RNA id: XM_039803434.1


Basic Information

Item Value
RNA id XM_039803434.1
length 2006
RNA type mRNA
GC content 0.43
exon number 5
gene id zdhhc12a
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 34280979 ~ 34289653 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCAACTCTCCGTATcaaaataaggaagaggctaaTGGATAATATAGCTACAAccagagaaaaaaatataaaaaatctgCATGTAttactgtagctagctacatgatAACTTTATTTATTCCACGTTTATTTCCTAGCCTAGTTAAAAAcgtattttatttaatatgtatttaaatattgtttgttttattttcgtAAAATAGCTAGCTATGCTGTTGCTACCGAGGCTAGCTAGTTAGCAGCGGTGCTAATAGATTAAAATGATGCAGAACATGTTTCGGACCGGGTTTCTGGTTCGGGCCACACACACCCTGCTCACTTGGGTTATAACCCTCATACTGTTCCTGCACAACACCGatTTGCGGAAGTGTGAGGAGCGAGGCGAGCTGTTGCTGCCAGTTCTATTCTTCCTCCTGGTCGTGCTGTCGGTGCTCTTATACTTTGCTGTTTCTTTAATGGACCCTGGCTTCGTTCTCGCTGACAGTGTCAAGGGTTCAAATGAGGAAATGGAGTCGATGATTCCTCAGTCTTCGACCCCTCGGCTGCGGCGCTGTGGACATTGCCTGCTGCAGCAGCAGCCAATGAGAGCGAAGCACTGTCAGACGTGTAAACACTGCGTTCGTCGCTTCGACCACCACTGCCCCTGGATCGAGAACTGCGTGGGAGAGAGGAACCACCGCTGGTTCATCGTCTACCTGCTGGTGCAGCTGCTCGCTCTTCTGTGGGCGCTTCACATCGCCCTGTCTGGCATCTCACCCAGCCTCACATGGGCGCTGTGGTTCAGAGTGAACGGGTTCCTGTTGGCGGCGCTGGCTGTCGTCGGTGTCTTCTCTGTGGTGGCGGCGATGCTGCTGGGCATCCACCTTTACCTGGTCTCCATCAACTGCACCACCTGGGAGTTCATGTCACGTCACAGGATCGCGTACCTGAAGAACTGCGGCGACGAGGAGAACCCGTTTGACCGCGGAGTCTTCTGCAACATGTGGGATTTCTTCTGCATCTGCAGGACGGTGGCGTGGGAGCAAACGTACGACAGAAACACCCCAAATTCTGTCTGAACCTCCAACCAGACGGCACGTCTCCGGGAAAGAAAATCATTTTTGAACCTCGACAGCAGAGATTTGAATTATTTTATGTTACCTTTTAGGTCGAAGTTTACAACTGAAGTGGACCACGAAATGTTTCCTAACTACCTGCAAACGTTGTTGGTTGTTAGAGCAGACGTGCAGTAAgcttattatatatatagtttaccaacttttccaacatttttcatACAGATAACAAAACATGATACTTTGATTTGCTGGCTTTTGactacaaacacattttaaaaacacattggcCTGTTTTTTGGTCAGACAACTTTAGTcctgactgaaatatctcaaaaactattggatggattgtcattaaataaattaacattTATGTTTCTTAGAGGATAAATCCTAATGCCTTTGGTGTAGGTATGGCTGTCCCGAATCAGGATCTTTAGGGTCTTTTTTGAAATTGATGCatcttatatataatatattattataattaaagcTTAATCCGACAAAAGAGTAAGTAAGCAAGGCTACAAATCTGACATTCTGCGCTTTTTATTGgttcttcacagtttgatactTGACTCTTTTCTGCCTGCAGTATGTCTAGAATATCACTGGGATTAGTACACATGAGATTACAAGACCCAACACTAAAGGTTATTAAATTTAATTCCTCAGGTCTAGTCACCACTTTCCTTTCTGTAAATGTTTGCGTTGTTGCCTCGTGAGAGTGGTGACCTCCACATCTGAACACTAATCGCCTTTACGTCTGGTGCGATTTATGTCTTGTGCCTTTGATTTAATGTAACTGTTTGTatattgatgattattttgaCTATTACTATGAGATAATCTTCTCACCGAGAGGCAAATAttttacaacctttttttttttttactgtatttgttCGGTTTGTATTTATTGACAATAAAAGTACATTAAAACACTGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K18932 ZDHHC; palmitoyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639406.1 lncRNA upstream 403972 33876175 ~ 33877007 (+) True LOC120560041
XR_005639570.1 lncRNA upstream 508445 33769844 ~ 33772534 (+) True LOC120561187
TU89072 lncRNA upstream 525024 33755569 ~ 33755955 (+) True G66571
TU89069 lncRNA upstream 555197 33725520 ~ 33725782 (+) True G66568
TU89049 lncRNA upstream 677392 33601637 ~ 33603587 (+) False antxr2a
TU89217 lncRNA downstream 141289 34430942 ~ 34439928 (+) True G66689
TU89223 lncRNA downstream 166837 34456490 ~ 34456749 (+) True G66692
TU89226 lncRNA downstream 196885 34486538 ~ 34486751 (+) True G66695
TU89323 lncRNA downstream 218489 34508142 ~ 34509613 (+) True G66769
TU89399 lncRNA downstream 525936 34815589 ~ 34816327 (+) True G66830
XM_039803801.1 mRNA upstream 724 34272947 ~ 34280255 (+) True slc25a25a
XM_039803019.1 mRNA upstream 93359 34170475 ~ 34187620 (+) True cnot6l
XM_039804184.1 mRNA upstream 490169 33779007 ~ 33790810 (+) False paqr3a
XM_039804183.1 mRNA upstream 490169 33779009 ~ 33790810 (+) False paqr3a
XM_039804185.1 mRNA upstream 490169 33779271 ~ 33790810 (+) True paqr3a
XM_039803312.1 mRNA downstream 20447 34310100 ~ 34314260 (+) True LOC120560630
XM_039803311.1 mRNA downstream 26653 34316306 ~ 34330925 (+) True LOC120560629
XM_039803372.1 mRNA downstream 42189 34331842 ~ 34344199 (+) True gle1
XM_039802754.1 mRNA downstream 62058 34351711 ~ 34421494 (+) True si:ch211-251j10.3
XM_039802753.1 mRNA downstream 74829 34364482 ~ 34421494 (+) False si:ch211-251j10.3
TU89079 other upstream 504581 33775925 ~ 33776398 (+) True G66578
XR_005639474.1 other upstream 1168163 33077246 ~ 33112816 (+) False cds1
unassigned_transcript_266 other upstream 1709220 32571688 ~ 32571759 (+) True trnap-ugg
TU88651 other upstream 1910995 32364860 ~ 32369984 (+) True G66263
TU88642 other upstream 1950989 32322507 ~ 32329990 (+) True G66256
XR_005639528.1 other downstream 224357 34514010 ~ 34527405 (+) False cfap157
TU89395 other downstream 476293 34765946 ~ 34773700 (+) False LOC120561070
TU89401 other downstream 571846 34861499 ~ 34864266 (+) False G66832
TU89402 other downstream 571846 34861499 ~ 34864266 (+) False G66832
TU89404 other downstream 571846 34861499 ~ 34864266 (+) False G66832

Expression Profile