RNA id: XM_039803419.1


Basic Information

Item Value
RNA id XM_039803419.1
length 4426
RNA type mRNA
GC content 0.44
exon number 25
gene id adgrd1
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 1680081 ~ 1720893 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCAATTCCCACGTTCAGTCCAACAAGCCAGTAAGGAGCTTCTCTTCTCCTGGCCATTTCCAGATGCAgccacagaaacacaaagaaacaagTACTAGTTTACTGTATCACGGATTACAGTTTTCTGCGTGGAAGTTAAAGTTGGTGTTCAGAATTTTATCATGAGAGGAACACTTCTGACGTTTTCCTGCCTCGTGCCAGAACACTAaattgaataattttttttgttctggtactgtaattattatttatccATATTTCAAAGATTGGACACATGGACTGATCAGAAATTTTCACAGCTTGGAATAATGAGTGACTCCTCCTGGATTCATCTTTGTTTGGGGATTTAATAGTTGTTTTCAGAAAAGACGTGTGTATGGTACATTTTTCAAAAGCTATGGAATTTCCTTTACGAATTCATCTTTTTTCAGCTTTTGTCTCCTGTATCAAGgtTTATGCTCAAGTGGTGAAGCATCCAGGCCTGCAGGTGTTGGCCACGGCCTCACATTATTGGCCTCTTGATGCTGTGGACGGAATCCATGAACTGTGGGACCAGATTGGAAACAGACCAGGTTATGTTAACGGAAGTAACATAAATATTGTTGAAGGAATGGTCAACAAGGGCATCTTTCTGAATGGAGATAACGGCGGTACCTTTCTCCACTTTGGAAACTACCAGAACTCTTGTATTAGTGACCCTACTTGGTGTGGTCCTGAGGGAATTACCTTCTCCTTTTTTTGGAAAAACCATGAGGCAGAGTCACGTTTTGCTGTAGCCTCTGGAGGGAAAGTTATCTCTAATGGCTTCTCTGTCTACACCAATAACTATGGAGGATACGTGGAGTTTTACACTCGAGGTAACAACCACAGATGGAAGGCCAACATCAGAGTTCCAGGGCCTTACTGGACCCACATTCTCTTCACATGGACAACAAAGGATGGTCTGAAAGTATATATTAATGGGACCTTCATTGCTGGTGACACAGCTGGCAGTGTCTCAGAGAACTATGGGGACCCATACCCAGACCTTGTCATCGGAACTAGAAACGACAGAGCATCTGGTCACTATGTAACAGGCGCCTTTGATGAGTTTGTCATCTGGGAAAGGGCCCTTTCATCTCACGAGATCTTGCTCTACTACAGTGCAGCCATAGGCCAGGCCATGGTTTCTGTCACAACACCCAGACTCTCCAAAGAAATCACTTCAACTGCACCAACAGTCACAGCCACTGAAGTGAGTCCTTCTGTCGTCAGCAGTAAGCACGAGGACGTCCAAAGCTCCCAGGACCTGGAGTCCTTGCCGATGTTGGGCTTTCTTAAGGCACTGCCCAATAGGACCATTCCTCACAACACTGCCAACAACCTCACACAGGCTTTTCTCAAAAGTGTGGAAGAAGTGCTGTCCTCTCCAGGGCTGCCTGAGCAGCAGTCCATCCCTGTGGTCAGCGGTCTTATCGAGACCGTGGACAGAGTGATGGAACACATGGTGACTAACCTGGAGCCCAGCCCGAactctctcatctctctggGTGGAACATCTTTTGTTGCAGATTACTCTCTGATGAAATTCCCACAGAACTACAACCTGCCACATTACCGCTTCCCCACACAAGGCAAGAGTTACATCTCCGTGCCCGGAGAGGCCTTCACCATGCAGTctcaAACCACCATAGTTGGCCTCTTCTACCACAACATGCACAACTACTACAAGGAGATCAGCCCAGTCAAGACCAGGATTAACGAAGCAGCTGATTTCAAGAATCACAAGATCCAGGTAGCAAGCTGTCTGATCTCTCTAAAAGTGGAGCCTTCACCGGCGCTGTCAGTCAACCTCTCTGGAGCCCCACTCATCAAGATTGTCCTCACCCACATCCTGactAAAGAACAGCAAGAGCAAGTCCTAAATCAGAGCAATAAAGTCTTCCTCTACTGTGCTTTCTTGGACTACAGTTCAAAAGAGGGAGTATGGTCCAACGAAGGTTGTGTACGCTCAGATGGAAACATGACatactctgtgtgtttgtgcaaccACCTTACCAACTTTGCCATACTTATGCAAGTGGTTCCCTTAAAGCTCACTACTGGCCACAGGGTGGCACTATCAACCATCGGTTATGTCGGCTGCTCAATCTCCATCTTCTGTCTTGCCATCACTCTGGTCACTTTTGCAGTTCTGTCgTCAGTGAGTACCATTCGTAACCAACGCTACCACATCCATGCCAACCTGTCCTTCGCCATCCTGGTGGCTGAGATCTTACTGCTCATCAGCGCTCGCTTCGACCCGGGCACGCTGCCTTGCAAAGTCATGGCTGTCCTGCTTCACTTCTTCTTTCTGAGCGCCTTCGCCTGGATGCTGGTGGAGGGCCTCCACCTCTACAGTATGGTGGTCAAGGTGTTTGGCTCTGAGGGCAGCAAGCACTTCTACTACTATGGCATTGGCTGGGGCTCTCCATTGGTAATATGCGTGGTATCCATGACATCAGCTCTGAACAGTTATGGCGAGGTTGACAACTGTTGGCTGTCACTGACGAATGGAGCCATCTGGGCATTTGTGGCACCGGCTCTTTTTGTCATTGTGGTGAACATTGGCATTCTGATATCCGTGACCAGGATCATATCTCGAATCAGCGGAGAGAGCTACAAGGTTCATGGAGACGCCAACGCAGTCAAGCTGACTGTGAAGGCGGTGGCTGTGCTCCTGCCTATACTCGGCATTTCCTGGATCTTTGGCGTTCTCGCTGTCAACACACACTCTTTGCCATTCCTGTATATTTTTGCTGTATTCAACTCGTTACAAgGGTTCTTTGTCTTCTTGTTTCACTGTCTTCTCAACTCTGAGGTCAGAGCTGCTTTCAAACACAAAACCAAGGTGTGGTCTCTTACCAGCAGTTCCATCCGAAACATCAATGTGAAGCCGTTCAACTCTGACATTATGAATGGAAACAAGGAGGGTGTGACTCCCACCAAGATGAACACATGGGACAAAAGCAGCAACTCGGCTAATCGTATCGACCTCTCCGCCGTGTAGAACCATTTCTGTCCGTGACAGGAGAGCAGTCTGAAGCTCACTAGTGTAGAATGACAAACACTGGCCAGAGTATTCTCCCACTATGTTATGTAATGAATCAGACACTCATCTGCTCAAGTGAAAGTGATACTGTACCAATGGAGGTGTTGTGTAGCTGAATAATAGCTTCACCTTTTAAAGACAAACAGACTCTAAGGACTGTGCCTTATTATTATCTCATAAAAACATATTGTGTTCCCAAAAACGAGAGCAGAGATTTCTGAGGACGTCAGTGTGAGTCTTGACATCCAGGAGTGTAGTTCAGGGTCTAGCATCAATGCTCTGTGTGGTGGAGCTCCTAGATTCCATCTGACATCTGTATATTGCAGTTGATTTAGTAATTAGTGAGAGTTTATTTAACtgatgcttatttgctttcttgctgaaagTTAGATGAAAAGACTGACACCACTTTCATGTCTGTTTAGTCAATATGAAGCCaccgccagcagctggttagaaAGAAATACCAAGGAAAGCTGTATATTTTCCTTAGATATAGTGTTTGATTTAtgccttaaagctatagtgtgtagtttctgccgcccccatgaggaattctaagtaatgacaacaaaactgtcggcgcgtccacatgatacaagcctacCGTGACCGCACCACCACAAAGGACTATAAATGAGCTTATTTTTTCCTGAATTATCTTCTCCAAGATTCACCTGATTTATACAGCTTTAATCCAACGTTGGGGACACAACAACTGCATGATAACAATGGCTGAAGCAGCAGTGAATTGGACCCTATGTAAATCTgatataatgtatttatttattttgtgattCTGAGTTCTCTATCATGTCTTCTGCAAAGTGTCACAGCTCAACAATCAGTATGTTCTCAtgttaaattgtatgtctatTTGTATGTTTTCCCTTTCAAAATGAACTGGTATATTTGCAGTACCTCACGTCTTAGTAAGCTGCAGTTTGTTATGCTTTTTGAGGAATCGTGAATACTGGCTGTGTTTTGGACACAATTCTGTGAAGTTTATGTTGTCTTTAGCTATTTCTGTTGCAAATTTATTTCCAAttttcttaaattttttttgtacaaTGAAATATGTTCTACAGCAGAGGGACTTTACAAGGttattgcttttatttcttaaaatacTGTGAGAATAGAGGGAGATGACATCATTTATAATGTCATTGATCTTACACTGTACCAACATTAGGTTTCCTTTACTGTTAGTCACTCTGCGCTCACTTTTCATGTCAAATCTAAagttagatatttcaatatgcttGTATGGCCTTTAATGATTGTTGTCTTATGGTACTATGGTTTGTGCTTCCAGTTATCTTTATTATAAAATCGTTTATGACAACAAATCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78361 lncRNA upstream 117563 1476674 ~ 1562520 (+) True G58286
TU78366 lncRNA upstream 117563 1476674 ~ 1562520 (+) False G58286
TU78338 lncRNA upstream 322834 1356850 ~ 1357249 (+) True G58269
TU78326 lncRNA upstream 346200 1333501 ~ 1333883 (+) True G58260
TU78322 lncRNA upstream 348085 1331546 ~ 1331998 (+) True G58256
TU78489 lncRNA downstream 212114 1933007 ~ 1951272 (+) True G58372
TU78506 lncRNA downstream 341181 2062074 ~ 2062569 (+) True G58383
TU78505 lncRNA downstream 341208 2062101 ~ 2062569 (+) False G58383
TU78509 lncRNA downstream 341727 2062620 ~ 2062956 (+) True G58384
TU78508 lncRNA downstream 341798 2062691 ~ 2062956 (+) False G58384
XM_039803423.1 mRNA upstream 12551 1664984 ~ 1667532 (+) True LOC120560673
XM_039803424.1 mRNA upstream 12551 1664984 ~ 1667532 (+) False LOC120560673
XM_039803421.1 mRNA upstream 148111 1501590 ~ 1531972 (+) True piwil1
XM_039803422.1 mRNA upstream 148111 1501590 ~ 1531972 (+) False piwil1
XM_039804486.1 mRNA upstream 199457 1477088 ~ 1480626 (+) True fzd10
XM_039803420.1 mRNA downstream 912 1721805 ~ 1735615 (+) True ulk1a
XM_039803064.1 mRNA downstream 15785 1736678 ~ 1771673 (+) True ep400
XM_039803066.1 mRNA downstream 15785 1736678 ~ 1771673 (+) False ep400
XM_039803065.1 mRNA downstream 15785 1736678 ~ 1771673 (+) False ep400
XM_039803069.1 mRNA downstream 15785 1736678 ~ 1771673 (+) False ep400
TU78000 other upstream 1467713 210742 ~ 212370 (+) True LOC120560799
TU78941 other downstream 1157508 2878401 ~ 2879744 (+) False lman2lb
TU79382 other downstream 2396386 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 2703248 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 2711278 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 2711775 4432668 ~ 4432739 (+) True trnaq-uug_2

Expression Profile