RNA id: XM_039803480.1


Basic Information

Item Value
RNA id XM_039803480.1
length 7894
RNA type mRNA
GC content 0.52
exon number 14
gene id rusc2
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 32854714 ~ 32901547 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAGCCCATCCTGCGATGCGCCGCCGCTGTCGCCCTGCAGTCTCACAGACAACAATATTCCCACACGGCAAGGACTAGCTGCCCACCAGCCTGGTTTATCTACAGCTTCTCATGCTTTGTATCTAAAATAGACGTACTGCCGACCATCTGCGGCAAGGCAATCCGCACACTTCCCACCAAAGCAAACCCGGAGTCTCATGATGTGAAATGCACCGAAGAGATGTACCACTCTGACCACGGTGTTGACTTCCCCGACCTCTCCTTTCCAATCCCTGGCAGCCCTGCAGAGCTGGGCCCAGCAAACACAGAGTGAACCCAACCCTCAACAAATCACACATCTACCTTCCCCCTTCACCCACACAGGGCCTCCCTTCGCTCCAGTcccacccccctcctccttctGAACCATGGACAGCCCTCCTAAGCTGTCAGGCGAGACCCTGATCGTGCATCACATCCCCCTGGTGCACTGCCAGGTGTCTGGCGGGCGGAAGGGTGACTGCGGGGTCTCGTTGAAGAGGAGCAACCCGTTTATCCCACCGGAGAACCTGGGCTTGAGTCGAACCACTTCCCTTCCCGAGAGAGATGTTCTTCAGAGAGAGGCACTGCTCTACAGCAGCCTGATCCAGACCTCCAGTGGCTCCTGGGACTCCCGCAAAgggggaaaagagagaaaagttgGCGGGAGAGGAGGCAGCACCGCAAGTGACGATTCATCGTTTACCTCGAGCAATTCAGAGGACCAGCTGATCACGGCTCACACTTTACCCAGAGCCAAACCGAGGAACAGGAATCCGTTGCGTCATAATCCATTCCTGCTGAATACCGAAGAcgaggatgaagaagaagaggatgGTGATAACCTCAGTGGTTACTTTGAAGactcctcttttcacctccACAGTGACACTAACTCTGTCCACGATGACGGGATGACTTCTTTCCACTTACACGGCATTGGCTTTGCTTCTGAGCCCTTTATGTTGCACAGGTCAGTGGGTGGAAGCAGTAGGGAGTCCCTAAGGGCAGTAGCCTCGGATTTCTCCACCCACCTGGAGGACCTGGACATTCTGGGACTGGACAGCCAGCTGCGCCACGGCAGCAGCGGCTCCAACATGTCCATGGATTGTGGAGAGCAAGACTGGGGCGATTACGATGGAGAAGATAAGGATGATCCCATGAAGTGTGGGCGAagctcctccagctcctccacgCAGCACTGCTCCTGCTGTGCACTCTCCCAGAACTACCCTCAGCACTTCCCTGAAGCCTTCACAGAGCCTTTCTCAGAATGCCAGCAAGGCTACGGCAGCGACTCCTCTTGCAACAGCTCGGACGGCGTGCTCGTGAACTTCAGCGCCATTTACAACAAGTTGAACAACAGTATTCCGGAGAAGCCGCAGGTCTCTGGGCACACCAATCTCAACAGCTCTACCGACCACTCCCGCACCTCGTCTGTTTCTGATCCACCAGGAAACAAGCGAGACTCGACTGGAGGGGCTTTCTATTTGGACCTTCACACATCCCCAACTGAAGCTCCCTTATCACAGCAGCAACCCCCCTGCCTGGGCGGCACCTTCCCTCTCATCCGTGAATCGCACCtgtccacctcctccacctgttccTGCGCCGTGGAGCACCAGGGGGCTCTTGACCTCGACGCCAACTGCAACTCCTACCACCCTCCACATTCTGGATCGTCCGGAGACCTCGCTTCCTGTCTGCAGAGTCAGGCACGCCTGGTTGTCGCCACCCAGAACTACTACAAGTTGGTCACCTGCGACCTGTCGTCCCAGTCGTCCCCAAGTCCCGCAGGCTCCTCGGTCAACAGCTGCTCCGATGAGCACAGCAAAGGCAGCCCCACTCCGACCCAGCCCAACGAGTACTTTCTGTTCAGGCAGAGAGCTGATGAGCTGGgtgtggaagaagaagaagatgaagaagatgaagagTCATCTAGGcgagatgatgatgatgatgatgaggatgacgaggaggagaagaagaagaatcagCAGGCAGCTGGTGGAGCTGAAGCTGCTCCTGCCGTGATTGAAGGCCAGGTGTACGTCAACATCTCCCCCCCTGTGGTTGGCCAGGGTGTTATCGGAGCCTCAGCCTCAGGAAGCCGCCCCCGTTCTCGCAGCTACGACCGCAACCTGGACAAGTCTGCGTCCCCTCGGCTCGGCTCTCTGGAGCGTATGTTGAGCTGCCCGGTCCGGCTCAGCGAGGGCGCCGCCCCGACCCCGACCGCGCCTCCTCCTCCACGAGTCACCTCCTTCGCAGAGATCGCGAGAAGCAAGCGGAAGAATGGAGGCTCGCCGTCGCTGAAGGCAGCTGCAGACCCTTTCTCCTCCACTTACTCCACCCACTCCCACTCCTCTGTGGATTTCTCTCCGATCCTAGAGCAGCATGTGGAGGTTGACAGTCACAGCCTGTCACCTGTACCCTTTACCAGATGTTACAGTCAAGGCAGCACTGAGCGACACctggagggggagagggagaccAGGGCCAAGGCTGAAGGTGGCCTCTCAAGTTCCTCAGACAGCCGCCCGGTGGTGGTCCGCTACAGTAAAGACCAGCGGCCCACCACCCTCCCCATCCAGCCCTTCACCTTCCACCACCAGTTCGCCTCCAAACCCCCACAGCCCAAGCCTCTGCTGCCCCTGCTCACAGGCTACGTCTCTGGGATGCAGGCCCGCTCCagctctggttctggttctggatctggttctggctctggctctggagGTCCGGTGGGGGAGGAAGATGCAGCTGAAAATGTGTACAGGTACCAGGGGACTGCAGCAGCCCCTCCACCTGGATCAGTTCGACCCTCACCTCTTGGAAGCTACTCCCCCGTGCGTCTCCAGGGGGCACCCAGCTCTGGGACCTGCTCCACCTGCACCCCAAGCCCTCAGCCGCAACACAGCCTCTCCTGCCCGCTTTCAGCTGGCCCCGGCCCCCTGCACACCTCACCGACAGGAAAGCAGGGAGGGGGTTCAGTGGCGTTACCGTCTACCCCTCCACCTCCATCCCTGGGGGTGAAGAGAGGGATGGTGCCGCCAGTGCTGCCAGCTGTGCAGGGACACTGTTTCCATCATGGAGCTCTGCCTAGTTTACCAGCACTCAACAGTGACATGCTGAGCCCGCTGGGCTGTCTGGATTCTGGAAAGCATGTGGAGGGAAGCCAAGGACCCGGAGCCAGGACACATAATGCACACCACCTCTCTCCACAGGCTCTCAAATGGAGGGAGTACCGTCGTCGAAACCCTCTGGGATTGGAGAGGGGCCACTCTTCTGCAGGATCAGGCCCCCTATCTGCAGGGGGCCAATCAACTAAGCTGCAGCAGATCTACAGCGACTTCCTGCCGGACTACTTCTCTCTGACCGAGAAGCCTCCGGAGGAGTTTTGCCTCTCCCCAGACGCATCAacttcctcctccacctgcTCTTCCTCACAGTCCCACATCTCAGTGGACCTGACGCAGAAGAGAGGTTTGGTGAAAGCCGTGAACACAGCAGTGGATCTGATCGTGGCACACTTCGGCACCAGTCGAGACCCAGATGTAAAGGCTAAGCTGGGGAACAGCTGGGTGAGTCCCAACGTGGGTCACCTCATCCTGAAGTACCTTTGCCCGGCTCTGCATGAGGTGCTGCAGGACGGCCTGAAGGCCTACGTACTGGACCTGATCATCGGACAGCGGCGTTGTCAGCCCTGGAGCCTGGTGGAGGCCTCCACACAGCTGGGGCCGTCTACACGTGTACTTCACAGCCTGTTCTCAAAGGTGAGCCAGTACTCTGAGCTCACAAGCCACAGCATGAGACTCAACGCCTTCATCTTTGGCCTACTCAACCTAAAATCTTTGGAATTCTGGTTCAATCACCTCTACACACATGAAGATATTATAGCAGCCCATTACAACCCGTGGGGTTTCCTCCCCCTGTCACAGGGGCCGTGCCAGCCGCTCTTTGAGgagctcctcctcctgctgcagcCACTGTCGCTCCTCCCGTTTGACCTGGACCTGCTGTTTGAACCACATCTTCTCCAAAAGGGCCAGGAGCATCTCCGTCGCAAGGAGCAGCTGTGCTCTGCCGGCCAGAGTGTCGACCAATCAACTCGTTCCACCTTCCAGCTCATGAGAGGATGGAGCACCACTGTAAGCGAGATGGTCAGAGACTCAAGTGCAGAGGCGAAGAAAGAGAGGGCGGGGCTGAGACGAGAGGGAACATGGCCGAGGATTGAAGGGGTCGGATCGAGACGAGAGGGAGCAGGAGCGAAACCAAGGTTAAGGAGTGAGGGGGCAACAACTGACAGCATGACAGCCAGGTCTGTTAGCAGACCAGACCAGATGGAAGTAGGGTTTGCCAATCTCTGGAAGGAGAGGGGGATGAGTGGACAGAGAATGAAAGGCGTAGGACAAGAGAGCCAAGGAGAAGGTGAGGACGGACAGGAAAAGGACAGGAGTAGAGAAAAAGGGAAGGATATGGCGGAGGAGGGCCGTCAGCGGCAAGAGAGACAGGCGGGTTGGTGGTACCAGCTCATGCAGTCCTCCCAGGTTTACATCGACCAATCCACAGAGGGGTCAAAGTTTGTTAAGACTGAGAAAAGGAAGAAGTCGTCAGAAAGAAGACAGAACCAGCTACCTCCCACCAGAGAAGGAGTGGTGGAGGGAGCCGAGTCAAGCCAAGAAGGGGAGGGGTATAGAAACAGGAAAAGCAGCAATAGCTCTAGCGGGGAGTCAGCTGGATCCAGAGGAAGGCCTTCATGGATGGGCAGCCCGCCAGACTCCGTTCTCAACcaggagaaagagacaaaacCTATGGAGGCTACAGGGACTGGAGCTCAAGCTGCAGCCCCAGAGGAGAGCCCCACACAGGGACAGAGTCTGCGATGGGGCAGGCTCTTTGGTTCTAGTGTTGGTTCTCCTTCGAGGGTGGAGGCAGCTGATCAGAAAGCAAAAGCTCAAAAGACCAGgCCACCATCAGGTTGGCTTTCTCTGGATAGCTCTGTTCTTGACTTTGTAGCTCTGACTATTGGAGCGGGGAGTGGGAAGAAGGCAGAGCCTCCAGCCACACCCACTCAGACCCAAACCACACCTCCACCAACCTCAAGCCAACCAACTGAAGCCAGACAACAGTCTCCATGTGAAGTCCGAGCTTTGTGCCACCACATAGCCACCGAACCAGGCCAGCTGAGCTTCAACAAGGGTGATATCCTGCTGGTCCTGAGCAAGGCTGATCCAGACTGGCTGCTGTGCTCCCTGGGCTCCACCCAGGGCTTGGTTCCCATCATCTACGTTACCCTCAATAGCATGGAGGACAGCCGAAATACCACTGGACTATGAGCTAATGCTGCCCCAAAAGAAATTAATGCAAGATGAAGGCAAACCGCTTTGGAGACGGAGGGTATCCCTTGCCACACAACTACTGAAACAAAAACCTGTTTTTGAGATAACTGTACATtggggatgggaaaaaaaaacattgtaaattTGAAGATAATGAAGATGATGTACAGACACATGCAAATGGAAGCATGCAGGCTCAAACACAAACTTAACATCTACTTCAACTGTACATCCAGACAAGTATGCATGCATACATTCAAAAACCAAAAGACCAGACAGGAAACCCAAAGACACTCCCAACACACGCATCTCTCTCTGCGTGAAGCTCTGCTACTAGTTTAACTATGTGACTGTCCAGTCTCTATATCATCCATCTCTACTAGCGACAAAAAAGGAGGGGCTACTTAAAGTTGGTAAACTTcataatatgataataatataacatgCCAAGCTGCACTTTGCTGTACTGTCTATACCTTCACCTAGCTGTTCCACACTCTAGACACAGTGCTCAGACGAACGCCGGGGGGCTGTTTGATGTCCTGTTGCTTACTTGGTGCCGATTTGATCTTTTTGTGTAGAAACCAGTGAATCCTTGCTTTGTTGGTTAGATTTAATGTGGTTGATGTAAAAgcgaaaacaaaaaaaaatgttttgatccACTTGGGCTCCAGTTTTTCAGGATTTAGCATATAAATATTAGGACAGTAGAAAACCACAAGAGTTTGTTTAGATGGCTGTTCAACCCAAGAGAAAAGAAGGCAAAAAGGACGAGTTTAAATCTGTTTCCATTCTCCGTCTATCTTATTTGATCACTGCTTGTCAAAGCCTAGTATATGGAGACAAAGGGATGGATCGACTGACAAGCAAGTTGCCTTTTTTATCTTCAATTTCTTTTCTCACATTACCCGCCACAGCTGGCATGAATCAATGGCTGACATTGTTTAAGTGCATGCAACCTTACAAAAATGTGGTCCTTTTTCCTACAATCCTGTTTCACCTGCGTTCCGGCTGCATCCTGCAtctcagtccccccccccccaatctcTCATCAAAGGACACTTCACGGATTCTGAAGAGGACATATTCAAGCGAGCGGCTGCAGTCTGAGCTGTACACATGCATTTGATCTAATGCTACATTCTGTAAATGCATAATATGACTTACACATGTGGTGAgttctatttatttatgtatttagttCAATTAGCAGAGGGAAGCATCTAAATGGACCGTTGCCGAAAAAACAGGGAAGGATGTCCAATGAAAGCAAAGCATAGCTGAGGAGATGTATGGAggcctttttttgtgtgttggggATCCAGCCTGGAACATGCTAATTAGTTATATGCATTTAGAGAGTAAATTATCTTATTTATGCCTTAAAGCGCTTGAGGAAACCAAGGGAGAATTGCCCTGTTGGACACTTCAAGGCTAGTGACCTAATATTTTCCcgacattatattttgtatatatgcTGTGACGTGTCAAACTTGACGTTTCCCCAGATTTATGTCTACAGAGATTCTTGTTGACTTCAAAGAAAAGTATAGAGATGTTACAGAGGTGATATTTTTTGATGTTTAAAGGGAAACCCCAACACATTTTGTGACGGGGGGCTCTGTGGGCATTTCTGTGTTAGTATGTGCAGTACATGCTACCTTTCGATGCCCAGATGTAATGTGGCCTTAGGATCAAAATGATTTGACGAAGAACTCAAATTACGGCTAAATACAGAATACCTGGATAGATGTTGAGTGTATACAGATGCACAATCCAAATATTTCACATTATAAAATGGTTAAATCACtgtacatttattaaataaatgaatgcttGTGTAGTTTTTGAAAAACGTACATAGGATATAATTTTACcgtttcaattttctttttctttgcattgttgtacagtttttacagcatttaatttcagcattcactgaactgtaaatatatttaaatcctttaattattaatttccaCCATAGAGCTACATGTACGAATGTTATTACTGATTTAATAATGCATTTCATGATAAATACAGGAAGCAAGTATAAGCTTTAGTTTCAGTGCTAACAACCATAATGAAAGTTGGCCTCGGTAGTGGAAGGTGGGACGAGTGGTATCATTTTGGGTCCTCCAGGTAGGCAGCAGTTTGCTGTTCATTGACATCCTGTTCAGAGTTCACATGGggcagacaaaaacaaacatagtAGTGATAAAACCAGAGACATGGAGGCGCAGGGGCAAGAGGCAAAGACCGATTCTCTTTTCATTTGGCATTTCATTAGCTGAAATGTGTTTTCAAATGctacacagagagaaagaaagaagccgCGAGGCCTCATTTCCTACTCTCTTGTCAGTTTGTAtctgctttctctctccctgGCTGCCTCCTCGGCCTGTAAATACCTTCAGCATCAGTGACactgctcttctctctgtgtccaGGCTATATGACGTGTACGTATGAAATTATCAAACTACTATGGATGTTAAATAACAAAGTGCTCATGTGATCACAGACTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88756 lncRNA upstream 116339 32720755 ~ 32738375 (+) True G66340
XR_005639506.1 lncRNA upstream 160627 32685340 ~ 32694087 (+) True LOC120560708
TU88743 lncRNA upstream 161497 32685269 ~ 32693217 (+) False LOC120560708
TU88731 lncRNA upstream 240806 32612999 ~ 32613908 (+) True G66319
TU88734 lncRNA upstream 241776 32609909 ~ 32612938 (+) False slc39a14
TU88897 lncRNA downstream 169990 33071537 ~ 33072722 (+) True G66439
TU88898 lncRNA downstream 170773 33072320 ~ 33072722 (+) False G66439
TU88984 lncRNA downstream 226155 33127702 ~ 33127902 (+) True G66496
TU88985 lncRNA downstream 234243 33135790 ~ 33136017 (+) True G66497
TU88986 lncRNA downstream 238321 33139868 ~ 33140093 (+) True G66498
XM_039803505.1 mRNA upstream 195384 32636836 ~ 32659330 (+) True LOC120560720
XM_039802540.1 mRNA upstream 228025 32614892 ~ 32626689 (+) True ascc2
XM_039802543.1 mRNA upstream 243889 32572200 ~ 32610825 (+) True slc39a14
XM_039804502.1 mRNA downstream 55682 32957229 ~ 33070510 (+) False wdfy3
XM_039804498.1 mRNA downstream 62652 32964199 ~ 33070510 (+) True wdfy3
XM_039804501.1 mRNA downstream 62652 32964199 ~ 33070510 (+) False wdfy3
XM_039804500.1 mRNA downstream 62652 32964199 ~ 33070510 (+) False wdfy3
XM_039804504.1 mRNA downstream 62652 32964199 ~ 33070510 (+) False wdfy3
unassigned_transcript_266 other upstream 282955 32571688 ~ 32571759 (+) True trnap-ugg
TU88651 other upstream 484730 32364860 ~ 32369984 (+) True G66263
TU88642 other upstream 524724 32322507 ~ 32329990 (+) True G66256
TU88617 other upstream 717748 32126293 ~ 32136966 (+) True G66231
XR_005639593.1 other upstream 1044435 31809632 ~ 31810279 (+) False dmrt3a
XR_005639474.1 other downstream 175699 33077246 ~ 33112816 (+) False cds1
TU89079 other downstream 874378 33775925 ~ 33776398 (+) True G66578
XR_005639528.1 other downstream 1612463 34514010 ~ 34527405 (+) False cfap157
TU89395 other downstream 1864399 34765946 ~ 34773700 (+) False LOC120561070
TU89401 other downstream 1959952 34861499 ~ 34864266 (+) False G66832

Expression Profile