RNA id: XM_039803366.1


Basic Information

Item Value
RNA id XM_039803366.1
length 2274
RNA type mRNA
GC content 0.46
exon number 13
gene id LOC120560655
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 21930173 ~ 21936780 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttgtttacagaGTTCACTTAGCTAAACATGGCCACCCTAGCAACCTCACGATGCGCTGATAAACATTGCCCGGTAGCTATCATAGAGTTATTCACTGCATGTGTTGTAAAATTGACATGTATTAGTTAGCTAGTCGACAACATTTTAATTCTTTCAAATGTTTAACATTTTCAGGGAAAGCGGACATATGGCGTTTCGTTACTGTTGAACGACTGACGAGCTAGCGGTCGTTAACAAATACTAGCCGATGTTGCATactttagctaacgttactgacaTAACGTTACTGAAATCCGGTGTACACTCGTCATTAATTAGTGTAATAATGTTGCAGTGTTTGTCTCATATGGTTTGTCTGGTGTTTTGTAAGAGATATGTCGtccctgctagctagctagctgtccgAAAATGAATATGTTGGTTTGGTTAACATGATGCTGTGGTTCCAGATTGACGAGGCACCAGTATTACATTATCGACATCGATGACGTTGACGTTAAGGAAGCTCCATCCAAAATGGATTATATGTATAAATGCACTTGTTGTTATATATTGCACTATGATCAGCTGTTGTGTTTTCCTTTCACTAAATGCATTtgagcagggagagagagactccAGCAGTGTCCAGCAGCAGCTCTGCACATCACCCCTTGTCAGCAGTGACAGCGTGGATCAGAGGCTAGCCAGGCAGAAAGCTGCTCAGTTTCTCAGGGAAGCCGAGAAAAACAGGAGGCAGATTGAAAAGTTGGAGAAAGAGAGGACGCTGACTGCTCAGTGCAGAAAGAATGGCTGGACAGATGTGCCTGGAGAACTGGAAGAGTACGAGAAAGTGCTGGAGGAAGAAAGACATGCTGAGAagaCGAATCTTCAAAAGCAGCTAGTGAAGATTCATAATGGTGTGAGGAAATTTCAGAGACAGCTAATAGATGTGAAGCCAACTCCTGAGTTGATTGAAAGACTGAAGGAAATAATGTCAGAGGTGGAAATCTCAATTAACACCCTAAAGGAGGAACAGCGTTCATGCTTTGAGGAACTTTTGAAGGAGGAGAGGACATGCAGACAGGAGATCGCTGCGTATGAGAAGAAGATTGAAAACTTGAGCCTTGCTGTCAAATCCCACCCCAAACTACCCACAGCTCCCACTGTTAAGacCAAACCCCTGGACAGAGACCTCCCTGCAGAGGTCAGAGCACTGGAGGCTTTCCTGCTGAAGACAGGAGGCCCTTCTGGTGGCTGGGACCAATATGACCACCAAGCCTTCCTTAAAGTCTGGACAAAGCACAGTGGACAACCAGCCTACAGGAAAGAGGTCAAACTGTACCTGCCTAGTAAAACATTGGAAGAGATAGAGCAACATGAGGACTGGCATCAGGAGCTGATCTACCtacaggacagaaagagagagGCTATTCAGCGGTGGAAAGCCAGCAAGCATCAGGAACGCCAGACCAGAATACAGAGTCAGGAGGAAGTGGAGGAGGCAGGGATTAGGGAGAAGGAGGCCAAGAGCCAGGTCCACCAACACAGGACTGAGGATGAGAGGAGGGAGGCGGCACAGCGACTGGAGGAGTGGAAGGAAGAGAAAAGAAGGAAggagaaacaggaagaggagcagaggcTGGCTGAGGAGGTACAAAAGAGGAGACGGGCAAAGGAAGAGCGTCGCCGGCAGCTGGAAGTGAAGCTGACCGTTGAGGAGCAGCTACgactgaagagagaggaggaggaggaacaggggaggaggaggagagaggaggaacagAGGGAGATGGACGAGAGGAGAAGGGAGGCAGTAAAGGGCATCAAACGCTTTACTGAAAGGGATCTTCAAAAGGTGGAGGCAAAGCTTCAGGAGAAACAGCTCagggaaaaagaggaagaggaaagacaGAGGAGAATCACTGCTAAGTTGAAGGAGAAGGTGGATAGTCACATCAGCAGAGACCCCTCCAGGCTCACCCGTCCCACTAAGGGTTGGGAGGAGCGAATGAAACACATTGGACCTTCAGGAGGAGGGCCTGTGCTACAGATGTTTCACAGAGCTGTTCCCACTTGGAGACAAGGCCTGTGATGTGCAACAAAGGAAGTTAACTGAAATGCATtcagaatgttttttgtttttatagaaaTTATATTATATGAAAAAGTATGCAATGGGACCTCAACACCAGATTGTGCCTTTCCTTGAATCTACTGTTAGCTGCTGTTTGCTATAACTTACTTTAACTTTTACAAAaccattatttaaaataaaagcttgtGTAAACTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85374 lncRNA upstream 54518 21875445 ~ 21875687 (+) True G63715
TU85373 lncRNA upstream 85067 21844832 ~ 21845138 (+) True G63714
XR_005639467.1 lncRNA upstream 309494 21608823 ~ 21620711 (+) True LOC120560273
TU85279 lncRNA upstream 311603 21616223 ~ 21618602 (+) True G63641
TU85261 lncRNA upstream 443167 21486769 ~ 21487038 (+) True G63628
TU85491 lncRNA downstream 195104 22131884 ~ 22150124 (+) True G63792
TU85584 lncRNA downstream 967255 22904035 ~ 22905966 (+) True G63872
TU85631 lncRNA downstream 1050401 22987181 ~ 22988040 (+) True G63914
XR_005639470.1 lncRNA downstream 1283070 23219850 ~ 23245368 (+) True LOC120560300
TU85721 lncRNA downstream 1338140 23274920 ~ 23281109 (+) True G63976
XM_039803346.1 mRNA upstream 12326 21908636 ~ 21917879 (+) True fem1c
XM_039804009.1 mRNA upstream 23378 21903212 ~ 21906827 (+) True tmed7
XM_039803170.1 mRNA upstream 38066 21880130 ~ 21892139 (+) False LOC120560549
XM_039803369.1 mRNA downstream 220 21937000 ~ 21951913 (+) True pggt1b
XM_039803375.1 mRNA downstream 18798 21955578 ~ 21989582 (+) True trim36
XM_039803376.1 mRNA downstream 18798 21955578 ~ 21989582 (+) False trim36
XM_039803378.1 mRNA downstream 18799 21955579 ~ 21989582 (+) False trim36
XM_039803379.1 mRNA downstream 18799 21955579 ~ 21989582 (+) False trim36
XR_005639510.1 other upstream 331406 21588876 ~ 21598799 (+) False LOC120560787
TU85087 other upstream 1252289 20676417 ~ 20677916 (+) True G63480
XR_005639482.1 other upstream 1441367 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other upstream 1441367 20477812 ~ 20488838 (+) False wdr31
TU84360 other upstream 2481255 19434907 ~ 19448950 (+) False rasl10a
TU85622 other downstream 993119 22929899 ~ 22930205 (+) True G63905
TU85875 other downstream 1755882 23692662 ~ 23693291 (+) True G64108
XR_005639471.1 other downstream 2886938 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 2886939 24823719 ~ 24834620 (+) False cdc14b
TU86491 other downstream 3748192 25684972 ~ 25696570 (+) False LOC120561182

Expression Profile