RNA id: XM_039803364.1


Basic Information

Item Value
RNA id XM_039803364.1
length 5125
RNA type mRNA
GC content 0.55
exon number 27
gene id gapvd1
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 381172 ~ 432629 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGTGAAGCCAGACATCCACACTCTGGCCCACCACCTGAAGCAGGAGCGGCTGTATGTGGCATCAGAGAAGCAGCTGATCCAGAGGCTCAACAGCGATGTGCTGAAGACAGCCGAGAGGCTGTACCGGGCCGCCTGGATCGCCAAGCAGCAGAGGATCAACCTCGACCGTCTTATTCTCACCAGTGCGGAGGCCTCTCCGGCTGAATGCTGCCAACATGCCAAAATGCTGGAAGACACACAGTTTGTCGATGGCTACAAGACTCTGGGCTTCCAGGAGACGATCTATGGCGAGTTCTTGGCCAGGTTATGGGAGAACCCCAGACTGGTGGCTTCCTGTCTGGTGGCAGGAGAGAGGCTGAACCAGGAGAACACCCAGGCGGTCACACATACCGTCTTCACCGCACTTTATGGCAACTGTATTATGCAGGAGGATGAAAGCTACCTGCTACAGGTGCTGCGGTACCTGGTGGAGTTTGAGCTGAAGGAGAGTGACAACCCTCGGCGCCTACTGCGACGGGGGACCTGCGCCTTCAGCATCCTTTTCAAGCTCTTCACCGAGGGCCTATACTCGGCCAAGCTCTTCCTCACCGCCACCCTCCACGAGCCCATTATGCAGCTGCTGGTGGAAGACGAAGACCACCTGGAGACGGACCCTGCCAAGGTGACAGAGCGCCTCACTCCGGCCCAGCAGGAACGCTTCGGAGAGAAGGGCTCCGAGGGCTACAAGCAAAGGGTGCAGGCCGCCGTGGAGGCCAACGAAGCCAAGCTGGTCGCTCTGGTCAACAAGTTCATCGGCTACCTGAAGCAGAACACCTACTGTTTCCCTCACAGTCTGCGCTGGATCGTGTCGCAGATGTACAAGACTTTGTCGTGCGTGGAGCGTCTCGAGGTGGGCGAGGTACGCACCATGTGTACAGACCTGCTGCTCACCTGCTTCATCTGCCCAGCCATAGTCAACCCCGAGCAGTATGGTATCATCTCAGATGCACCCATCAACGAAGTAGCCCGCTTCAATCTAATGCAGGTTGGGCAGCTTTTGCAGCAGTTGGCCATGGCCGATGATGATGCAGACCCAAGGCGGAAAAGCAGTTTGTCCAAATTtgataagAGTTGTGTAGCCGCCTTTCTGGATGTGGTGCTTGGGGGAAGAGCAGTCGAGACCCCACCCATGTCCTCAATGAACCTTCTAGAAGGCCTCAGTAGGACTGCGGTCTATATTACACATAATCAGCTGCTCATGCTGGTGGACTTTGTGCGGAATGTGATGGCAGGGGACCACCTTCGCGAGGAGGAGCACATGGCTCTGGAGACCCTGCTTGCCAACGTGCCCCAGTCTCGAACTGTGAAGAGCAACAGTCTGGAGCTCACCCCCTCCAACACCCCCCAGCTCTCCCCAGCCACCACTCCTGCCAACAAGAAGAACAGGCTCCCCATAGCGGCTCGAAGCCGCAGCCGTACCAACATCGCCCAGGAGGGGGAGGCAGAGGCCAGCTCCCAGGAGTCCCTGCAGGAGCTGATGCCAGAGGAGGTGCTGGTGATTTCACTAGGAACTGGTCCTCAGTCTGTCCCTGGGATGATGTCAGAGAATGAGGTTTTGAACCTGCAGATGGCTGATGGGGCCCAGGGGGACGGCCATGCTGATGATACTAAGCTGCACGGTAAACCTGACAAAACCCTGCGCTTCTCCCTCTGCAGTGACAACTTGGAAGGCATCTCAGAGGgTCCATCCAATCGTTCTAACTCTGTGTCTTCTCTGGACCTGGAGGGAGAGTCTGTCTCGGAGCTGGGAGCCGGACCGTCGGGGAGCAATGGGGTGGAGGCTCTGCAGCTTCTGGAGCATgaacaggCCACCACTCAGGACAACCTGGACGACAAACTGCGCAAGTTTGAGATCCGAGACATGATGGGTCTGACAGATGACCGGGACATCTCCGAGACGGTCAGCGAAACCTGGAGCACCGATGTGCTCGGCAGTGACTTTGACCCCAACATGGATGAAGACCGGCTGCAGGAAATAGCAGGGGCAGCTGCGGAGAACATGCTCGGCAGCCTGCTGTGTCTCCCTGGCTCGGGTTCAGTGCTGCTGGACCCCTACGGCTCCACCATCTCGGAGACCACAAGCGAGGCGTGGAGCGTGGAGGTCCTCCCCAGTGACTCAGAAGCCCCAGACCTGAAACAGGAGGAGCGCCTGCAGGAGCTGGAGAGCTGCTCCGGCGTTGGCAGTACGTCCGATGACACAGAGGTCCGAGAGGTCAGCTCCAGACCCAGCACACCCGGCCTCAGTGTTGTCTCAGGCATCAGTGCAACCTCAGAAGACATCCCCAACAAGATCGAGGACCTGCGGTCAGAGTGCAGCTCAGACTTTGGAGGGAAGGACTCTGTGACCAGTCCAGATGGGGATGAGTCAGGCCACGGAGCACATCATCCGACATCTCCGCCCTCACAGGCCGATTCCTTGCTGGCCATGTTCGATCCCCTCTCCTCCGCCGAAGGCTCCACTGGAACAATAGTGAGGCCCAAAGTGCACTACGCCAGGCCCCCTCACCCTCCCCCCGATCCTCCCATCCCTGAAGCCAGCGCCCTGGGGCCGGAGACGCGCTACTCTCTCTTCACGCCCCACTGCCTGGCCCAGGCCGAGCTGGAGCATACCAAGCAGCGCCACTCCTTCCCCGACAGGCTGGTCCGGAGTCGCAGCTCCGACATCGTGTGCCCAGGCCGCCGGCCCACTAGTGACCCCGGCCTCAACCGGCGGGTCGCGGTGGAAGAGCGCGACCCTGCCGGGGCCTTCGCCTTAGGACCGTCCTCGTCCCCCAGCAAGGACTCCCTCAAAGGAGAGGTTGAGGACAGGAAAGACAGTGACGACGAGAAGTCTGATCGCAACAGGCCATGGTGGAAGAAACGTTTTGTGTCAGCCATTCCAAAAGTGCTGTATTGGACGGCTGAGAGTGATGTCCCAGCGCCCATAGCTGCGTTTCGGAAAAGGGACAAGCAGGAGAAAGACGACGTTGTCCCGGAGCGTGTCCCCCAAGATGACCCGTTGCCCAGACAGAGCTCTCACGCGCAGGCAGCTGAAGACATCCTGGACAAGTACAGGAACATCAAGAGGACGAGCCCGAGTGATGGAGCCACAGGCGGAGCTTCTTACGATGGTACAGGAGATCTTTGTGTTGAAGACAGCGTGCACGACTCTCCTAGAGAAGACGCTCTGCAGAACATATCTGCAGACGACCTCCCAGACTCAGCCAGCCAGACGGCACAGCAGCATGACTGCAAGTTCTCTTTCAGtGATGCAAAGAAGAAGTTGAGGTTGGCATTGTGTTCTGCAGACTCAGTGGCTCTGCCCATCATGGTTCCTGCAACCACGCGAAACGGGCTACCTGACCACATGGACTCTGAAGAAAATTTGATCGTCTGCTTCCTGAAGATCCAGCTAGCAGAGGCCATCAACCTGCAGGACAAGAACCAGATGGCCCAGATCCAGGAGACCACGCGCTGCGTCGGCCGCTTCGACCCACGCACCTGCAGGAAGCTGCTGGCTGCCATCGCTGAGGATTACCGAAAGCGAGCGCCGTACATAGCTTATCTAACCCGGTGTCGCCAGGGCCTGCAGACGTCCCAGGCCCACCTGGAGAGGCTTCTCCAGAGGGTGCTCCGAGACAAGGAGGTGGCCAACCGCTACTTCACCACCGTTTGTGTCCGCCTCCTTCTGGAACACATGGAGGCCAAGATGCTGGACTTCATTAAAGCGTTCCAGGGGTGCACAGCATCGGATGACAAGACGGCAGCCGTGGAGGATTTTCTGCGCTACTTGTACGGCGCCATGGCCCGTGATGCCATTTGGCAGTACGCTAGCGAGGACCAGCTGCAGGACGCCCAGATGGCTATCGAGCGCAGCGTCATGAACCGCATCTTCAAACTGGCCTTCTACCCCAACCAGGATGGAGATATTCTCCGAGACCAGCTTTTCCATGAACATATCCAGCGGCTCACAAAAGTTGTAACGGCCAATCATAAAGCTCTTCAAATCCCAGAGGTGTACCTGAAGGAGGCTCCGTGGCCCTCTGCGCAGTCCGAGATCAGGACCATCAATGCGTACAAGACGCCGCGAGACAAAGTCCAGTGTATACTGCGCATGTGCTCCACCATCATGAACCTCCTCAGTCTGGCCAACGAGGACTCCGTCCCTGGAGCGGATGACTTTGTCCCTGTACTTGTCTTTGTCCTCATAAGGgCAAACCCGCCCTGCCTGCTGTCCACCGTTCAGTACATCAATAATTTCTACGCCAGCCGGCTGAGTGGGGAGGAGTGCTATTGGTGGATGCAGTTCACCGCGGCGGTGGAATTCATTAAGACCATCGACGATCGCAAGTGAAGCAGAACAGCCACCTGTATGGGCAGACTGCGGGGGAAGGAGCCGGGAGACTGGGAGACTTCCCAACCAACTGCTCCCTCTGCACAGCTTAGAAAGCCTGGCCCTCAGCCTGCTCTGTATTTGTATAGCTTGTACATAGCCAGAGACGTTGAAagagtacaaaaaaaatatatatattactgtatgtatgtggacAAATCCAGGTTTGAGCCGcgctgaaaaacaaacaaaacagccttgggttaaaaaaaaaaaaattggcaaGATGTTAAGTCTGAAAcctgatttagatttttttttttttttttgtctctttaatCACGTTTGGGGTCCGTATTAGgaattttatatatacacaaacaccaATATGACATTAAATCAACCTAAAAGATAATCCTGTATAAAGGGACCAGACTTCCTTGATGTGATCAATGATCTTTATATCCCCCCCCCATGCTGAGTGAGAGGGAAGGGCTTCCAATTAAATTACAATATAAATGTTCATTAAATGCATTGTAACGTGGGGATACACAGTGTGTGGTAGTTACTGATTAGATTTAGTGGCTCATTCACACGGAGATCAATTCCATACTACTCATAAGGTAAGCATATCAAAGCAAGTAGGGCAGCTTTTTTTCATGGATTGTTTACATCATCTTTATTCCCAACAAGCAAGTGTGTCAGCGACAATTTGGACATAAGGGCCCACATAtttatatgaaataaaaatgtatttatttctgtagtTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78020 lncRNA upstream 134396 257568 ~ 259697 (+) True G58024
TU78015 lncRNA upstream 142021 245891 ~ 252072 (+) True G58021
XR_005639514.1 lncRNA upstream 181710 210756 ~ 212383 (+) False LOC120560799
XR_005639515.1 lncRNA upstream 181710 210756 ~ 212383 (+) False LOC120560799
TU77996 lncRNA upstream 183417 209281 ~ 210676 (+) True G58011
TU78074 lncRNA downstream 109261 541890 ~ 572532 (+) True G58057
TU78181 lncRNA downstream 403950 836579 ~ 837861 (+) False lmx1bb
TU78179 lncRNA downstream 446625 879254 ~ 882251 (+) True G58151
TU78184 lncRNA downstream 459468 892097 ~ 892439 (+) True G58156
TU78185 lncRNA downstream 466264 898893 ~ 899506 (+) True G58157
XM_039804336.1 mRNA upstream 17178 367381 ~ 376915 (+) True unm_hu7912
XM_039803834.1 mRNA upstream 37740 340977 ~ 356353 (+) False syn1
XM_039804219.1 mRNA downstream 100184 532813 ~ 593805 (+) True pbx3b
XM_039804227.1 mRNA downstream 100184 532813 ~ 593805 (+) False pbx3b
XM_039804221.1 mRNA downstream 100184 532813 ~ 593805 (+) False pbx3b
XM_039804220.1 mRNA downstream 100184 532813 ~ 593805 (+) False pbx3b
XM_039804223.1 mRNA downstream 100184 532813 ~ 593805 (+) False pbx3b
TU78000 other upstream 181723 210742 ~ 212370 (+) True LOC120560799
TU78941 other downstream 2445772 2878401 ~ 2879744 (+) False lman2lb
TU79382 other downstream 3684650 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 3991512 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 3999542 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 4000039 4432668 ~ 4432739 (+) True trnaq-uug_2