RNA id: TCONS_00074605


Basic Information

Item Value
RNA id TCONS_00074605
length 3116
RNA type mRNA
GC content 0.54
exon number 20
gene id XLOC_038033
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 37481434 ~ 37749973 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCTAAGTCCTTTGATCTCCTCTTTCTCGCATCCTGGTGTAAGGGATTATTCCCAGCTGACCCTTGACCTAACCAGGAATGAACTTATAGTCGGAGCAAGAAACTACCTCTTCAGACTAAATCTCAGCAACATTTCACTAATTCAGGCAACGGAATGGGGGCCAGACGAAGACACCAGGAGGTCCTGTCAAAGCAAAGGGAAGACGGAGCTGGAGTGTCAAAACTACATCCGGGTGCTGCTTGTCAACAAGACAGAGGTGGTCACCTGCGGGACAAATGCCTTCCAGCCTCTTTGCATCACCAGAGAGGCAGGGAACATGAGCAGAGTGTTGGAGAGGGTGAACGGAGTGGCCCGCTGTCCCTATGACCCCCGTCATAACTCCACAGCGGTGGTGACTGAAAGTGGAGAGCTGTACGCTGCCACGGTCATCGATTTCTCTGGACGGGACCCTGTCATCTACCGCAGCCTTGGAGGAATGCCGCCTTTGCGGACCGCCCAGTACAACTCCAAATGGCTTAATGAGCCTCACTTCATCTCGGCTTATGATGTGGGTCTTTTCACCTTCTTCTTCTTGAGGGAGAACGCAGTGGAGCATGACTGCGGTAAAACGGTGTACTCACGGGTGGCGCGGGTGTGTAAAAATGACATTGGAGGCCGATTCTTGCTGGAGGACACGTGGACCACTTTTACGAAGGCCCGACTCAACTGCTCGCGGTCAGGAGAAATCCCTTTCTACTATAATGAGCTACAAAGCACCTTCTACCTGCCCGAACAGGACCTCATCTATGGGATCTTCACCACCAATGTGAACAGCATTGCTGCCTCTGCAGTTTGCGCGTACAACCTCAGCGCAATCACACAGGCTTTCAACGGGCCCTTCCGCTCCCAGGAGAACCCTCGCTCCACGTGGCTGCCCACCCCCAACCCCATCCCCAACTTCCAGTGTGGGACCATAGATGAAGAAGGGCCTAATGAAAGACTTACCGAACGCAGTCTGCAGGACGCCCAGCGGCTCTTCCTCATGAACGATGTGGTTCAGCCAGTTTCTGTGGATCCACTGGTCTGGCAGGATGACGTCCGCTTCTCTAAGTTGGTTGTTGACATTGTACAGGGGCAGGACTCATTGCATCATGTCATGTACATAGGCACAGAGTATGGGACTATTCTGAAGGCGCTGGCAACCACAAATAAGAGCCTGCAAGGTTGCTACTTGGAGGAGATGCAGCTCTTCCCTCCTGGATTGCAGCAGCCAATCCTGAGCCTTCAGATTCTCCATGGCGACCGGACTCTTTTTGTGGGCCTGAATGACAAAGTGCTCAAGATCCCTCTAGCGAGATGCTCCAGCTACAAAACTGAGTTGATGTGTTTGGATGCACGCGACCCTTACTGTGGTTGGGACCGAAAGCAGCGGCGTTGCACCACCATTGAGGACAGCTCCAACATGAGCCAGTGGTTCCAGAATATCACTGCCTGCCCGCTGAGGAACCAAACCACAGATGGTGCGTACGGGCCCTGGGCTCCATGGCAGCCCTGTAGCCATGATGATGGTGAAGGCACCAGCACGTGTCTTTGTCGATCGCGGGTATGCAATAGTCCACCGCCTCGTTGTGGAGGAAAAAACTGCCAGGGTCCCACCATTGAGGTGTCCAACTGTTCAAGgaaTGGAGGATGGACACCATGGTCGTCCTGGGGCCAGTGCAGCACAAGCTGTGAGATTGGGTTTGAAGTTCGCCAGCGGTCCTGTAACAATCCTTCACCCAGGCATGGAGGCCGAGTGTGTGTGGGGCAAAGCAGAGAACAAAGATTCTGCAATGAGAAGGTGTCATGCCCTCAGCCTATCTTCTGGTCATCATGGTCTCCCTGGTCCAAGTGCAGTGCAGATTGTGGTGGAGGTGTGCACTCTCGCTCCAGGAACTGTGAGAATGGAAATAGCTGTCCAGGGTGTGCGCTGGAGTACCAAGCATGTAATTTGGAGTCCTGTCCAGAGGTGCGCCGAAACACCCCGTGGACCCCTTGGATGCCAGTGAATATAACCCAAGGAGGGGCACGGCAGGAGCAAAGAGTCCGCTACATCTGCCGGGCTCAACTAGCTGACCCTCATGAACTCCAACTGGGCAAGCGTAAGGTGGAGACACGCTTCTGTCCCAATGACGGGATGGTAACCTGCGAAACAGACTCTCTTGTTGAGGAGCTTCTCAGAATGCCTGGTGTCCGACTCTCAGGCACTGGCTGGTCATCATGGGAGATGTGGTCAGCTTGCACTCAGGAATGTGCCAAAGGCTACCGCACTCGCAAACGCAGCTGCACCAACACAGATGGCAAAAACATACCCACTGCCTGTCGCGGATCGCCTGTAGAATATCAGGACTGCAATCCTCAGCCCTGTCCAGTTAAAGGCGCCTGGTCTTGCTGGTCATCATGGTCGCAGTGTTCGGTTCCCTGTGGAGGCGGACACTACCAACGAACACGCACATGTACAAGCCCTGCCCCTGCCAATGGAGGGGACATCTGCATCGGCTTGCACACAGAGGAGGCTCTTTGCAACACGCATACTTGTGATGGTGGCTGGATGGCCTGGTCTGTGTGGTCTGAGTGTGATGATTCAGGCCTGCAGCTGCGCAGTCGAGTGTGTGGAGCTCAATCCATGCCATGTGCGGGAAACAGCTCCCAGCACAGAGACTGCAATGAGATCCCAGCCATTCTTCCGGCATCCAGCTATGAGAAGGACCAGCAGTGTGGAGGGTTCACTCTGCTCCACCTGATAGCGACAGGTGTGTCGTGTTTTCTTGGTGCCGGTCTGCTGTCTTTCCTGGTGTATGTTTACTGTCAGCGGTTCCACAAGCCCTCGCAGGAGTCTGCCATCATCCATCCCACCACTCCCAACCACCTCAACTACAAGGGCAACACCACACCAAAGAATGAGAAATACACACCCATGGAGTTCAAGACTCTGAATAAGAACAATCTCCTGCCAGACGAGAGGACAAACTACTTCCCTTCACCGCTTCAGCAGACCAACGTCTACACCACCACGTACTACCCCACAGGACTGGGCAAATACGACTACCGGCCGGACTCCTCACCCTCGCCCTGCAGAACCTATAACCACAGCTGA

Function

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0060385 axonogenesis involved in innervation biological_process
GO:0048843 negative regulation of axon extension involved in axon guidance biological_process
GO:0050975 sensory perception of touch biological_process
GO:0048675 axon extension biological_process
GO:0007411 axon guidance biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0071526 semaphorin-plexin signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0045499 chemorepellent activity molecular_function
GO:0030215 semaphorin receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-187 Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Acts upstream of or within axonogenesis involved in innervation and sensory perception of touch. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SEMA5B (semaphorin 5B).

Ensembl:

ensembl_id ENSDART00000138345

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075426 lncRNA downstream 344178 37118184 ~ 37137256 (-) True XLOC_038031
TCONS_00075007 lncRNA downstream 460963 37015729 ~ 37020471 (-) True XLOC_038030
TCONS_00075425 lncRNA downstream 521773 36956993 ~ 36959661 (-) True XLOC_038029
TCONS_00075424 lncRNA downstream 540684 36937446 ~ 36940750 (-) False XLOC_038028
TCONS_00074612 lncRNA upstream 203474 37817266 ~ 37820212 (-) True XLOC_038034
TCONS_00075008 lncRNA upstream 456292 38070084 ~ 38071916 (-) True XLOC_038037
TCONS_00075427 lncRNA upstream 737789 38351581 ~ 38352885 (-) True XLOC_038040
TCONS_00075428 lncRNA upstream 944847 38558639 ~ 38559750 (-) False XLOC_038044
TCONS_00075429 lncRNA upstream 944847 38558639 ~ 38560263 (-) True XLOC_038044
TCONS_00074604 mRNA downstream 113957 37341427 ~ 37367477 (-) False XLOC_038032
TCONS_00074603 mRNA downstream 113957 37341427 ~ 37367477 (-) True XLOC_038032
TCONS_00074602 mRNA downstream 114553 37341240 ~ 37366881 (-) False XLOC_038032
TCONS_00074600 mRNA downstream 557046 36896257 ~ 36924388 (-) True XLOC_038027
TCONS_00074594 mRNA downstream 1606383 35872698 ~ 35875051 (-) True XLOC_038018
TCONS_00074613 mRNA upstream 258785 37872577 ~ 38021997 (-) False XLOC_038035
TCONS_00074614 mRNA upstream 258930 37872722 ~ 38021889 (-) True XLOC_038035
TCONS_00074615 mRNA upstream 415683 38029475 ~ 38042939 (-) False XLOC_038036
TCONS_00074616 mRNA upstream 416772 38030564 ~ 38036984 (-) False XLOC_038036
TCONS_00074617 mRNA upstream 419142 38032934 ~ 38042823 (-) True XLOC_038036
TCONS_00074599 other downstream 698769 36782547 ~ 36782665 (-) True XLOC_038026
TCONS_00074598 other downstream 710771 36770357 ~ 36770663 (-) True XLOC_038025
TCONS_00074597 other downstream 715406 36765623 ~ 36766028 (-) True XLOC_038024
TCONS_00074596 other downstream 720140 36760889 ~ 36761294 (-) True XLOC_038023
TCONS_00074595 other downstream 1360908 36118960 ~ 36120526 (-) True XLOC_038020
TCONS_00074610 other upstream 23165 37636957 ~ 37749919 (-) False XLOC_038033
TCONS_00074611 other upstream 133795 37747587 ~ 37749919 (-) True XLOC_038033
TCONS_00074619 other upstream 590615 38204407 ~ 38204528 (-) True XLOC_038039
TCONS_00074623 other upstream 855654 38469446 ~ 38469566 (-) True XLOC_038043
TCONS_00074627 other upstream 1616734 39230526 ~ 39255210 (-) False XLOC_038048

Expression Profile

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