RNA id: XM_039803382.1


Basic Information

Item Value
RNA id XM_039803382.1
length 5241
RNA type mRNA
GC content 0.46
exon number 13
gene id trim36
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 21955578 ~ 21989582 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTGCACCAGTGAATTGGCTAGTGCTGATTCACTATGCGCTGCCTCTCTCAGCAGCGTCACTCTATTTAAATTTGCTCAGCCGTCGCTGTCGGCATCTTCTCCTCCTCCCGTGCGAGAAGTTTGTTTTTAGCCTGAACGAGAAACGCCGGACAAGGTGTAGTTTTTTGTTACACACACGTGCAGGCTTATATTTTCTCCCTCACCATGTCTGCAGAGAAGCGGCGTAGCAGCACAACCGCGGTCCCAATCAAGAACATCGAGAGGGAGCTGATCTGCCCGATCTGTAAGGAGCTCTTCACCCACCCGTTGATCCTGCCCTGCCAGCACAGCGTCTGCCACAAGTGTGTCAGAGAGCTGCTGATGCTGAACCATGAGGACTCTTTTGATGCTGGCTCCGAGTGCTCCCTGCCGGGCAGCCCCAGGTCCAGGGTGCCCTCCCCTTCCATGGAGAGGCTAGACAGGCTTGTGAGATCAGGTGGGTCTCGGGGCTCCATCTCGTCCCCGGGATGGCGCAGAGGTTCTGTGACTCCTCGGGTCACCACCATCCCATGCCCGGGCTGCCAGCATGACATCGACCTTGGTGAGCGCGGCATCAGCATGTTGTTCCGTAACTTCACCCTGGAGAACATTGTTGAGCGCTACCGCCAAGCCGCCCGCGCAGCCGTCGCGATCATGTGTAACATCTGTAAGCCTCCACAGCAGCAGGAGGCTACAAAGAGCTGTATGGACTGCAAGGCTAGCTACTGTAACGAGTGCTTCAAGCTGCACCACCCCTGGGGCACCCCCAAAGCTCAGCATGAGTACGTCGGTCCCACCACAAATTTTAGGCCCAAGGTGCTCATGTGTCCAGAGCACGAGATGGAGAAGGTGAACATGTACTGTGAGGTCTGCCGACGACCCGTATGTCACCTCTGCAAGCTGGGAGGTTCCCACGCCAACCACAAAGTCACCTCGATGAGCAGTGCTTACAAGATCCTCAAGGAGAAGCTGGCCAAGAGTATCCATTACCTCATCAGCAAAGAGGACCAAGTCAGGACTCAGATTACTGATCTTGACCTGCTCATCAATCAGACTGAGGAAAATGGCCAGCTAGCAGAGCGTCAAGCCAATGAGCACTTTGAGCGTCTGTTTGAGACTCTGCAGGAGAGGAAGTCCGAGATGCTAAGGTCCATCGAACAGTCTAGAAACCGACGCCTGGACCAACTTAAGGCTCAGGTGGAGGAGTACCAGGGCATGCTGGAGAACAGTGGTCTAGTGGGCTATGCTCAGGAGGTGCTGAAAGAGACGGATCAGTCCTGCTTTGTACAGACTGCAAAGCAGCTACACATCAGAATCCAGAAGGCCACAGAGTCTCTGAGGACCTTCCACCCTGCATCTGACCCCTGCTTTGATGAGTTTGTGCTGAACACATCTAGAGAAGAAACTCTGCTCAAAGAGATGTGCTTTGGTGGAgTTCCCGACCCTCCTCTGATTGACTTGTCCAATAGCAGGGTCTATAACGAGGCCTCAATCTGCTGGAGGCTGTCTGATGACCACCTACCTACAGATCACCACGTGCTTGAATACCGCCGACTCGGCGGCCCGGGCCAATCCCCATCGCAGGAGGACGGTGAGGACAGTGGGGTCTGGAGGGCTACAGACAGGGTTTATGGTCCCAGCACTGTGGTGTGTGACCTGGAACCGGACAGCCTGTACTCGTTCAGGGTCCGAAGCTGCAGGAACTCTATGTTCAGCCCCCACAGCCCTGAGGTCACCTTCCacacaccacctgcacctgCTTTTGGTTTCTTGTTCAGCGACAAGTGTGGCTTCAGTACGGAGCGGCTCATTCTAAACAAGCGACGGGACACTGTGGAGAGCGTAGCAAGCATGGCCTTCCTCCTTGCAGCAGAACGTGTGCAGACGGGCAGTTACATCGGACTAGACTACATCATTGGAGATATGGGCATCTCCCAGGGAAGACACTATTGGGCCTTCAAGGTGGAGCCGTACTCCTACATGGTTAAAGTTGGAGTGGCCTCTGACTCAAAGCTGCTTGAATGGTTTCACAATCCAAGAGATACCAGCAGCCCAAGGTACGACCATGACAGTGGACATGACAGCGGCAGTGAAGATGCATGCTATGAGCTCTCCCAGCCCTTCACCCTCCTCACCCTGGGCATGGGCAAACTCTTCATCCCCAAGacttcttcatcctcctctgcCTCCACAGCAAACGCATCCTCCGGTGACCCTGGCAACCGTGTGCTACCCATGCCACAGCGCTTGGGTGTATGTCTAGATTACGACGAGTGCCGGGTGTATTTTTACGATGCCGACACCATGAGGTGCCTTTATGAGAGGCAGGTGGATTGTTCTGGAACAATGTATCCAGCTTTCGGGCTCATGGGCAGCGGCAAGGTTCAACTGGAAGAGTTCATCACGGCTAAGAGACTGACCTTCTGAGGAGGGATGGAGCATGTTGATGCATTTAGACCTGCATCTGTTTAATCGTTGGCATGTTCTTGGAAGTTTCATTGACAGGGTGATGGGAGTACaatccaaatgttttttttttctgaaggtCAGATGAGGCAGATGTGATTAGGGCCTTTGGTTCTTAATGTGAAAATAGGATTTGTGCCAGAGACTGGCCTATTTAGAGTTGGCGTGTATAATGTATGATTCATACACAAGAGTATGATGCTGAATATTAGTGTCCACATACAAATGTCTTCAGAGGTTGGTACATGGTATGTGAAAGTTCTTCTCTACATACCAAAGGCTCTGTAGCTGTTAATTGTATTTGACGTGGTTTTAATTGCCAGCTACGATTAGCTGTTATTGTATCAGAATTGCCTGCAAAGTTAGTCTGCAACTACTTTAAatctttgttttaaaatgaaacgCCTTTGATCTTACACTGACCCTTTCTGTGTCAAGTAGGTTTATagattattttgtgtgtattaaTTATTGGGTGATCTTTTTTTCCTTGGCTCTTTTCTTTAACTATTTGTCTAAATGTAGCAGCATAGGTAAGATGTTATCTTTGTGGACCTGAAAGCCTTGTAGCTACTATGAAGCTAGCGCCTTTGTgcctttttgttgtatttttaggAAATGGGTCCCTTAGTTTGCTCTAGCAAGCAGATGTTGGTGTCATTGCACAAGCATTATGGAAATACTTAAATACTGTATGAGTTTTTACTGTAGGTAGTTTGATCACAGACACTGGTGTCAAAGTTATAACAGTTAATGGTATTTATTCTACGCATTTACTCTTGACTTCATCACAGAAAACACTACTTTTCCTTGTCACAGTTATGTTCAGCTGTTTTTGCACAATATGATGAATGAAACTTCGCACATGATAACAATCATCACATTTCAATCACTACCTAGTTTAGCTTCTTCACTTTAAATGTTGTAGACAAAACTGGCACATTGATGTCTCAGTGACTGTAACATTCACACAAGCGTTGACCTTTCCTTACTAACAAAAGGTAATCCTGGAGAAGTTACTTGGATTTTAAAGCCTCTCCCTGTTTGCACTGCACTGCATGTGACTCTATAACACCATAAAACCAGCCAGGTACCAGAACACTGTACTTGTGGTCAATGTCAGTTTGACAGCTGCAAAGTCACAAATAGCCAAACCGTGTTTGTCCTGGTGCTGACTTAAGTGCAACACACCACTCTGTGGCCTAGCAGcctttaaacacagtttaaaacGGCTATTCAGGTTCTTCACAAGAAGTGCTATCACAAAACACACTGTTCAGTACCTTTTTACTATTTAAACCACTGTTGACTTGCAGTGCAGACACTTGTAAGTGTAGCATATTAGTATGTCACCGGTGAGTTGGCTATCAGACGGATCACCTAAATGGTTGATTTGGCTTTGATTAAATCAGCTCAGTTATCCAAGTCTAAGAGAGCACACTACACagactgtttgtttttgtttgctgGGCAACCACACTCGGTTTTTGTATAGacgtatactgtatatgtgcctGCACATGGGTTTGTTTGTACATTCAGGTTTATTTTGATTTCTGGAGGGTTAGGGTaatcagtgtgagtgtgtgttttctcaggTGTCTGGCCCTGATTGGGACCCAATGCTACCTACCTCTATCTGTCAGGCCTGGAAAACCTTAACTACTGTACCTTTCCTCACAGAAACACGTTTGGTTTGATTTGCAGCTTTGTAACAGTCTGTTCGATATCTCCGCCTTCTCTTTAACGTCAGATAATGAGATGATATTGCTACAATTTTTGGATTTAACTTCCATGTACATATTAATCCAGAGTATattattttcagtgaaaaaaaaacaaaacgacaTCTTAAATGTGTATTAGCTGGTGTTTGCTTGTGCACTTGAAAGAGTATCACTATTGGTGGAAATTACTGTAAGCAGATGCTACCCTGTTCAGCTGCCTTTGTCAAGGGAGTGGTTTTCAAATGGTACTAACAACCTTTACTTCCTCCTTTTTGTGGTGTTGGTTTGAGTagtcagtttaaatgttttggtTATATGATTATATGagggtttttgtttttggttagAACACTTAAGTTCATGATCTTACATACAATGAAATATTGGATTTCTGTGATTGTGCATATGTCTCACAGGTGTTTCTGTCAATTATTTCCACTCCAATTTTCCGAGGTCAGACCTGAACCTTGATTCCTGTATTTTAAAACTGACTGTTTAATCATCTTTAAAACACGTCTATGCATTTATGAATTTGCAGGACAGGTTTacggttttattttcatcacagAATGTATTCATGTTAATTACAGAACAGACAGctgaatgttcttttttttttgggggggggggttcttttcatttgtttcactCTGGGTCACAGCACAGTTTTATGTAGTTATAGAGAACTGATAAAAGGCGTGTAATCTCAACCTCTCATCTGATTCTAAATTTAAATGCATGCTAGCCTGCTTTTCAGTAATGCATTTAGAACCAAATATTTAGCAGGCTGGCTCTCAATTTAATTCCAAGCTAGCACTTTAAAAATCTGTAAGATATCAGCAGCTGTTTGGCTCTGCAGGTGTGtataataagtgtgtgtgtgcaatattATTAAACAGGCTGTAGGAAACAGTGTAGACAGACATAAGCCTATAAAGACAATTTGCACTGTTATAGTTTACTTTGTGGTTTAAATGGGCTTTTCCATGATACAAAACACTACTTGACttgtaattgtgtttttttttt

Function

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0016567 protein ubiquitination biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85374 lncRNA upstream 83508 21875445 ~ 21875687 (+) True G63715
TU85373 lncRNA upstream 114057 21844832 ~ 21845138 (+) True G63714
XR_005639467.1 lncRNA upstream 338484 21608823 ~ 21620711 (+) True LOC120560273
TU85279 lncRNA upstream 340593 21616223 ~ 21618602 (+) True G63641
TU85261 lncRNA upstream 472157 21486769 ~ 21487038 (+) True G63628
TU85491 lncRNA downstream 142302 22131884 ~ 22150124 (+) True G63792
TU85584 lncRNA downstream 914453 22904035 ~ 22905966 (+) True G63872
TU85631 lncRNA downstream 997599 22987181 ~ 22988040 (+) True G63914
XR_005639470.1 lncRNA downstream 1230268 23219850 ~ 23245368 (+) True LOC120560300
TU85721 lncRNA downstream 1285338 23274920 ~ 23281109 (+) True G63976
XM_039803369.1 mRNA upstream 7282 21937000 ~ 21951913 (+) True pggt1b
XM_039803368.1 mRNA upstream 22415 21930173 ~ 21936780 (+) False LOC120560655
XM_039803367.1 mRNA upstream 22415 21930202 ~ 21936780 (+) False LOC120560655
XM_039803366.1 mRNA upstream 22415 21930205 ~ 21936780 (+) True LOC120560655
XM_039803346.1 mRNA upstream 41316 21908636 ~ 21917879 (+) True fem1c
XM_039802938.1 mRNA downstream 1771 21991353 ~ 22116539 (+) False ccser1
XM_039802939.1 mRNA downstream 1771 21991353 ~ 22085034 (+) False ccser1
XM_039802935.1 mRNA downstream 1772 21991354 ~ 22121315 (+) True ccser1
XM_039802940.1 mRNA downstream 1772 21991354 ~ 22116406 (+) False ccser1
XM_039802941.1 mRNA downstream 1772 21991354 ~ 22116363 (+) False ccser1
XR_005639510.1 other upstream 360396 21588876 ~ 21598799 (+) False LOC120560787
TU85087 other upstream 1281279 20676417 ~ 20677916 (+) True G63480
XR_005639482.1 other upstream 1470357 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other upstream 1470357 20477812 ~ 20488838 (+) False wdr31
TU84360 other upstream 2510245 19434907 ~ 19448950 (+) False rasl10a
TU85622 other downstream 940317 22929899 ~ 22930205 (+) True G63905
TU85875 other downstream 1703080 23692662 ~ 23693291 (+) True G64108
XR_005639471.1 other downstream 2834136 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 2834137 24823719 ~ 24834620 (+) False cdc14b
TU86491 other downstream 3695390 25684972 ~ 25696570 (+) False LOC120561182

Expression Profile