RNA id: XM_039803352.1


Basic Information

Item Value
RNA id XM_039803352.1
length 3540
RNA type mRNA
GC content 0.52
exon number 18
gene id grid2
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 22123035 ~ 22754750 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGGCTTGCCCCAGGTGTGTTTTGGCATCTCGTAGTAGCTAATTTCATCTTCTTGCCACAAACGTCAGGACTTTGGGAACAACTTTGAAAGGCTAACGTTATCGCACTTTTACCTTCAGACCAATTGAACCATTTAGCAGCGTGATTCAAATGAAGCAACAGGTGACGTTAAGAGTTAGTACGTTTTCTAGCTACCATGTTTTGTGAAGCTAACTAACTTTACTTCGCCACGCCAGCAGCAACATCATAAGGTGCATTTAAGGAAAGTATGTTAAATCCAACTGCAGCTAGCATTTATTTGGAGGCCTAACGTACCATTACTTCAAAATTGGACCAACGTTACCCGGGTAGAAAAAGAGGACTATATGGACAGGATTGAGTTGAGTTGGACGACTAGCCTAAATACAAGCGGAGTCTTCTGTGCTAAAGATCCTCAAGTCCGGCGGGAAACTGGGCACTTTATTGCCACCATGAAAGACCCTCCCATACCGATCACTGGCCAAACAAGTGATGTTCCCCTTCAACGTGCCATCTTTGATGAGTCAGCACGGAAAGATGATGAGGTGTTTCGCCTTGCTGTGGCAGATCTCAATTTGAACAACGAGATCTTGGAGACCGAGAAGATCACCATCTCTGTGGAATTCGTTGATGGGAACAACCCCTTCCAGGCTGTGCAAGAAGCCTGTGAGCTGATGAACCGTGGTATCCTGGCTCTGGTCAGTTCAATCGGCTGCATGTCTGCGGGCAGCCTTCAGACTCTGGCCGATGCCATGCACATCCCCCACCTCTTTATCCAGCGCTCCCCAGCGGGATCACCTCGCTCCGCCTGCCCGCCAACCGGTCGCATCCCTGGAACAGATGACTACACCCTAATGGTCCGCCCACCCGTCTATCTCAATGAGGTCATCATGCAAGTGGTGTCTGAGTACAGCTGGCAGAAGTTCATCATCTTCTATGATTCTGACTTTGATATTCGTGGTATTGAGGATTTCCTGGACCGGACCTCTCAGCAGGGAATGGACGTATCCCTTCAGAAGGTGGAATCTAATATCAACATGATGATCACAAGTCTGTTCAGAACAATGCGTGTGGAAGAGCTGCATCGCTACAGGGATACACTACGCAGGGCCGTGCTGTTCATGAGCCCAGCTACTGCAAAGGCTTTTATCACTGAGGTGGTGGAGACCAACCTGGTGGCCTTCGATTGTCACTGGATCCTGATTAATGAGGAGATCTCAGACTATGACTTGCAGGAGTTAGTCATGAAGTCGATCGGTCGGCTGACGTTGGTGCGCCAGACGTTCCCTATGCCCCAGAACACAACTCAGCGCTGTGTCAAACACAACCACAGGATTAACACTTCGCTATGTGACCCTAAAAATCCCAAGTCTCACCAGCTAGAGATTACCAACCGCTACATCTATGATACGGTGTTGCTGCTGGCCAACACCTTCCATAGAAAGCTGGAGGATAGGAAGTGGCACAGCATGGCCAGTCTGAGCTGCATCAGGAAGAACTCCAAACCGTGGCAGGGAGGCAAGAGCATGCTGGATACTGTCAAAAAGTTTGGAGTGAGCGGACTCACCAGTTTCCTGGAGTTCACTGACAATGGCTCGAACCCCAACATCTTCTTTGAAATCCTGGGAACAAATTACGGAGAAGACAGGGGACGAGGAATCAGTAGGCTGGCAACGTGGGACCCAGTTCATGGCTTGAATGGCACTCTGACAGACAGGAAATTGGAAAATAACATGAGAGGAGTGGTGTTACGAGTCGTCACTGTTCTGGAGGAGCCGTTTGTAATGGTGTCAGAGAATGTTCTAGGAAAACCAAAGAAGTACCAGGGCTTTTCTATTGACGTCCTGGATGCTCTGTCCAACTACCTGGGCTTTAAGTACGAGATCTACGTCGCTCCAGACCACAAGTACGGCAGCTTGCATCCTGACGGTCAGTGGAATGGAATGATGGGCGAATTGGTCTTTAAGCGAGCCGATGTGGGACTTTCAGCCCTGACCATCACGCCTGAGCGAGAGAGCGTTGTGGACTTCACCACGCGCTACATGGATTATTCAGTGGGTGTTTTGCTGCGCAAGGCAGAACGCACTGTGGACATGTTTGCCTGCCTTGCACCCTTCGACCTGTCACTGTGGGCGTGCATTGCGGGCACCGTGCTCCTCGTTGGCATCCTGGTGTACTTGCTCAACTGGCTCAACCCACCCCGGCTACCCATGGGATCTGTGTCCCCGACAACACTGTACAATTCCATGTGGTTCGTGTATGGCTCCTTTGTACAACAAGGTGGAGAGGTGCCCTACACCACTCTAGCTACGAGGATGATGATGGGCATTTGGTGGATGTTTGCTCTTATTGTCATCTCCTCGTATACCGCCAACCTAGCAGCCTTCCTCACCATCTCACGCATAGAGAACTCCATACAGTCTCTCCAGGACTTATCAAAGCAGACAGAGTTGCCTTATGGTACAGTGTTGGACTCCGCAGTATACGATCAGGTGCGCTCCAAGTCTATGAACCCCTTTGAGAGAGATCCCATGTACTCCCAGATGTGGCGGATGATTAACCGCACCGGAGGAGGAGATAATAACGTTGAGGAGTCAAAGGAAGGCATTCGCAAGgtgAAGTACGGTCGGTTTGGCTTTGTGTGGGATGCAGCCGTGCTGGAGTACGTTGCTAATAATGACGAGGACTGTTCGTTCTACACCGTCAGCAGCACCGCACCAGACCGTGGATATGGTATCGCCATGCAGCACGGCAGCCCCTACAGGGACATTTTCTCCCAGAGAATCTTGGAGCTCCAGCAGAATGGTGACATGGATATACTGAAAGTCAAGTGGTGGCCCAAGGACAGCCCCTGCGACCTCTACAGCTCAGTCCAAACACGACAGCGCGGCAGCGCCCTGGACATCCACAGCTTTGCCGGCGTTTTCTGCGTCCTGGCAGCCGGCGTGGTGCTCTCCTGCCTCATTGCCATGGTGGAAAGCTGGTGGTCACGGAGGAAGGGATCCAGGGTCCCCTCCAAGGAGaCGCAGGCAGATGGCCCATCTGTCAGACAAGCTGCTGATCCTTGCCCTCACAGCCCCAACGAGCACCCTCTGACCCTGGGTGGTCAGAACCAGAACCCCAACACCACTGCCCCCACCGCCACCCATTACCAGCCCCCAGCATGCTGCGACATTCCCTGTGCCCTGATCGTGCAGCACTCCTATGAACCCAGCAACCCCTCCGAGCTCACCCCCAAAATGAGAATGACCACCTTTACCACCTCACCTCCCACCCCAAGGACGATAAGGAGATCGACCTGGAGCACCTACACCGCCGGGTTAACAGCTTGTGCACCGAGGATGAAAGCCCCCACAAGCAGTTCTCCACCTCTTCCGTCGATTTAACACCCCTTGACATGGATGCGCTGCCTGCCGCACGCCAGGCCCTCGAGCAGATCAGCGATTTCCGCAACACCcacatcaccaccaccaccttcaTCCCCGAGCAGATCCAGACCCTTAGCCGCAGCCTCTCTGCCAA

Function

GO:

id name namespace
GO:0035235 ionotropic glutamate receptor signaling pathway biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005234 extracellularly glutamate-gated ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85374 lncRNA upstream 247348 21875445 ~ 21875687 (+) True G63715
TU85373 lncRNA upstream 277897 21844832 ~ 21845138 (+) True G63714
XR_005639467.1 lncRNA upstream 502324 21608823 ~ 21620711 (+) True LOC120560273
TU85279 lncRNA upstream 504433 21616223 ~ 21618602 (+) True G63641
TU85261 lncRNA upstream 635997 21486769 ~ 21487038 (+) True G63628
TU85584 lncRNA downstream 152239 22904035 ~ 22905966 (+) True G63872
TU85631 lncRNA downstream 235385 22987181 ~ 22988040 (+) True G63914
XR_005639470.1 lncRNA downstream 468054 23219850 ~ 23245368 (+) True LOC120560300
TU85721 lncRNA downstream 523124 23274920 ~ 23281109 (+) True G63976
TU85782 lncRNA downstream 678894 23430690 ~ 23432473 (+) True G64026
XM_039802935.1 mRNA upstream 1720 21991354 ~ 22121315 (+) True ccser1
XM_039802296.1 mRNA downstream 6315 22758111 ~ 22760837 (+) True atoh1a
XM_039803609.1 mRNA downstream 39742 22791538 ~ 22811392 (+) True smarcad1a
XM_039804277.1 mRNA downstream 74830 22826626 ~ 22835070 (+) True tspan36
XM_039804108.1 mRNA downstream 88706 22840502 ~ 22861873 (+) True mapk4
XM_039804109.1 mRNA downstream 88706 22840502 ~ 22861873 (+) False mapk4
XR_005639510.1 other upstream 524236 21588876 ~ 21598799 (+) False LOC120560787
TU85087 other upstream 1445119 20676417 ~ 20677916 (+) True G63480
XR_005639482.1 other upstream 1634197 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other upstream 1634197 20477812 ~ 20488838 (+) False wdr31
TU84360 other upstream 2674085 19434907 ~ 19448950 (+) False rasl10a
TU85622 other downstream 178103 22929899 ~ 22930205 (+) True G63905
TU85875 other downstream 940866 23692662 ~ 23693291 (+) True G64108
XR_005639471.1 other downstream 2071922 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 2071923 24823719 ~ 24834620 (+) False cdc14b
TU86491 other downstream 2933176 25684972 ~ 25696570 (+) False LOC120561182

Expression Profile