RNA id: XM_039803520.1


Basic Information

Item Value
RNA id XM_039803520.1
length 3796
RNA type mRNA
GC content 0.45
exon number 13
gene id LOC120560725
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18365745 ~ 18382595 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATCGTCCAcccagagggagagggagaggggaggggagtgACTACTGATGCTCCAGTAATCTGCGCTGTGTGAGTCAGGGCTGTGGAGAGCAaagcagaaacagcagcagcgCGAGACACGTTTCCCTCTCACGAGCGTCAACAACACAGAAGAGCAGAATGAGAAAGCTGAGCGGCAAGAGGAGGAAGTGAGCAAGACATATAGAAAGCAAGAGGGACATTAGGAGCGAGAGAGGCAAAAAGACAGATCGACAGCTTCTTTTTGAGAGTCTCCTTTTTGAAGTAGAAAGGACCATGGAAGATCACTGAACCTGATCGACAGCAGTGACAATCTAACGAATTCAGTAGAAGAGGAAGTTTACTAATTACATTTTGGAGGTGGCAGCAGGTTTACAATAAGACTCGACGTGGTGCAGGGATGTCCTGGTTGTCTCCGGTCCAGTGGGCCAAATGGACATGGTCAGCAGTGACTGGGGGTGCGGGGGACGAGGGGGAGCCCAGATCCAAGGATGGCAGAGAGGACAATTCAGACTCGGAAGGGACCTTTGAGACCCCAGAGGCAGAGTCACCAGGTGTTGTTAAGCTACTGAGCCAACTGGACAACTCCATCCACACAGTTCTTCCTGATGTTACAAACTTCTTTCTGGACAAAAACTCCAACCAGGATGTCGCCCCACTTTCATTACAAGAGGTTGATTCTCTAAACAACCTCACCGGCTCCTTACCTAATGAGCGCAGCTTTGGTTTGGACCAAAACCTCAACCTGACCCTCAGCAGCATATCCAGTCCTGGAGAGGGCCTCTCACCATCCAGCCCTCTGTCACAGCCTCAAGCCCTCAGGCCCCCATCTCTGTCCGTCCTCTCCCCACTAAACAAACCTGATCCTTTGGAGGTGGACGACGAGGCTCCAGTGACATCTGACTCCAGCCAAGACTCAAACTTGATCCCCAGTCATGACATTTGTGTGGATGCCGACTTGCTTAATGGCAACACGCAAAACACAAACCTGACCTGCGAGTCCAACGGCACAATTACCACGAACTCCTGTAAAATGAAGCAGAACCAGCCGATGCAAAAGGACTTCAGCGGACAGGATGACCATCATGGCGAACACGCCACAGATGAGGAGAAGTTGGCAAGCAGTGCTGGTATCAAACCAGACAAGGATCAAAGCGTTCCAGACTGCCATGTGTCATCAAAGCCAGAGGACTCAGACTGCTGCTCATTGCAGTTTGAGGACCCATGCAAGCTGAAGAACAAGTCGGAGGGAAGTGAAATGCAGAAAACAGGAAGTCAGGTCCTGGATTCCATCTGTATCAGTGAGGCAGAAAAACAGGCCGTTCTTACCCTCATTAGAGAGGAGATCATCACTAAAGAGACGGAAGCCAACGACTGGAAGAAGAAGTACGAGGACAGCAGACAACAAGTCAGTGAGATGAGGAAGATTGTTGCAGAATATGAGAAGACAATCGCTCAGATGATCGAGGACAAGCGGCGCAGCAACCAGAGTTCCCAGAAGGCTTTGCAGACTGTGACGACGGAGAAGGAAGCCGCCCTGGCTGACCTGAACTCCGTGGAGCGATCTCTCTCCGACGTGTTTCGGCGTTATGAAAATTTGAAGAGCACCCTGGAAGGCTTTAAGAAAAATGAGGAGGTGCTGAAGAAGTGTGCTCAGGAGTATCTGGCCAGAGTCAAGCAGGAGGAGCAGAGATACCAGACACTTAAACTCCATGCTGAGGAGAAACTAGACAAGGCCAATGAGGAGATCGCTCAGGTGCGTGCAAAGTTGAGCTCCGAGAACATGGCAATGGCCGCCAGTTTGAGGAAGGAGCAGATGAAGAACGAGTCTCTAGAACAAGCTCTGCAGCAGAaaaacaaacaaaccgagGACCTCACCAAGATCTGTGATGAGCTGATTGCCAAAATGGGAAAAATAGACTGAGAGCCCCTCCCTGTCAGTCAGCCACTACCGTCCCTCCGGTCCTGCCTTACAGCGACGCCCTGTGCATGCCCCCAGCCAAGAAGCAGCTCTCATACCCTCTGCCAGCCCTGCATCACAGAGACTGCTTATGTACAGATGTCTAAAGTAACTTCCTGTATACTACAATTGCACTACTCATGACCTGGATCAAGAAGGTTCTGTACATGCTAATAATTGTTTTAGTGGGAATCtgttttatgtactgtatgtggtcacgttgttttgtttgtgtttttgcccATTATATGAGGCCATCTGGAGCTCTTTCGCCCATTTTGCCAGCGAGCAACTACCTGCTTGTGACTCAACTTAAATTCTCCGCAGCTTAACAGCTAAATTCCCAGCAACACATCATCGACAGGATGACATCATGCAGGCGGGGTTTGTTGTAGAGCTACATTTAGGCATACAGTGTATTTTGATGGGCAAGGATTGTttaatattaaagcaattaattTTTTCTGTGAAGTAAACAAGGATTTTACTCTGAAAGAGCAAAGCTCAGGGGTTTTGTGTGGGGCAGAATGTGGTCAGGGTCAAAGTCAGGATGCACAAGAACTGGAGGAAAGGATTAAGCGTTGTTTGAGGATGTACATTAAAAGTCCTCGAAGGCCGTGGTTTCTTCAGAAGAGACACTGAAACCATAACGAGTCTGGACTACATGTCCGTGACACTAAAGCTGCAATTAATTCACAGCATTTGCTTTACCTGGATTCTGGACAATTCAAATAGTTGCAGAATGTTTATCATTAACAGAGAAGTATAGTAACCTGACAATCAGAGACTATCCTGTAAGTTATATAAACTTTGTGGCATTGTCTCGTCTGATCCACAAAGTCAGTTGAAGTGTAAAATGTGAAACGCTAAATCAACCACTTTACGTTAACTATCCTGTGTTCAGAATCCTGAACAACtggaaaacattaaaacatagaCATGACTATATTTTGGTTGAAGATATTTAAAACTATTATAAGATTAGCAAGTGCTGCAATATGTCAACaattattcttttttctttttttaaccatcACTGCACAGATTGAGTGACCACTAATCACATTTACCTCCTACCACGAAGGAAACAAAGTGTTTGACAGCTTTGTTAAAGGTAATGTCTGTTGCTTATGCGTGATGAAGATGTGAGCTAACATGCCTTTATTTACAGTTGTTCAGCACATAAATCTCTTTATTTgcatgattattttcatagctTTGTCTTTCTCACAATGCAGATTGTTTTCTTAAGACACCAGTAAAAATAGTTGTATAGTAATGCCTTAGGAGGCTGTGACTTAGTAACGGTAACACTTGTATCATTACTTGCCTTTTTCTGTTGTAGAAATGTTCTTTCCATTCAACAAAATAGGCCAAACGTCTCTGCCACATCGATGTTTATTGAAGGCTTAACACAAACTACTATTTGCCTCAATATAATACAGTAGGACATTTGCAAATCTGTGATTTAAATGAGGCAATATTTGTAGAAATTGAAGGAAGGCTGAAAATCTGACTAAACTTAGTTCAAATGGTTTTAATACTCAGTTCTATGGAGTCAGTCACTATTGAAAAAGTTTAATGTCTGATATCCATGTACAACACAAACCCACTTATGTGccacagtttatatatatatgccatTCTAATGTCACATTGCCTCTCGTTACTCAGCTGTGCTCAGCTTTGTCTTTGCTTcacaaaatattgttttgtcACTTTAGCCCCTTATTGTTTGTAATGAGGATTTCACTTGTGTTGAGGAGTGGGTGTTTGTACATTTGcctcaataaaaataaaaaaatataatttgttcTA

Function

GO: NA

KEGG:

id description
K14283 TACC3, maskin; transforming acidic coiled-coil-containing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83694 lncRNA upstream 44587 18320643 ~ 18321158 (+) True G62508
TU83688 lncRNA upstream 50968 18313211 ~ 18314777 (+) True G62502
TU83666 lncRNA upstream 68842 18293260 ~ 18296903 (+) False G62484
TU83667 lncRNA upstream 70439 18293260 ~ 18295306 (+) True G62484
TU83580 lncRNA upstream 236676 18128826 ~ 18129069 (+) False setbp1
TU83734 lncRNA downstream 58767 18441362 ~ 18474731 (+) False tpcn1
TU83749 lncRNA downstream 74903 18457498 ~ 18459249 (+) True G62540
TU83769 lncRNA downstream 115368 18497963 ~ 18498301 (+) True G62557
TU83771 lncRNA downstream 116035 18498630 ~ 18498972 (+) True G62558
TU83739 lncRNA downstream 117283 18499878 ~ 18500121 (+) True G62532
XM_039803104.1 mRNA upstream 8113 18345554 ~ 18357632 (+) False ddhd2
XM_039803105.1 mRNA upstream 8113 18345562 ~ 18357632 (+) False ddhd2
XM_039803107.1 mRNA upstream 8113 18345576 ~ 18357632 (+) False ddhd2
XM_039803103.1 mRNA upstream 8113 18345587 ~ 18357632 (+) False ddhd2
XM_039803106.1 mRNA upstream 8113 18345587 ~ 18357632 (+) False ddhd2
XM_039803603.1 mRNA downstream 354 18382949 ~ 18386253 (+) True si:ch211-113d22.2
XM_039803604.1 mRNA downstream 357 18382952 ~ 18386253 (+) False si:ch211-113d22.2
XM_039803605.1 mRNA downstream 6516 18389111 ~ 18400741 (+) True si:ch211-204d2.4
XM_039803606.1 mRNA downstream 6516 18389111 ~ 18400741 (+) False si:ch211-204d2.4
XM_039803607.1 mRNA downstream 6516 18389111 ~ 18400741 (+) False si:ch211-204d2.4
TU83701 other upstream 34515 18330705 ~ 18331230 (+) True G62513
XR_005639579.1 other upstream 356427 17998686 ~ 18009318 (+) False cmya5
TU83072 other upstream 1831596 16533329 ~ 16534149 (+) False LOC120560897
TU83070 other upstream 1889840 16468367 ~ 16475905 (+) False LOC120560890
XR_005639530.1 other upstream 1889848 16468323 ~ 16475897 (+) False LOC120560890
TU83742 other downstream 24792 18407387 ~ 18416006 (+) False tbx5b
TU83744 other downstream 33533 18416128 ~ 18419590 (+) False tbx5b
XR_005639481.1 other downstream 278562 18661157 ~ 18681161 (+) False acacb
TU84360 other downstream 1052312 19434907 ~ 19448950 (+) False rasl10a
XR_005639482.1 other downstream 2095217 20477812 ~ 20488838 (+) False wdr31

Expression Profile