RNA id: XM_039803422.1


Basic Information

Item Value
RNA id XM_039803422.1
length 3175
RNA type mRNA
GC content 0.49
exon number 21
gene id piwil1
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 1501590 ~ 1531972 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaagtaaaataaaaatgtacaagcGCATTAATTTGCTCAGTGAAGAGGTCTATAACTAAATTGCACTCGTAGATAAATGCACCTGTGGTAAACTTTCTTTCGTCGACGGAGAAAGGACGTTTTCTTCAGAAAGCATCATTTAAGACGGTCCGAAAATGACTGGTCGGGCACGAGCCAGATCAAGAGGCAGAGCACGAGGTCAAGAGACTTCCGCACCGGGAGCGAGCCAGGCTCGAGAGCCTGCACCAGCAGCTCCCCCACCCGCAGAGGGAGAGCTGGTTGgtagagggagacagaaaggtGCTCCAGGACCCTATTCTGCAGAAGctATTCTACAGATTTCAGGCGGATTTCAGCAGGTGAAGTTGGGAGAAAGAGGTGGACGCCGCCGGGATTTTCATGATGCAGGGGTTAACACCAGGCAGGCTATGGAGCATGTTAAGGACTCAAAGTCTGGAACATCTGGTGCTGCCATTCAGTTGACGGCGAACTTCTTTCGCATTGTGTCCCGCCCTCAGTGGGTGCTGTATCAGTACCATGTAGACTTCAAACCACCAATGGAGGCTCGTCGCCTGAGATCTGCCCTCCTCTTTCACCATGAGGAAGTACTTGGCTCAGCGCGGAGCTTTGATGGCGCGCTGCTTTTTTTGCCTCACAGATTGCACAACAAGGAAACTGTGCTCCACAGCGAGACAAGGAATGGAGAGAAGGTTCAGATAACTGTCACCCTGACAAATGAACTGCCACCTACATCGCCAGTGTGCATTCAGTTTTACAACATCATATTCAGAAGGATCTTGAGAATTCTTGACATGCAGCAGATAGGACGCAACTACTACAACCCCAAAGATCCACTGAACATCCCACAGCACAGGCTGACAATCTGGCCTGGATACACCACAACCATTTTGCGGTACGAGTCATCCATTATGCTGTGTACGGACGTAAGCCACAAGGTGTTGCGTAGTGAGACGGTCCTTGACTTTATGGCAAACCTGAGGCAAAAGTGTGGAAATCAACGCTTCCCTGAGATCTGTGCCAAAGAGCTTGTTGGACTCATAGTCCTCACAAAgtacaACAACAAGACCTACAGGATTGATGATATTGCTTGGGATCACACTCCCAACAACACATTCACAAGAGGAGACAAAGACATATCCTTTAAGAACTACTACAAGACTcAATATAACCTGGACATCACTGATGGGAACCAGGTGCTGCTGGTCAGCCATGTGAAGAAGGCGATGGGTCCTGCTGGAGGTCCTCCTCCTGGCCCTGCCATGCTCATCCCAGAGCTGTGCTACCTTACAGGCTTGACTGACAAGATGCGAGCTGATTACAACATCATGAAGGACTTGAGCACCCACACCAAGTTGGAACCAGAGCAGAGGGAGGTTCGCCTCAACAGATTTGTTTCTAATATACACACGAATACTGATGCACAGGCGGAGTTGGATAAGTGGGGACTCAACTTTGATAAGCAGCTCCTGCATCTGACTGGCAGAGTCCTGCCAGCGGAGAGGATTTTCCAGGGACCAAAATCGTATGACTACAACCCCAGGGCAGCAGACTGGTCCAAAGAGATGCGTGGGGTTCCTCTGATCAGCTCTCCTCAGCTGGAAAGCTGGCTCATGCTATACACCCGTCGTAACAGCAACGAAGCCCAGTCCCTCCTGCAGACCCTAAACAGAGTCTCGGGTCCACTTGGTTTCCGCATGCAGAGAGCGGTTATGATAGAGTATGAGGATCATCAGGAGTCTCTTCTCAGAGCCCTGCAGCAAAATGTTGGACCCCAAACGCAGATGGTGGTGGTGGTCCTCCCCAGCAACAGGAAGGACAAGTATGATAGCGTCAAGAAGTACCTCTGTGTGGACAGCCCCGTTCCCAGCCAGTGTGTGGTTTCCCGTACCATAAGCAAACCTCAGACACTCATGACTGTGGCTACCAAGATTGCTCTGCAGATGGCTTGTAAGATGGGAGGAGAGCTCTGGAGTGTGGAAATCCCTCTCAAACAACTGATGATTGTGGGCATTGACTGCTACCATGACACACTTGCTGGGAAAAGGTCCATCGGAGCTCTAGTGGCCAGCCTCAACCAAGGAATGAGCAGGTGGTTCTCAAAGTGCGTTCTGCAGCACAAAGGCCAGGAAATTATGGATGGACTGAAGATGGCCTTGAGTGctGCACTGAAGGCCTATCTGAAGTTCAACAACTGCCTGCCTTCGCGCATCATTGTGTACCGGGATGGAGTGGGAGACGGCCAGCTGCACAGCGTGGTCAACTATGAGGTTTCACAGATCATGGACTCCATCAAGTCCATGGGCCACGACTATGTGCCCAAGCTGAGTGTGGTAGTGGTGAAGAAGCGCATCAGCAGCAGGTTTTTCGCTCACATAAATGGAAAAGTGACCAACCCTCCACCAGGTACCATCGTTGACTCTGAGGTCACCCGTCCAGAGTGGTATGACTTCTACATAGTGAGCCAGGCTGTCCGCAGTGGAAGCGTCTCCCCAACCCACTACAACGTTGTGTACGACACCAGTGGACTGAAGCCTGATCATATGCAGCGACTTACCTACAAGCTGTGTCACATGTACTTCAACTGGCAGGGGATCATCCGCGTGCCCGCTCCCTGCCAGTACGCCCACAAGTTGGCCTTTCTTGTGGGTCAAAGCATCCACAGGGAACCCGGTGTGAAACTGGATGATCTCCTCTTCTACCTATAAAAGGATAAAAAAGACAAGCTATCTGTTTGGCTGTGACTCTTAAGTCACCTTGTGAAAAACCATATGTAAACTTTTGTTACATGAGTTctcttcagtttaaaaaaaatgcaagttaGTTTTGACAGTGCTAAgagtttgtttgcatttctagCCTCAGAATGCCCTGTGTAACAAGTTATGCAGTTCAAGTGCTTTGTTTTACACATTAAAGTCTAATAACTAAGACAGCATTCCCCAGGTCTAAAGCTAGCACATGTGCTAAAATGATAAGTGATGCACCCTGTCTGCTGTTGGAAATACACTTTTGAGgttttgttaagtacatgacATTGTTCAGAGTAAAATGTCACATGGAACTTTAATTGAGTTAACTCAAGCCGGCCCTGAAATGAGAAATATTTCCGTCTGTGTCGTTATTGTATTCACATAAAACTTCATTACCACTATTA

Function

GO:

id name namespace
GO:0007281 germ cell development biological_process
GO:0031047 gene silencing by RNA biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0034587 piRNA metabolic process biological_process
GO:0043186 P granule cellular_component
GO:0034584 piRNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78338 lncRNA upstream 144341 1356850 ~ 1357249 (+) True G58269
TU78326 lncRNA upstream 167707 1333501 ~ 1333883 (+) True G58260
TU78322 lncRNA upstream 169592 1331546 ~ 1331998 (+) True G58256
TU78321 lncRNA upstream 170252 1331046 ~ 1331338 (+) True G58255
TU78297 lncRNA upstream 388550 1112754 ~ 1113040 (+) True G58237
TU78455 lncRNA downstream 169935 1701907 ~ 1728333 (+) True G58347
TU78489 lncRNA downstream 401035 1933007 ~ 1951272 (+) True G58372
TU78506 lncRNA downstream 530102 2062074 ~ 2062569 (+) True G58383
TU78505 lncRNA downstream 530129 2062101 ~ 2062569 (+) False G58383
TU78509 lncRNA downstream 530648 2062620 ~ 2062956 (+) True G58384
XM_039804486.1 mRNA upstream 20964 1477088 ~ 1480626 (+) True fzd10
XM_039804544.1 mRNA upstream 105395 1371784 ~ 1396195 (+) True glt1d1
XM_039804545.1 mRNA upstream 105794 1371784 ~ 1395796 (+) False glt1d1
XM_039804456.1 mRNA upstream 171967 1157470 ~ 1329623 (+) True si:dkeyp-14d3.1
XM_039803423.1 mRNA downstream 133012 1664984 ~ 1667532 (+) True LOC120560673
XM_039803424.1 mRNA downstream 133012 1664984 ~ 1667532 (+) False LOC120560673
XM_039803416.1 mRNA downstream 148109 1680081 ~ 1720893 (+) True adgrd1
XM_039803417.1 mRNA downstream 148109 1680081 ~ 1720893 (+) False adgrd1
XM_039803419.1 mRNA downstream 148111 1680083 ~ 1720893 (+) False adgrd1
TU78000 other upstream 1289220 210742 ~ 212370 (+) True LOC120560799
TU78941 other downstream 1346429 2878401 ~ 2879744 (+) False lman2lb
TU79382 other downstream 2585307 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 2892169 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 2900199 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 2900696 4432668 ~ 4432739 (+) True trnaq-uug_2

Expression Profile