCCGAGACAAAATGGACACTACCGACTCAGGACTCCAGACCTGTTACAACGGCTACAATGGCTCTTCTGTCCCCACCGATGCAGCAGTCAGTCCTCCGGGAGAGGACTTCGGCTGCATCCTGTCCACATCCACATCCACAGAGGAAAGCCCAGACGCCTTTCCTAAGGCCAGAACTCTTCCCCAGCGTCTACACGGTGGAGGCACTGCCACCCTGCCTGCAAGGTGTCACAGTCAGCTGTTAGAATGCAAAATGGATTCTTTCAGCAGTGAACCTTCCAGCCAGCCCAGAGAGGGCAGCCACATCTGGAAGATGCACATGGTGAAGGGCGAGGAGGGCCTGGGCATACAGATAACAGGGGGGCGTGGCTCCAAGCGCTCTCCGCATGGCATCATCATAACTCATGTAGAGAAGGCGGGCGCCATTCACAGGGACGGTCGTCTTCAGGCTGGGGATGAGTTGCTGATGATTAACGGTCAGTCTCTGGTGGGTCTCACTCATCAGGAGGCTGTTAATATCCTCCGCTCCACTTCTGGTCTGGTTCAGCTGGTGGTGGCCAGCAGgGAGGAGTCAGATGTGGGTTTTGAGCGCTTCCCTTCCACCAGTCTGCCAGACCTGGTCAGCACCTGCAACTCCTTGTCCTCCCTATCTCAGACGGCCCCCTCTCGCTCCCCCCAGACCTCCAACTGCAGCAACCCCTACCTGGTACACATAGATCacatgTTGACTAACTTGGAGAAACTAGAAGGAAAAAGTCCGGGAGAGGTCCCCAAAGGATCCTGTGCCAGCCCCACACCTATGAAGAACTGCAGTCGATCCCAGGGGGGAAACAGTCGCTTGGAGTCAGTGGGCGAGGACGATGAGCTGTTTGTGGAGAATGGTGTGAGCAGCGGTGAAGTGGTGGAGAAGCCTCCGCCCGGCCGACGTAAACACTCCTTACCTCAACAACTAGATACTGCTGGAGTGAGACAGGAGTATCAGATAATTAAGAAATCAACCCGCTCCCTGAGCACCATTCAAGTGGAGTCTCCATGGCGACTGGCACAGCCATCCATTATCTCCAGTATAGTGCTGATGAAAGGCCAGGGCAAGGGCCTAGGATTCAGTATTGTTGGTGGGCAGGACTCTGCACGTGGTCAGATGGGGATTTTTGTCAAAACCATTTTCCCTCATGGAGCTGCAGCAGCCGATGGACGGCTGAAAGAGGGAGATGAGATTCTGGAAGTGAATGGAGAGTCTCTCCAAGGACTCACACACCAACAGGCCATCCAGACCTTCAAGCAACTGAAAAAAGGTGTAGTGACACTGACAATACGAACCCGTCTGCGCAGTCCCAGCATGACGCCCTGCCCAACCCCCACCCTGCTCAGCCGCTCCAGCTCACCCAACTCCAACACCAGCGGGGGAACACCTGTCCCCTCAGGGCTTGAAGAGGCTGACAGCCACAGGGGCCCCGGGCCGGGTCCAAAAGACTGCATCATCATGGAGGTCACACTTAACAAAGAGCCTGGCGTTGGTCTTGGGATTGGAGTTTGCTGTCTGACCCTGGAGAACTCTGCTCCTGGCATCTACATCCACAGCCTGGCGCTGGGATCTGTGGCCAAGATGGACGGCAGGCTCAGCCGTGGAGATCAGATCCTGGAGGTGGACTCGGTCAGTCTGCGTCATGCTGCTCTCAGCGAGGCCTACGCCATCCTCAGTGAATGTGGCCCTGGACCGGTCAGTCTCATCATCAGCAGGCATCCTAACCCCAAGGTATCAGAACAGGAGATGGATCACATGATAGCTCGAtccacacacagggacaaaatGAGCAAAAACAGACAATCCTCTCACTCCCAAGGTGTGTCCTGTAAGAGCCCCTCCCCAGCGATGAAGGACAGGCAGGGAGACGGCTCCCCCACTCTCAGCTGGACCATGAAGAGATTCCTTGAGCCTGCCAGTAGACAGGGGTCTCTGAGTTCAGAGACGGAGTTATCTCAGTACTTCTCCCAGGACTCTTCCAGCCACTCCTTCTTGTCTGAATCCATTCTGATGGGCTCCAACAGTGAAGAGGCACTCCACCAGCAGAGCTACAGTACTTCCATGGATGACAACTCATCACAGCCACACGCATTCACCTCTGTAACAGAAGTGGCGAGTGACCCTGTGTACAACACATCGCAAGACAAGATCCCTGTTCCTCTCAGTCACCATGCAGAGGCAGTGTGCCAGCCCATCGCTGTCTCCAGCCCCACCTCTGTGCGAAGCCCACTGCTCCGTCAGCGCCGCCTCATGTGCTTCGAGGATGAGCTCAGCGATGGCGAGAACTCCGACAACGCTAGGAACACCAGGCTCTTCCACAGCCCAACAAAATCTGACTCTGTCAACTTCAGTGATGCCCAAGCATCCGAAATGTCCAAAAGTGGTTCAGCAGTTGTAAGTGCTACATCGTCGTTAGATATAAATGGAAACCGTGACGATGGTAGGGATTTGCAGAGGTGTGGAAGCGACGATGTGACAACACCACTCTATGGTAGTTTCTCACAGTGTGAGGAAGGTAAGTCAGAGTCACCTGGTTCAAAGTCACCCTTCATGCCTATTCGCAACGCAGGAGGGTCAAGCAGTATGGGCTCCGGGCCCAGTAATTTGACCATCAATAGTGAGAACTATACAAACCAAGATGATGGACAGTTGGAGTCAAAGCGCTCCCCCAAGCTTGAGCATAAAGCAGTGACACGGGTCAAAAGTATGATGAGCATTGAAGCACCAAACTTGCCCCAACAGCAAAAGCCCAAAGTGGATGAGCCCTCTCCAGGCTCGGGCCCATCCCAGCCCCCTTCCCTTGTCACACCGTGTGGGAGAAACCCCAAGCCTGCGGGTGGGTTGGTACCCCATCAGCACTGTAAGAAGGGAGATGCCAGTGAGCTTGTGGGTGTTTGTACCATCGACACTGTGACCCTGAAGAGAAGCGAGGATGAGTCCTTTGGTCTCGACCTGGAGATTATGTCATCCCCTCTGAAAGTTGTCGTTGCTGGGCTAAAGCCTGGAGGTGCGGCAGAAAAGGAATCTACCGGCAAGCTGTGTCGTGGAGATGAGATTGTAAAAATTGGGGAAAAGTCGGTGCGCTCGTCTTCTTACCTCGAAATCTGTGAGCTCATGCACAACCTTCCCATCACATTGTCCTTGGAAATCAAGAGACCAGTTTCAGCTGTAGATCGACTGTCCAGTTTGATAATGTCATCAGGGAGCAGTGATGGAGCCACTAGACTGAACCCAGCCAGATCTGTTCAGGGGACTTCTAATGAAGGACAAGTTACAAGTGCAAATTCTGGGAATTCCAACCACACAAGCCAAACAGTTCATAACTTCGAAATACCCATCACCAATATAGATGACATTTTATCAGAAGTGACCagtgataaaaacacacacatcaaatgTGATGAGCCTTTATCCTCCTGTTCAAGCGAAAAGACAATAACCCTGTCTGAGAAAGCTGGCATACAGGTTCCAATACAGTCCGGTCCCCTGGACTGTTCCATCTTGGATGCAGGAAGTGAAAAAGGTGCCATGTCTCCTGTGGAGACAACACATGCGAACCAACTAAAGGAAAGCAGCTCAGCTGTTTTCAATGAATCATGTCCCAAAAGGCCTGATGATGCTGGTCCTAAGTATATGTACCCCATAGAAGATGACAGTGATGATGACAGTAACTCCACCACTGACAGCAGTGTAATGGTCAATACGATGACCAGTGGTGGTAGTCTTCATGAGCCCTCCTCAGATGAGGAGGAAGTGGAGCTTTGTTCATTTGATGCCCAGCAACCTGATGCTGGTGGACTCTCACATTTAAGCCAGTCACCAAAAGGGTCTTCATCTTTTCAGCATGCTAGCAGTCCGAACACAAACCTGGACCAGAGCTTTGATGTGTTGCATGTCTCTGCTGATGTCGCACTGACAAACAAAGAAAACTTTGTTACAACTACCCAATACTCGCAGCTCTCTCAGTTGTTAGCGCTCTCCTCTACAGAGCAACTATGCCAATCTTTCGACATTGCAATACCTGTGTCTTCTATGAAGTGCCACAATAATAGTGCCACTGAATCCTGTGACCAAGTTCAAGCATGTGTGGCATCCAGTCCTGGAAGTCTAAGCACTTACAGAAGCCCCTCTCCTCCAGTTAGCCACAGTGCCACACAAGGGACTACTGAAAACGTGCATGCAGATGCCTCACTGACCTCAGCTTTATTGAAGCACTTGGATATACAAACACCCCATTTATCTTCAATGGAATCCGAGACCTCGGATTCAAACATCAGCAGATCGGATAAAAGGGTGTCAGCATCAATGACAAACAAAGAGAGAGTATTGGAGTGTAGAACAAATTTAAACCCACATGCTATCTCTGTGCTTAAGAACACCTCTGGGCTAAAACTCCTTGATAATTTAGACCACCCCGTGTGGAGTAGTAACTTTAAACTCCAGGTTGAAACTCAAATCAGACCAAACACTAGTGCTCCCAAATTAAAGGGTCTAAGTATGAAGAGTAAGAAGAAACCACAGGAGGAGCTTCTCCAAAAAACTACCAGGAGTGAAAGTCCACTTCCTTTAAACATCAATGCTTCCTCGAACCTGTCAACAAAATTACCACCAACAGCAACCATGTCCAGCTTTTTGAAGACCAATAACCAGCCTGATATCAACAGCAGTCTTGATATGCACAAAGAAGGTGCCAGATGGCAAGTTACAGCTGAGCCGTTCCCTTCAGGTAGCACATTACAAACTGTACAAATGGCCAAAGAGAAGGACATCCATTTGGGCTCCAAAGCACCAGCCAAATCACAGAGCCAATCCCACCCCCCTGCTACTCAGAGAACATTTATAGAAGTTCGACTGTCTTCGTTATCTGGTTCATCACCGCCAGTTATGGCACACAATGATACAGTGAATTCAAAAGACTCTAAATCCCCTCAAAGAGGCACATATGCAAGATTAGCGCCCATGCTTTCTCCTGCCAACCCCACAGTAGGAAAAACTAATGGCATGGTCAGTACCACAGTAATTAATTCATTGTGTTCTACTAAATATGAAACTAATTCAACTACAAAACCCAGTAGTATTGTGGAGACAAGTGAGACCCTAAAGTCCAGCACATCCAGACTGTACATTAAGACAATGGAAAGGCAAAGCTTCTCCACGGACACTGCCTTGTCTGCAGACTACAATCCCTTCTCTGTACGACATAAGATAAAGTCCTTTGAAAACCTGGCTCACTTTGATAAGCCGGTGGCTAAAAGCAGTGACATTCAGTCTTATGCTCTGGCATATAGAGCCTCACTTAACCAAAGGATTGCTGGTTATATGGGGTTGGTTAATTCTATTGACTGCCGGGCACGGCAAAAGAGTTTTAGTTCTTATGTGGAGAATCTACTCCCTACCACACCCTGCTCACCTCTTCTTGGTAAATCTCCATCTAGCATTACACTGATAAACCTTGAGCTTCCACATTCAAGCTGTGACACAGCTCCCCTGACTGAAGACAATAGGGAGGCTCAAGTTCAGAAAGCTCTAGATGGGACAGCACCACAGACCCCTCAGGTGCTGCGGAGGAAACCTGGCAAACTTCCCCGCTGCAGGTTGCGGCAGCTCAGGGCTCTCAGTATGCCCGAATTGGAAAAACTATGCACAGAGGACTTTACCAGAGACCATGGTACAGCCGTAGATACAACTGAGCCTGGCAGCTATCCCGCTATACTCACGGAAACCACAGTGACTAAGAGCTGTCCACCTGCTGCAAGCCTGGATGTGACAACAGTTGGTGTGAACAGGGTGAGCCGAGGTGATCCTGAATCCACTGAAAAGACTCCTCAAGGAACCGCAGAGAGCCATGGACAACAACCTGGCTGGTCAATCAGTTTAAAGGAGCTGGCTGCgtctcctgtggctcggcataagCTGCAAACACTGCTGTCCTTCCCGACAGTGAAATCCTACGTGTCGGCCCTGCTGCAGGAGGCCCAGGCCCTCTCAGAGGTTAACGATAACACTCAGCTTGTGTTCCTGAGCAAAGAAGAAGGCTCAGGGCTTGGTTTCAGTATTGCTGGTGGAGTCGACCTGGAGCAGAAGGCAATCACTGTTCATCGGGTCTTCACCAAAGGAACAGCTAGCCTCGAAGGCACAATCCAGAGAGGTGACAAAATTTTATCCATAAATGGCACAAGTCTGGGAGGTAAAACCCATGGAGAGGCTGTGTCTTGCCTTCATCAAGCCAGGCTGTCCAATCAAGCCTTAGTCGTCATTTGGAGAGACAAGGACAGTGGACCGAGTGTCTCTGATATGTATGACTCGGCTGGCCAGTCAATGAGGATGTGTTCTGCCAGACAGAAGTCTGTGGAAGCTGGAGCAGTGGTGGATGTGGGTCCAGACGGGGCTGTGACGGTGGAGCTTCACAAGTCTTCTGCTGGCCTGGGGTTCAGTCTGGAAGGGGGGAAGTCCTCAAGCCACGGAGACCGGCCTCTCATTGTCAAACGCATCTTTAAAGGAGGAGCGGCAGAGCTGTCCGGCAGTGTCCACGTTGGCGATGAAGTTCTGTCTATCAACGGCTGTTCTCTGGAGGGCCTCATGCACCACGATGCCTGGAAAATCATCAAAGCCACTAACGAGGGGCCCAACCACCTCCTCATCCGCAAGCCCAGGACCTAACTGTAAAGAACAAGGAAAAAGAAAGCTCCTGACAAGGACCAATGTGAAACAGTCCTCTGAAACAGGGTGGGGACAAACAGTGGAAACGAGGATTTTCTGACAGACTTCATTtgagttttttgtgttttgtctggtTACACGTATTTGTACTTAGAAATAGGTCAGATTGGATGGACCACTAACTATTGTGGTGTACATTGCTGTATTATGATTTATTTCAGATGGGAAGTGCAGTTTGTTTACAATAGATTAACTTTGGAACACTAaataaaactttcttttttttaaataaagtcagTATGTGAAAAGA

Function

GO: NA

KEGG:

id description
K24058 PDZD2; PDZ domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79389 lncRNA upstream 138440 4132848 ~ 4133064 (+) True G59093
TU79333 lncRNA upstream 310185 3961060 ~ 3961319 (+) True G59042
TU79323 lncRNA upstream 375263 3895670 ~ 3896241 (+) True G59032
TU79324 lncRNA upstream 379651 3891045 ~ 3891853 (+) True G59033
XR_005639569.1 lncRNA upstream 433825 3837307 ~ 3837679 (+) True LOC120561177
TU79470 lncRNA downstream 5896 4349566 ~ 4349919 (+) True G59163
TU79489 lncRNA downstream 89423 4433093 ~ 4435260 (+) True G59174
TU79492 lncRNA downstream 117694 4461364 ~ 4462824 (+) True G59175
TU79554 lncRNA downstream 210351 4554021 ~ 4555654 (+) True G59217
TU79552 lncRNA downstream 210872 4554542 ~ 4555451 (+) False G59217
XM_039803676.1 mRNA upstream 44472 4226036 ~ 4227032 (+) True LOC120560812
XM_039804152.1 mRNA upstream 63005 4199523 ~ 4208499 (+) True si:dkey-3h3.3
XM_039804151.1 mRNA upstream 63005 4200851 ~ 4208499 (+) False si:dkey-3h3.3
XM_039802090.1 mRNA upstream 381849 3869033 ~ 3889655 (+) True ccdc125
XM_039802033.1 mRNA downstream 13424 4357094 ~ 4388795 (+) True npr3
XM_039802795.1 mRNA downstream 93863 4437533 ~ 4456244 (+) True araf
XM_039802391.1 mRNA downstream 186384 4530054 ~ 4531159 (+) True mrpl41
XM_039803219.1 mRNA downstream 227713 4571383 ~ 4617968 (+) True LOC120560573
XM_039803221.1 mRNA downstream 227713 4571383 ~ 4617968 (+) False LOC120560573
TU79382 other upstream 153873 4117279 ~ 4117631 (+) True G59086
TU78941 other upstream 1391760 2878401 ~ 2879744 (+) False lman2lb
TU78000 other upstream 4059134 210742 ~ 212370 (+) True LOC120560799
TU79482 other downstream 80471 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 88501 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 88998 4432668 ~ 4432739 (+) True trnaq-uug_2
TU79509 other downstream 186440 4530110 ~ 4531165 (+) False mrpl41
TU79671 other downstream 709596 5053266 ~ 5351131 (+) False fbrsl1

Expression Profile