RNA id: XM_039803511.1


Basic Information

Item Value
RNA id XM_039803511.1
length 2911
RNA type mRNA
GC content 0.46
exon number 14
gene id LOC120560723
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 21751888 ~ 21762175 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCTGACAGCTTGACATTGGCCGATGAAGAGCGGAGGAATACACAGAAAAAATCACCTGCATATAAGCATTCATCTGCCGCTAAATACTATCATCCTGTCTCCAGTACCGCAGGTGTCAATGAGGTATTTAGAGCTTTTCCTGATGATCCCTGCATCCCCTCCTTTACCCCGGGGTGGAGAGATAAGGAGGACAGAGAAACTCCTGAAAATGGGAAAAGTATGGAGCTACAGGATGTCACTGATAGACAAACTTCCAGCCAAGACAACAACTGCAGAACAAGCGGTCTGTTCATATCCAATCAAAGACCACACACCAGCTTatcagacagaaacacaaatcAAACACTTGCATCAGATGGTGCAACATGCTCGGTTAAAGAATCCACATCGTGCTGGAGCAATGTGGAGAGCATGGTGTTTGGCACCGGGAGTAACTTGATACTGAGTTATAAAACAGCTGGAGCTCAGCCAGAAAGAGACATATCAGGACATCAGATGGAGCTCAGAAAAGTAAACGTTGAGGGGAAGGTGGGAACAAAGATGAAAGTTGCGAAAGAGGAACTAGAGGATGCTAGGATGGgcgaaaggaaaggaaagaaaaatgaaGAACCAGAATCTAGTTCAGCTTTTGCATTGTATGCAAAGAATAACATGAGCAACAGTGAGCCAGAGAAGACACAGAAACGAATGAAAAAGACTTCAAACATCAGCTGTCATTTGAAAACACGACCAACTTTGACTGTATATAAGCGATACCAGCTTTGTGTGGATCAATTGCATCACCTCAGAGTAAGACAAAGACAATATACCGAACCGGGATGCTTCATAGATTCCCCtgcaaaagacagaaagacgtCTGAAGAAATTGCACCACAAAATCCTGAGATTGAAAAACGTCTAAATAAGGCAGGAAGCAAAATTGTTACAGCTGCAGAAATCACAAAGGAGAGGAGTTCAGGTGTCATTAATAAAAACCAGGACAGATCTCAATACAATAGAAGTAGGGCAACACTTACTGAACATGGACAGCACAAACATTGTGACAGTTTGACTGTGAAGGAAACACCTGCAGCCAGTAGACCTGTTTGTCAGAGAAACAAAATTACCACCAACACACATTTGAGTCTTAATAGCAACACATGTGGTGCATTAATAAAAGCAACTGCAGGAGTCATAACCTCAATTGATGAGGTTATTAACACGCATATGGAGCAACTGGGGAATTCCCCTGGCAATAATGGTACCATTGTGGAGGAGAATGCTGCACTCACCACTAACCCAGGTTTGTTTTCAGAGAGAATTGAATGTAATCCAGACGTCAAGGGTTGTCAGAGAAGTGTCAAAGGTCAAAAGACAAAAGCTGGGAGACAAGGAGCCTCACTGAGACTCTGTGAAAAGTCAAGTGTCTCCCTGTCTTGTCCACCCAATAAAGAAATATTGCAAAGACCTCCGTCATCAggagtaaacaaacacacaaaaagtcaCACACCAGAGGACAAAGTGAAACCTACTTCAGCCTGTAGTCATACACACAAATGTCTGCCatctacagagacacacacacatcttcatgATGACCCCAGACCACCATTACCAGCCTCGGGTGCATGTCCATGTAAACAAACTGGCAAATACAGCCCAGCAGGTGTCCCTATTTGTGACCTCTGGTTGTCTCTGCCTGATGAGGTGTGGCTGTCCATCCTGTCTCTGCTGCCTCACAGTGATCTGTGCAGAGTGCTGCAGGTCTGCAACCGCCTGCACACACTGGCCACTGATCACTCACTCTGGAGAAATCTGAGAATTGAAAACTCCAACCTAACAGACTGGTGGTTACTCTGTGTGGGCAGACGTCATCCTCGCAGTCTGTGTCTGTACAGCTGCAGTGGCCTGTCTCTCACCTCTTGTGGGCTGGAGATGTTTTTCACTCTGTGTAGAAACTTTCTGAAGGAACTCAAGGTCACAAGTTGCACTGGTCCTTGTCTCCATGGGGACCAGATgttgcctctgattggtcagctgtgtCATCATGTGACCAGTGTGGACGTGAGCTGGAGTGGAGCAACAGACACAGGAGTGAAAGCTCTGAGTGACTGCTGCCCAGGGTTGCGGCTAAAATCTGTTGTCCTGAATGGCTGTCATGTCACTGATGACCCACTGATGAAACTCGTCATGAGGCACAAAGAAACTCTGTGCAGATTGGAGGTCTTTGGCTGTCAGTTCCTTACTCCATCCTGTCTACAGACAGTATATGAGATGTGTCCTGGCCTTCAGCATCTTAACATCGGACAGGTGCCAAAGGTcaacacacacagtcttacagtgatgacatcacagctcaAATGCCTCATTTCACTAAATCTCACTGGACTACATGTGATTACTGATGCCGCAGTGGACACTTTGCTTCAGAACTGTGTCGAAATTCAGAGTTTGACCTTCAGTTCCTGCCCTGGAGTCACTGACCTGACACTGCACAGCATCCGCAAATACACACCTTGTATCAGatcTCTGGACGTGAGTGGCTGTAAGGCAGTAACAGATGCAGGAGTTCAATCTCTATCTCTGGGATGTAGAAGACTTCAGCAACTAGATCTCAGCTCCACTGGCACAGGAAACAGAGGGGTTACTCTGCTGGCAAATTACTGCAGCAGATACCTCCGTactgtcaaactcagtttctgCCACATCACCTTAGAGAATATACTGAAGCTCTGCAGATGCTGCAAGaggtTGAAGGTGCTGCATCTCTACGGCTGTGCCCATCTCCCCGCTGAGAGAGAGATCCGAGAGGTTAATGCTACTGTTAAAGTTTACCCTCTGTCctgactcacacacaaacatctgcaCATAACtggacagatacacacaacataTTGAAGTGCAAAATGTAACTATGAGTAAAAGTATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639467.1 lncRNA upstream 131944 21608823 ~ 21620711 (+) True LOC120560273
TU85279 lncRNA upstream 134053 21616223 ~ 21618602 (+) True G63641
TU85261 lncRNA upstream 265617 21486769 ~ 21487038 (+) True G63628
TU85260 lncRNA upstream 267989 21479780 ~ 21484666 (+) True G63627
TU85205 lncRNA upstream 405138 21346367 ~ 21347517 (+) True G63576
TU85373 lncRNA downstream 82657 21844832 ~ 21845138 (+) True G63714
TU85374 lncRNA downstream 113270 21875445 ~ 21875687 (+) True G63715
TU85491 lncRNA downstream 369709 22131884 ~ 22150124 (+) True G63792
TU85584 lncRNA downstream 1141860 22904035 ~ 22905966 (+) True G63872
TU85631 lncRNA downstream 1225006 22987181 ~ 22988040 (+) True G63914
XM_039803506.1 mRNA upstream 1071 21692150 ~ 21751584 (+) True frmd3
XM_039803507.1 mRNA upstream 1071 21692150 ~ 21751584 (+) False frmd3
XM_039803508.1 mRNA upstream 1071 21692150 ~ 21751584 (+) False frmd3
XM_039803510.1 mRNA upstream 1071 21692150 ~ 21751584 (+) False frmd3
XM_039802947.1 mRNA upstream 73591 21672207 ~ 21679064 (+) False LOC120560432
XM_039802127.1 mRNA downstream 3451 21765626 ~ 21783917 (+) False rasef
XM_039802126.1 mRNA downstream 3452 21765627 ~ 21783917 (+) True rasef
XM_039802128.1 mRNA downstream 3452 21765627 ~ 21783917 (+) False rasef
XM_039803170.1 mRNA downstream 117955 21880130 ~ 21892139 (+) False LOC120560549
XM_039803171.1 mRNA downstream 117955 21880130 ~ 21892139 (+) False LOC120560549
XR_005639510.1 other upstream 153856 21588876 ~ 21598799 (+) False LOC120560787
TU85087 other upstream 1074739 20676417 ~ 20677916 (+) True G63480
XR_005639482.1 other upstream 1263817 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other upstream 1263817 20477812 ~ 20488838 (+) False wdr31
TU84360 other upstream 2303705 19434907 ~ 19448950 (+) False rasl10a
TU85622 other downstream 1167724 22929899 ~ 22930205 (+) True G63905
TU85875 other downstream 1930487 23692662 ~ 23693291 (+) True G64108
XR_005639471.1 other downstream 3061543 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 3061544 24823719 ~ 24834620 (+) False cdc14b
TU86491 other downstream 3922797 25684972 ~ 25696570 (+) False LOC120561182

Expression Profile