RNA id: XM_039803344.1


Basic Information

Item Value
RNA id XM_039803344.1
length 4110
RNA type mRNA
GC content 0.45
exon number 20
gene id atp6v0a2b
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 19256786 ~ 19269028 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTTGACGGTATTCAACAGTGTGGAGTGACGTGGAGTACTATGGACATGGCCAGCGGACGTCTGCTAAAAACTTCGCAAACTATGAGAAGAGCCGTGACTGCATCTTTGGATATGTAACGTCAGCGGTCTTTATACCGGGTTGCCTCACAATTTCAGATTCAACTTTGACCAAACTAGTTTTTCATCCAAGAATTAACAACACAGCGCGCCGGGCTAGctcattaacgttagctaacgttaacaggAACAGCCTCTGTTGTAGCGATAGCTATCTAAAGTTAGCGTCATGCAAATCAAATAACGCTATTGTATTATCACCGTAGCCAAAACATGAAAAACTTGACTAATCGCAGTGCTATAGTGCTATAGTTCACAGAAACCTCAGTAGTTAGCTTGCTAATACTAGCACGTCGGCTTTACGTTAGCAGGTAAATATCCGAGCGAACTGTCAAAATGTGCTCTCTGCTCCGAGGTGAAGAGATGTGTCTGGCCCAACTGTTTCTGCAGTCTGGGTCAGCATACGACTGCATCAATGAACTTGGAGAACTGGGGCTTGTGGAGTTCAGAGACCTCAATCCCAGTGTTAACGCATTCCAACGAAAACATGTCAATGAGATCAAAAAGTgtgaagagatggagaggaTCCTTGGATACCTTCTGAGAGAGGTCAAGAAAGCAGATATTTCCCTGCCAGAAGGAGACGTTAACCCAGTGGCCCCTCTACCCAAGCACGTCATGGCTATAATGgaACAGCTGCAGAGGCTAGAAGTGGAGTTAGGTGAAGTCACCAGGAATAAAGAGAAGCTGCAGAGGAATCTGCTGGAGCTGACCgagtacacacacatgctgcgcACCACCCGCAACTTTGTTCAGAGAACGTCGGAGCGAGAGCCCCTACAAGTACAGTATGAGGAGTTTCCTTTCCTAGAAAAAGACACAATGATGGACTACAGCAGCATGCAGAGGCTAGGAGCCAAACTGGGTTTCATTTCTGGGCTTATTCAGAGGACGAAGATCGAGGCCTTCGAGCGGATGCTTTGGAGAGTGTGTAAAGGCTACACCATCCTCAGCTACGCTGAGGTCGAGGAGTATTTGGAAGATCCTGACACGGGTGAGCCTACCAAAAGTGTGGTGTTCCTGATCTCTTACTGGGGAGACCAAATTGGTCAGAAAGTGAAGAAGATCTGTGACTGTTACCACTGTCACTTGTATCCCTATCCCAGTAGCAATGAGGAGAGGAATGATGTTGTGGAAGGACTAAGAACTCGCATTCAGGACctgcatacaGTACTTCATAGGACAGATGACTATCTGAAACAGGTCTTGATGAAGGCCTCAGAATCCGTCTACACCTGGGTTATCCAGGTCAAGAAGATGAAGGCCATCTACTTTATTCTGAACCTGTGTAGCTTTGATGTTACTAACAAGTGTCTGATTGCTGAGGTGTGGTGTCCTGTCAATGATATTCCCATGCTGCGGAGGGCTCTAGAAGAAGGATCGAGAAAAAGCGGAGCGACAGTCCCTTCCTTTGTCAATCGTATCCCCACCAACGACACTCCCCCCACCCTGATAAGGACCAACAAATTTACCTCTGGCTTCCAGAACATCGTGGACGCCTATGGAGTTGGCAGTTACAGAGAGGTTAACCCTGCTCCTTTCACCATCATCACTTTCCCGTTCCTGTTTGCTGTGATGTTTGGGGATCTGGGTCATGGAGTTATCATGGCTCTGTTTGCTCTCTGGATGGTACTGTACGAGAACAACCGCAAACTTAAAAACACCAGGAATGAGATCTGGAACACATTCTTTGAGGGGCGTTATATCATCCTGATGATGGGCCTGTTCTCCATCTACACTGGCCTGATATATAACGACTGTTTCTCAAAGTCCCTTAACATCTTTGGTTCAGGATGGAGTGTGAAGGCCATGTTCGATGCCAAAGTGTGGAAGGATGCTGATATCCGTGGGAATCGTTTTCTCGCTCTGGATCCAAATGTTACGGGAGTTTTCAAAGGACCGTACCCTCTGGGAATTGACCCGATTTGGAACTTGGCATCCAACCGCCTTACATTTCTGAACTCCTATAAGATGAAGATGTCAGTGATATTGGGCGTCATACACATGAGCTTTGGGGTCATCCTGAGCACTTATAATCACTTGCACTTTAGGAAGAAGCACAGCCTATACCTGGTATTTCTCCCTGAGCTCCTGTTCCTGCTGTGTCTGTTTGGCTACCTGGTGTTCATGATATTCTACAAGTGGCTGGTCTTCACTGCTAAGGACTCCAGACTGGCTCCAAGCATCCTCATCCACTTCATTAACATGTTCCTCATGCAGGGTGATGGAGTGCAGCCCCTCTACCCGGGACAGACTGGCCTGCAGGTATTTTTGGTGGTCATTGCTGTTCTCTCTGTGCCGGTCTTACTCCTTGGGAAACCTGTCTACCTTTATTGGTTACACAATGGAAGCCACCGCCTAGGAATGTACAGGGGTTATGAGCGTGTGCGGCGTAACAGTGAAGAGGAGCTCTACCTGATGAGGGCAAATGATATGGAGGAGGGCAGCAGTCACAGTGATCTCTCCACCAGCGGGGAGCGCCAGACAGAGGAGTTTGACTTTGCAGATGAGTTCCTTCATCAGGCCATCCACACTATAGAGTATTGCCTGGGTTGCGTCTCCAACACAGCCTCCTACCTAAGGCTCTGGGCTCTGAGCCTGGCACATGCCCAGCTATCCGAGGTGCTCTGGACCATGGTAATGCGAGTAGGACTACGAATGGACACCAGTCTCGGGGTTTTTTTCCTGGTGCCTGTGTTTGGCCTGTTTGCCGTTCTCACTGTGTCCATCCTCCTAGTAATGGAGGGACTGTCTGCATTCCTTCATGCCCTGCGGCTGCACTGGGTGGAGTTTCAGAATAAATTCTACAGTGGGACTGGAGTCAAGTTTTGCCCcttttccttctctctgctgCCCTCCAGCTTTGAGCATGATGGCTTACTGTGAAGGGACTATCTGGTAATACTGTTAGGTGGTAAATTGAGCCAAAAAAGCCACCAGGTTCCCATGCTTATAAAGACATGTTCCAGAGAAGTCCTCAGGGGATTTAGATTTTTCTTGttgtcttttaaaaatgtaatgtaattaaatTCTTTGGTTAGCTTCACACACTGAAAACCCTGCCCTCCCGACAGTTTCAAGAACACAGACGGTACCGAGTGTACTGTTGAGGAATGTTTTCTTATTGCAAATTTATGTAACAGGGTGTTCTGTACTAAGATCAGTTTGCTTTACTGCACTTGTATGAAAAACCACATCCGCCAAAATTGgaataaatagttaaaagaGAGATAGAATTTTAGTATGAGATAATTTAACACTACAGTAATAAGCAAATAAATGGCCCCAAGGTTAGGTGACACAGCCAACACTTATTATGATAAATGTATtgctggttttggtcttttcatgggatttgctcattaaataacattaaataacattacattataacATTATCCTTATTTATTCATGTCTGTTTTCACCCATTTCTTCTCATCTAATTATTTGTGTCATAACTTTTGGCACAGTTGTGTACATTAATGCAgttattttttactttgttcactttgtttctgttttggCAGATCTGGTTTTCATACACTGGGTAGTGAGCCAACTTTCAGTTACATAGTTCTTGATCAACTTTTTGTTGCACTGACTGCCTTATGAAAGTACAACCAAATATCATTCTTCAGTTTCCCTTGTGTTCTTACTTTGTGGTACCAAAATTACTGCAAAGGATGACTTGTCAGTATTGAAGTGCCCGGGCAGGTGTGTGATGACTAATGTATATACTTTTacagaattattttttaatttattatattttaaaatgtatcataATAAAGATGAATGTTAATGGGGTACGATTTTTACTTCATGCATTCACAGAGTTGCCTGTGCGTCTCACACTTACTGTACAATTTAACATTCCACACATTTGTTGTATCAGCTCTGCTATGCAAGAACCCTTACTTTGAAAGAGCCTATGTCCATATTCAACACGGTGGCCAGGCTGTATTAAATTTTATTAGGAGAACATTGAATGA

Function

GO: NA

KEGG:

id description
K02154 ATPeV0A, ATP6N; V-type H+-transporting ATPase subunit a

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639511.1 lncRNA upstream 103202 19151533 ~ 19153584 (+) True LOC120560789
TU84161 lncRNA upstream 169924 19084934 ~ 19086862 (+) True G62836
TU84159 lncRNA upstream 169924 19085914 ~ 19086862 (+) False G62836
TU84163 lncRNA upstream 175132 19081080 ~ 19081654 (+) False tmem119a
TU84099 lncRNA upstream 274163 18966083 ~ 18982623 (+) True G62796
TU84387 lncRNA downstream 280382 19549410 ~ 19554906 (+) True G63005
TU84391 lncRNA downstream 286355 19555383 ~ 19562350 (+) True G63007
TU84393 lncRNA downstream 286355 19555383 ~ 19562350 (+) False G63007
TU84401 lncRNA downstream 306533 19575561 ~ 19581840 (+) False G63015
TU84402 lncRNA downstream 306533 19575561 ~ 19633642 (+) True G63015
XM_039802029.1 mRNA upstream 858 19251176 ~ 19255928 (+) True tctn2
XM_039802722.1 mRNA upstream 29861 19207779 ~ 19226925 (+) True limk2
XM_039804624.1 mRNA upstream 134311 19120145 ~ 19122475 (+) True cmklr1
XM_039803828.1 mRNA upstream 157182 19087797 ~ 19099604 (+) True sart3
XM_039803826.1 mRNA upstream 175186 19076561 ~ 19081600 (+) True tmem119a
XM_039803343.1 mRNA downstream 508 19269536 ~ 19296674 (+) True dnah10
XM_039802286.1 mRNA downstream 29527 19298555 ~ 19357146 (+) False emid1
XM_039802285.1 mRNA downstream 29528 19298556 ~ 19357146 (+) True emid1
XM_039802287.1 mRNA downstream 29528 19298556 ~ 19357146 (+) False emid1
XM_039802293.1 mRNA downstream 94978 19364006 ~ 19372609 (+) False ewsr1b
XR_005639481.1 other upstream 575625 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 837196 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 840780 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 925556 18330705 ~ 18331230 (+) True G62513
XR_005639579.1 other upstream 1247468 17998686 ~ 18009318 (+) False cmya5
TU84360 other downstream 165879 19434907 ~ 19448950 (+) False rasl10a
XR_005639482.1 other downstream 1208784 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 1208784 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 1407389 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 2319848 21588876 ~ 21598799 (+) False LOC120560787

Expression Profile