RNA id: XR_005639500.1


Basic Information

Item Value
RNA id XR_005639500.1
length 5409
RNA type transcript
GC content 0.50
exon number 33
gene id cltcl1
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 26614237 ~ 26644167 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CtcggagggaaaaaaaagaatccacaACACTGGGAGCTTATGAGAAGCCATTACTTACAATAACTCAGCGAGGGTTTTTAGGACAGCCCCGAATCCTTACAAGGCTCGTGGATGAACTGGTTTACGCACCAGTAGCAGGCTAGTTGAAGTGGACTAGTTTTCTTGGCGGAGGTGCGGAGTTTATGATTCAGGATTCAGGATTGGTGTAGGGGGACTACTGAATGGGAGCAGTCACTGGATTCGTGTGATACCAACGCAAGCCAACCAGACCACCTAGGCTACTGCCCATCATATCTGACTTTTGGGGACGTTTAGGGCACAAACAGAACAAGATCACCGCTATTCCTCCTTCTGTCCCCTTCCCCTTTCCTTTCTCACGGATTCTTCAGAAAGATAAATTCTCCAGACATGGCTCAGATACTGCCGATACGATTTCAGGAACATCTGCAGTTGCAGAACATGGGCGTGAACCCAGCCAACATTGGGTTCAGCTATCTGACCCTGGAGTCGGACAAGTTCATCTGCATCAGAGAGAAGGTGGGCGATCAGAACCAGGTAGTGATTGTGGATATGTCCGACCCCACCAACCCAATCAGGAGACCAATCTCTGCCGACAGTGCCATCATGAATCCCGCCAGCAAGGTCATTGCCCTGAAAGACGCTGCAAAGACGCTGCAGATCTTCAACATTGAGATGAAGAGTAAGGTGAAGGCTCACACTATGACAGAGGAGGTCATGTTCTGGAAGTGGATATCGGTAAACACTGTTGCCTTGGTGACAGATACGGCTGTCTTTCACTGGAGCATGGAGGGGGATTCCCAACCCACCAAAGTGTTTGATCGGCACGCTAGTCTGGCGGGATGTCAGATCATCAACTACAGAACTGACGAACAACAGAAATGGCTACTGCTGATAGGGATTTCTGCACAGCAAAACCGTGTGGTTGGGGCAATGCAGCTGTATTCTGTTGACAGGAAAGTGTCCCAGCCCATTGAGGGCCACGCCGCTGCCTTCGGGGAGTTCAAAGTGGAGGGAAATGCCAAACCCTCCACCCTTTTCTGCTTTGCTGTGCGCTCACAGGCTGGGGGAAAGTTGCACATTATTGAAGTTGGTCAGCCAGCTGCAGGAAACCAGCCATTTACTAAGAAAGCAGTAGATGTGTTTTTCCCTCCAGAGGCTCAGACAGACTTTCCTGTAGCTATGCAGATTGGTAATAAGCACGGTGTAATATATTTGATCACAAAGTACGGGTACATTCATCTGTATGACCTTGAGTCTGGAGTGTGCATCTACATGAACCGAATCAGTGCAGAGACCATCTTTGTAACAGCCCCTCATGAAGCCACCTCTGGAATTATTGGGGTCAACAAGAAGGGACAGgtgttgtcagtgtgtgttgaGGAGGAAAACATTGTCAACTATGCCACCAACGTCCTGCAGAACCCTGATCTAGCCTTGAGGATGGCTGTTAGGTCCAACCTTGCTGGGGCTGAGGAGATTTTTGCCAGGAAGTTCAACACTCTGTTTGCCCAGGGAAGTTATTCAGAATCTGCAAAGATTGCTGCATCAGCACCCAAGGGTATCCTACGGACAGCAGAAACCATCCGTAAGTTTCAGAGTGTCCCGGCCCAGCCAGGTCAGGCCTCTCCACTGTTGCAGTACTTTGGTATTCTGCTGGACCAGGGCCAGCTTAACAAGTTTGAGTCTCTGGAGCTGTGCAGGCCAGTCCTACAGCAGGGCCGCAAGCAACTACTGGAGAAATGGCTGAAGGAGGACAAGCTGGAGTGCTCAGAGGAGCTGGGAGACCTGGTGAAGGCTTCTGACCCTACCCTCGCTCTTAGTGTGTACCTCAGAGCTAACGTGCCCAACAAGGTCATCCAGTGCTTCGCTGAGACCGGCCAGTTCCAGAAGATTGTGCTGTATGCTAAAAAGGTTGGCTACACCCCAGACTGGGTGTTTTTGCTGAGAAATGTAATGCGTGTCAGTCCAGACCAGGGACTGCAGTTTGCCCAGATGCTGGTCCAGGATGAGGAGCCACTGGCCAACATCAACCAGATTGTAGACGTATTCATGGAGGGCAACCTGATCCAGCAGTGCACCTCCTTCCTGTTGGATGCTCTAAAGAACAACCGCCCAGCCGAAGGACACTTACATACACGTCTGCTTGAGATGAACCTCATACATGCCCCCCAGGTAGCAGATGCAATCCTGGGGAACCAGATGTTTACGCACTATGACCGTGCCCACGTTGCTCAGCTGTGTGAGAAGGCAGGTCTGCTGCAGAGAGCTCTTGAACACTACACCGACCTGTATGATATCAAACGAGCCGTGGTGCACACACATCTGCTCAACCCTGAGTGGCTGGTGAACTTCTTTGGCTCTTTATCAGTAGAAGACTCGTTGGAGTGTTTAAGGGCCATGTTGTCAGCTAACATCAGGCAGAACCTGCAGCTGTGTGTCCAGATAGCATCTAAGTATCATGAGCAGCTGGGGACTGAGGCATTAGTGGAGCTCTTTGAATCCTTCAAGAGTTATGAGGGCTTGTTTTACTTCCTTGGGTCGATTGTGAATTTCAGCCAGGAGCCTGACGTTCACTTTAAGTACATCCAGGCTGCCTGCAAAACAGGCCAGATCAAAGAAGTGGAGAGAATCTGTAGAGAGAGCAACTGCTACGACCCAGAGAGGGTTAAAAACTTCCTCAAGGAGGCCAAGCTAACAGACCAGCTTCCTCTCATCATTGTGTGTGATCGCTTTGACTTTGTCCACGACCTGGTGCTCTACCTCTACCGCAACAGTCTACAGAAATACATTGAAATCTACGTACAGAAAgtGAATCCCAGTCGTTTACCAGTGGTGATAGGCGGTCTGTTGGATGTCGACTGTGCTGAGGATGTCATTAAGAACCTGATCATGGTGGTCAGAGGGCAGTTTTCCACTGATGAGCTGGTAGAGGAGGTAGAGAAGAGGAATAGGTTAAAACTTCTATTGCCATGGCTGGAGTCCCGTATCCACGATGGATGTGAGGAGCCGGCTACCCACAATGCCCTGGCCAAGATCTACATTGACAGCAACAACACACCCGAACGCTTCCTGAAGGAGAACACGTTCTACGAAAGCGCCGTGGTCGGAAAATACTGCGAGAAGAGAGACCCTCACCTGGCCTGTGTGGCTTATGAGAGAGGACAGTGTGACCTGGAGCTCATCAAAGTGTGCAATGAGAACTCTTTATTCAAGAGTGAGGCTCGATATCTTGTGCGACGGAAAGATCCAGAGCTTTGGGCGAATGTGTTAGAAGAAAACAACCCCTTCAGAAGACAACTCatcgaccagGTGGTGCAGACAGCACTGTCAGAGACCCAGGACCCAGAGGAGGTGTCAGTCACAGTCAAGGCCTTCATGACTGCGGACCTGCCCAACGAGCTGATCGAACTGCTGGAGAAGATTGTACTTGATAACTCTGTCTTCAGTGAACACAGAAACCTCCAGAACCTGCTGATTTTGACAGCCATCAAGGCTGACCGCACTCGTGTGATGGAGTACATTAACAAGCTAGACAACTACGACGCTCCAGACATTGCTAATATTGCCATCAGCAATGAGCTCTTTGAAGAAGCGTTTGCCATTTTCAAGAAGTTTGATGTCAACACCTCAGCCATAcagGTATTGATAGAGCACATAGGGAACTTAGATCGTGCCTATGAGTTTGCCGAGCGCTGTAACGAGCCTGCGGTGTGGAGCCAGTTAGCCAGAGCTCAGCTACAAAGAGACCTGGTCAAGGAGGCCATTGACTCGTATATCAAAGCCGTTGACCCTTCAGCGTACATGGAGGTGGTCAACGCGGCCAGCAAGAACAATAACTGGGAAGACTTGGTTAAATTCCTTCAGATGGCTCGAAAGAAAGCGAGAGAGTCTTACGTGGAGACAGAGCTGATCTTTGCTTTAGCTAAAACGAACCGTCTGGCTGAGCTGGAAGAGTTTGTCAGTGGGCCAAACAATGCTCACATACAGCAGGTGGGCGATAGATGTTATGAAGAGGGAATGTATGAAGCAGCCAAGCTCTTGTACAACAATGTGTCCAACTTTGCTCGCCTCGCATCCACACTAGTCCACCTCGGAGAGTACCAGGCAGCTGTGGACAGCGCCAGGAAAGCCAACAGCACACGTACATGGAAGGAGGTGTGTTTTGCATGTGTGGATGGCGAGGAGTTTCGGCTGGCACAAATCTGCGGCCTTCACATAGTGATCCACGCTGACGAGCTGGAGGACCTGATCAGCTACTACCAGGACCGCGGGTACTTTGAGGAACTCATTGCTCTGCTGGAGGCTGCGCTGGGTCTGGAGAGGGCCCACATGGGCATGTTCACCGAGCTCGCCATCCTCTACTCAAAGTTCAAGCCTCAGAAGATGAGGGAGCACCTGGAGCTCTTCTGGTCCAGAGTCAACATCCCAAAGGTTCTTCGTGCAGCAGAGCAGTCTCATCTGTGGGCAGAGCTGGTTTTCCTCTATGATAAATATGAGGAGTTTGACAACGCTGCCATCACAATGATGTCTCATCCGACAGATGCTTGGAAAGAAGGGCTGTTCAAGGACATTATTGCCAAGGTTGCCAATGTGGAGTTGTACTATAAATGTCTTTCCTTCTACCTGGAATACAAACCCCTCTTTCTGAATGACCTGTTGACCATTCTGTCTCCGCGGTTGGACCACAGCCGAGCTGTCACATTTTTCAGCAAGATGAACCAGCTGAAGTTGATCAAGCCTTACCTGAGGTCTGTCCAGAATCACAACAACAAGTCCGTCAATGAAGCCCTCAACAACCTgctgacagaggaggaagaCTACCAGGGCCTGAGAGCATCCATCGATGCCTATGACAACTTTGATACCATTGGCCTGGCGCAGAGGTTAGAGAAACATGAACTGATTGAGTTCAGACGTATTGCTGCCTACCTGTACAAGGGCAACAACCGCTGGAGACAGAGTGTAGAGCTCTGCAAGAAGGACAAACTCTAcaagGATGCAATGCTGTACGTCGCAGAGTCTAAGGATACAGAGCTGGCAGAGACTCTGCTCCAGTGGTTCCTGGAGGAGGGCAGGAAGGAGTGCTTCGCTGCCTGCTTGTTCGCCTCCTATGACCTGCTGCACCCTGATGTAGTGCTGGAGCTGGCCTGGAGGCACAACATCATGGACTTTGCCATGCCATACTTCATCCAGGTCATGAGAGAGTACCTGACAAAGGTTTCTGATGTAGGAACCTAGCATGGACTGTAGACTGAGTACGGCCTAACTAGCTCTGGTCTTGGAGAGCTGTAGTGGTGGACAAACTGGAGGAGGCAGACAGCCAAAGGAAAACTGAAGAGGAAGTGACAGAGCCTCAGCCGATTGTGTTTGGCCAGCAGCTGATGTTGC

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030130 clathrin coat of trans-Golgi network vesicle cellular_component
GO:0030132 clathrin coat of coated pit cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86879 lncRNA upstream 33424 26572244 ~ 26580813 (+) True G64893
TU86818 lncRNA upstream 73601 26540415 ~ 26540636 (+) True G64841
TU86816 lncRNA upstream 74014 26538658 ~ 26540223 (+) True G64840
TU86815 lncRNA upstream 75696 26538268 ~ 26538541 (+) True G64839
TU86813 lncRNA upstream 76542 26535108 ~ 26537695 (+) True G64838
TU86926 lncRNA downstream 20286 26662767 ~ 26663526 (+) True G64930
TU86940 lncRNA downstream 40037 26682518 ~ 26684255 (+) True G64944
TU86951 lncRNA downstream 118910 26761391 ~ 26829185 (+) True G64949
TU86978 lncRNA downstream 251220 26893701 ~ 26896143 (+) True G64967
XR_005639508.1 lncRNA downstream 255421 26897902 ~ 26899558 (+) True LOC120560738
XM_039802156.1 mRNA upstream 6603 26597995 ~ 26607634 (+) True si:dkeyp-117b11.1
XM_039804082.1 mRNA upstream 16924 26585780 ~ 26597313 (+) False plat
XM_039804086.1 mRNA upstream 16924 26585780 ~ 26597313 (+) False plat
XM_039804087.1 mRNA upstream 16924 26585780 ~ 26597313 (+) False plat
XM_039804083.1 mRNA upstream 16924 26585787 ~ 26597313 (+) True plat
XM_039804533.1 mRNA downstream 2180 26644661 ~ 26661895 (+) True si:dkey-178e17.1
XM_039802270.1 mRNA downstream 24252 26666733 ~ 26679998 (+) True si:dkey-178e17.3
XM_039802271.1 mRNA downstream 24252 26666733 ~ 26679998 (+) False si:dkey-178e17.3
XM_039802267.1 mRNA downstream 44851 26687332 ~ 26719116 (+) True pi4kab
XM_039802266.1 mRNA downstream 44917 26687398 ~ 26719116 (+) False pi4kab
TU86790 other upstream 117851 26494335 ~ 26496386 (+) False c6h22orf39
TU86791 other upstream 117909 26494335 ~ 26496328 (+) False c6h22orf39
TU86793 other upstream 117976 26494335 ~ 26496261 (+) False c6h22orf39
TU86770 other upstream 199640 26412869 ~ 26414597 (+) True G64814
TU86550 other upstream 698708 25914382 ~ 25915529 (+) False LOC120560031
TU86927 other downstream 2539 26645020 ~ 26657969 (+) False si:dkey-178e17.1
TU87117 other downstream 562753 27205234 ~ 27301770 (+) True G65084
TU87830 other downstream 2707643 29350124 ~ 29351753 (+) False ubac1
XR_005639517.1 other downstream 3544367 30186848 ~ 30212108 (+) False fbxo21
TU88038 other downstream 3604406 30246887 ~ 30250240 (+) False LOC120560820

Expression Profile