RNA id: XM_039803371.1


Basic Information

Item Value
RNA id XM_039803371.1
length 3867
RNA type mRNA
GC content 0.57
exon number 27
gene id LOC120560659
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14212239 ~ 14233388 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGGAAAGGAGGAGCAGCTTTTATTGTCGCCAGAGAGCTGCTGTAATGGCGGTGTCTCGTCGTTCctcgcagcagcagcaacaacaaagtACATTACAGTCTCCGCCAAGAAACGGCTCTATTTCGGGAGCTCCTCCGGGGTCTCCGCCGATGGCTCTACTGACGGCGGCCGTTGCACCCCCGGAGAATGAGAGGGAATGCAGCGGAGGGATTGAGATGGTTCTGGCCTCCACAGACCTACCCACCCCGGTCTTAACGAGCAGCGCAAGCTTCACCACGACCACCTCtggcggcggcagcagcagcgtcTCAAGCCCCGGTTCTGGAGCTGCCAGTCCCATTGACGGTAGCAGTGGCATCGGCGGGGCGTTCAGGGAGCTGTTCGAGGCCTGCCGTAACGGAGATGTATCCAGAGTAAAGAGACTTGTCGATTCGGTGAATGTAAACGCAAAGGACATGGCTGGTCGAAAATCGACTCCCCTTCACTTCGCTGCGGGATTTGGCAGAAAAGATGTGGTGGAGCACCTCTTGCAGACCGGGGCCAATGTTCATGCCAGGGATGATGGAGGACTTATCCCCCTGCATAATGCCTGCTCTTTCGGCCATGCAGAAGTTGTCAGCCTCCTCTTGTGTCAGGGCGCAGATCCCAACGCCAGAGATAACTGGAACTACACGCCGTTACATGAGGCTGCCATCAAGGGAAAGATAGATGTTTGCATTGTGTTACTCCAACATGGAGCTGATCCAAACATCCGCAACACTGATGGAAAATCTGCTTTGGATCTAGCCGACCCTTCAGCCAAGGCTGTTCTCACTGGTGAATACAAGAAGGATGAACTTCTGGAAGCAGCAAGGAGTGGAAATGAAGAAaagctgatggcactgctgaCTCCATTAAATGTCAACTGCCATGCCAGCGATGGTCGCAAGTCGACGCCGCTCCACCTGGCCGCCGGCTACAACCGGGTCCGCATCGTCCAGCTCCTTCTCCAGCACGGAGCCGATGTTCACGCCAAGGACAAAGGTGGCCTGGTTCCACTTCACAACGCCTGCTCCTACGGCCACTTTGAGGTCACCGAGCTTCTGCTTAAACATGGAGCCTGCGTGAACGCCATGGACCTGTGGCAGTTCACTCCTCTCCACGAGGCCGCGTCCAAGAATCGAGTGGAGGTCTGTTCCTTGCTGCTGAGCCACGGGGCCGACCCCACCCTGCTCAACTGTCACAGCAAGAGCGCCGTGGACATGGCCCCCACTCCAGAGCTCAAAGAAAGGCTCACCTACGAGTTCAAAGGTCACTCGCTGCTGCAGGCGGCCCGGGAGGCGGACATGGCGAAAGTGAAGAAGACGCTGGCTCTGGAGATCATCGGCTTCAAACATCCTCAGACCAACGAGACTGCTCTGCACTGTGCTGTGGCTTCCCCCCACCCCAAGAGGAAGCAGGTGACTGAGCTGTTGCTGCGTAAAGGTGCCAACATCAATGAGAAGAACAAAGACTTTATGACCGCGTTGCATGTTGCTGCCGAGAGAGCTCACAACGATATCCTGGAGGTGCTGCAGAAACACGGAGCAAAGGTGAACGCTGTGGACACACTAGGTCAGACCGCTCTTCATAGAGCCGCGCTGGCCGGGCACATCCAGACCTGCAAGCTGCTGCTGAGCTACGGGGCCGACCCGTCCATCGTGTCTCTGCAGGGTTTCACCGCTGTTCAGATGGGCAACGAGGCTGTTCAACAAATTCTTAACGaaaatgtcCCAACACGTAATTCTGATGTGGACTACAGATTTCTGGAGGCAGCCAAAGCAGGGGATCTGGAAACCGTGCAACAACTTTGCACCCCCCAGAATGTAAACTGCCGGGACTTGGAGGGCCGCCACTCTACTCCTCTCCACTTTGCAGCTGGTTACAACCGAGTGGCTGTCGTTGAATACCTGCTACACCATGGAGCTGATGTCCATGCCAAAGACAAAGGTGGTCTGGTTCCCCTCCACAACGCATGCTCCTATGGTCACTATGAAGTAGCCGAGCTGCTGGTCAGACACGGAGCTTCAGTCAATGTGGCCGACCTGTGGAAATTCACCCCGCTTCACGAGGCTGCAGCCAAAGGAAAATATGAGATCTGCAAACTGCTGCTCAAACACGGAGCCGACCCATCCAAGAAGAACCGTGACGGCAACATGCCGCTGGACATGGTGAAAGACGGAGACACGGACATCCAGGACCTGCTGAGGGGGGACGCAGCGCTGCTGGACGCTGCCAAGAAGGGCTGCCTGGCCCGCGTCCAGAAGCTCTGCTCCCCAGAGAATATCaactgcagagacacacaggggCGCAACTCCACACCACTCCACCTCGCAGCTGGGTACAACAACCTGGAGGTGGCGGAGTATCTGCTGGAGCATGGGGCTGATGTCAACGCCCAGGACAAAGGAGGCCTTATCCCTCTCCATAATGCTGCTTCTTATGGGCATGTGGACATCGCAGCCCTACTGATCAAGTTCAATACGTGTGTGAATGCGACAGACAAATGGGCTTTCACACCCCTGCATGAGGCGGCCCAAAAGGGTCGTACGCAGCTCTGTGCGCTGCTGCTGGCTCATGGAGCCGACCCCACCATGAAGAACCAAGAGGGCCAGACTGCCCTGGACCTGGCCACGGCTGATGATATCCGGGCCCTGCTGATGGATGCCATGCCACCGGACGCCCTGCCCAGCTGCTTTAAGCCCCAGGCCACAGTGGTCAGCGCCTCAGTCATTTCCCCCGCCTCCACGCCGTCCTGTCTGTCCGCTGCCAGCAGCATAGACAATCTGGCCGGGCCACTTACTGAGCtggccgccgccgccgcctccGGGTCCTCCGGAGTGGCCGATGGAGCCACAGGCACCGACCGCAAGGAAGGGGAGATGGCCATGCTGGACATGAATATAAGTCAATTCATGAAGAGTCTGGGCCTGGAGCACCTGAGGGACATCTTTGAGAGGGAGCAGATCACTCTGGATGTGTTGGCTGACATGGGTCACGAGGAGCTGAAGGAGATTGGAATTAATGCCTACGGCCACCGACACAAACTCATCAAGGGTGTTGAGAGGCTGCTTGGCGGCCAGCAAGgtGGCAACCCCTACCTGGCATTTCATTGTGCCAGCCAGGGCACCATCCTGATAGACCTCGCCCCGGACGACAAGGAGTACCAgtctgtggaggaggagttGCAGAGCACCATCAGAGAGCACCGAGACGGAGGCAACGCTGGTGGTGTGTTCAGCAGATACAACATCATCAAGATTCAGAAGGTGGTAAATAAGAAGCTGAGGGAACGTTACACCCACCGGCAGAAGGAGATCGCAGATGAAAACCACAACCATCACAACGAGCGGATGTTGTTTCACGGTTCTCCGTTCATCAACGCCATTATCCACAAAGGCTTCGATGAGCGCCACGCTTACATAGGAGGGATGTTTGGAGCGGGTATCTACTTTGCAGAGAACTCCTCAAAGAGCAATCAGTACGTCTACGGCATCGGTGGAGGCACGGGCTGCCCGACCCACAAAGACCGGTCCTGCTACCTGTGCCACAGGCAGATGCTGTTCTGCCGAGTGACCCTGGGCAAGTCCTTCCTACAGTTCAGTGCCATGAAGATGGCCCACGCCCCCCCGGGACACCACTCAGTGATCGGGAGGCCCAGCGTCAACGGCCTGGCCTACGCAGAATATGTCATCTACAGAGGAGAGCAGgcCTACCCGGAGTACCTCATCACCTACCAGATCCTTAAACCGGAAAGCACGGCCCAGTCTGCTGCAGGAGCTGAGCAGAAGTCGTAGTTACTTtacatcgcacacacacacacacacacacacacacggactcGTTAT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003950 NAD+ ADP-ribosyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82166 lncRNA upstream 151068 14060922 ~ 14061171 (+) True G61332
XR_005639583.1 lncRNA upstream 306899 13904693 ~ 13905340 (+) True LOC120561318
XR_005639581.1 lncRNA upstream 307581 13903363 ~ 13904658 (+) True LOC120561317
XR_005639582.1 lncRNA upstream 307581 13903363 ~ 13904658 (+) False LOC120561317
XR_005639584.1 lncRNA upstream 387005 13812459 ~ 13825234 (+) False LOC120561319
TU82211 lncRNA downstream 20007 14252256 ~ 14253343 (+) False LOC120560400
TU82212 lncRNA downstream 29906 14262155 ~ 14262869 (+) True G61376
TU82213 lncRNA downstream 47883 14280132 ~ 14281656 (+) False LOC120560400
TU82225 lncRNA downstream 93141 14325390 ~ 14327533 (+) True G61389
TU82228 lncRNA downstream 95931 14328180 ~ 14329747 (+) True G61391
XM_039802181.1 mRNA upstream 535 14198755 ~ 14211704 (+) False LOC120560074
XM_039802180.1 mRNA upstream 537 14198758 ~ 14211702 (+) True LOC120560074
XM_039802182.1 mRNA upstream 537 14199407 ~ 14211702 (+) False LOC120560074
XM_039804269.1 mRNA upstream 23322 14147570 ~ 14188917 (+) True piwil2
XM_039804110.1 mRNA upstream 211968 13986231 ~ 14000271 (+) True atad1a
XM_039803875.1 mRNA downstream 2029 14234278 ~ 14246305 (+) True idua
XM_039802863.1 mRNA downstream 20662 14252911 ~ 14281770 (+) True LOC120560400
XM_039802864.1 mRNA downstream 33098 14265347 ~ 14281771 (+) False LOC120560400
XM_039802776.1 mRNA downstream 145005 14377254 ~ 14383227 (+) True unc119.1
XM_039802551.1 mRNA downstream 157222 14389471 ~ 14392583 (+) False c6h12orf43
TU82172 other upstream 70189 14141442 ~ 14142050 (+) True G61338
TU82171 other upstream 102693 14107483 ~ 14109546 (+) True G61337
TU81938 other upstream 1288403 12921147 ~ 12923836 (+) False G61139
TU81939 other upstream 1288403 12921147 ~ 12923836 (+) True G61139
TU81647 other upstream 2285638 11926183 ~ 11926601 (+) True G60897
TU82219 other downstream 51168 14283417 ~ 14283871 (+) True G61383
TU82226 other downstream 85290 14317539 ~ 14319506 (+) True G61390
TU82227 other downstream 85290 14317539 ~ 14319506 (+) False G61390
TU82315 other downstream 157354 14389603 ~ 14392578 (+) True c6h12orf43
TU82322 other downstream 199081 14431330 ~ 14434597 (+) True LOC120560925

Expression Profile