RNA id: XM_039803521.1


Basic Information

Item Value
RNA id XM_039803521.1
length 7494
RNA type mRNA
GC content 0.45
exon number 28
gene id LOC120560726
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 31513308 ~ 31565163 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGGAGCGGAGAGGCGGGTGGTGGGAAGCCAGGAGGAAAAACATTAGCCCTCATTTCTTTTCACTTAAGAGGAGATTTCTTGTTTCTTTCCAGGACTGCAGCAGCTGGCGACTCGCAGCCCGGCCGCAGGACGCACCGCACAGAGCCAGGACGCACGACTGATATGATGGATAGATAGCAGGAAGAAGAGCAGGAAGAGAAGATGACATTCTGGACTGGCATGGACTGTTttaggaagaaagagagagAGCTGGAAAGGAAACTCCGCGCCAACGACCGCGAGTACAACCTCTCCTTTAAATATGCGACAAACGCCATCAAGACCTCGAAGTACAACCCCTTCACCTTCCTACCTCTTAACCTGTTCGAGCAGTTCCAAAGGATTGCTAATGCCTACTTCCTGTTTCTGCTGGTGCTCCAGGTGATTCCTCAGATCTCCTCTCTGTCGTGGTTCACCACAGTCGTGCCTCTGGTCCTCGTGCTGACAGTCACCGCTGCCAAAGATGCCACCGACGATATCAATCGCCACAGGAGCGACAATCAAGTCAACAACAGAAAAGTTCAAGTCCTGATTGACAGAAAACTGCGGAGCGAGAAATGGATGGATGTCCAGGTGGGAGACATCATCAGGCTGGAAAACAACCAGTTTGTCACCGCCGACCTCCTGTTGCTCTCCAGCAGTGAACCACTCAACTTGGTGTACATTGAGACAGCAGAACTGGATGGagAGACTAACCTGAAGGTGAGACAGGCCCTGACTGTGACAGGAGACCTGGGAGAAGATAGCGAAAAACTGGCAGACTTCAACGGCGAGGTACGCTGTGAACCCCCCAACAACCGCCTCGACCGCTTCACAGGAACGCTAACCTACGTCGGTCAGAAATACCCGCTGGACAACGAGAAGATCCTGCTGCGAGGCTGCACCCTGAGGAACACCGAGTGGTGCTTTGGACTCGTGCTGTTTGCAGGTCCAGAGACGAAGCTGATGCAGAACTCTGGGAAAACTACGTTTAAGAGGACCAGTATAGACCGACTGATGAATGTCCTAGTCCTTTGTATTTTTGGTTTCCTGGCCTTCATGTGCACCATCCTTGCAATAGGAAACTGCATCTGGGAAATGAACGAAGGCTCACAGTTCATGATCTTCCTGCCCAGACAAGACGGCAACAACGCTGCCTTCTCCGCCTTCCTCACGTTCTGGTCCTACGTCATCATCCTCAACACCGTGGTGCCCATCTCTCTCTATGTTAGTGTGGAGATCATTCGGCTGGGGAACAGCTTCTACATCGACTGGgacaggaaaatgtactttgcACGGTACGACACCCCCGCCGAGGCTCGCACCACCACGCTAAACGAGGAGCTCGGCCAGATCAAGTACATCTTCAGTGACAAAACAGGGACGCTCACCCAGAATATCATGACTTTCAACAAGTGCTCCATCAATGGCAAATCTTACGgggaTGTTTATGACTACACAGGTCAAAGACTAGAAATTACTGAGCATACAGAGACGGTGGACTTCTCCTTCAACCCGCTGGCCGACCCCCGCTTCATGTTCCACGACCACGCCCTGGTGGAGGCGGTGAAGCTGGAGGACCCAGAGGTGCACGCCTTCTTCAGACTGTTGGCCCTCTGCCACACCGTCATGGCCGAGGAGAAGAAAGAAGGTGAGCTTTTCTATCAGGCCCAGTCTCCAGATGAGGGAGCACTGGTAACAGCGGCCCGAAACTTTGGATTTGTCTTCCGCTCGCGCACACCAGACAGCGTTTCCATCGTGGAAATGGGGGAACAGCGCAGCTATGAACTCCTGGCCATCTTGGATTTCAACAACGTCCGCAAGAGAATGTCCGTCATAGTTCGGAGTCCAGAGGGGAAGCTCTGTCTCTACTGTAAAGGTGCAGACACAATCATCTATGAGAGGCTGCATCAGTCCTGCAGCAAGCTGATGGACGTCACTACAGAGCACCTTAATGAGTTTGCAGGGGAGGGCCTGCGGACTCTGGCGCTGGCCTATAAGAATCTGGATGAGGAGTATTTCAACCAGTGGAAACAGCGCCACCATGAGGCCAGCACCGAGCTTGACAACCAAGAGAGCAAACTGGACGAGCTGTACGAGGAGATAGAGAAGGATCTGCTGCTGCTTGGAGCAACAGCCATAGAAGACAAGTTACAAGACGGAGTACCTCAGACTATTGAGCAGTTGTCCAAAGCCAACATCAAAATCTGGGTTTTGACTGGTGACAAGCAAGAAACTGCAGAAAACATTGGGTACTCGTGCAACTTACTGCGGGAGGAGATGAACGACGTCTTTATCGTCTCGGGCAACTCACCTGAGGATGTCAGACAGGAACTCAGAAATGCACGGACCTCCATGAAACCAGTTGAGGATTCAATGTTTCTGCCAGAAAGGACTCTGGGTAAAGGTGTGAAAGTGATCGCAGACGAGTTGGTAAATGGAGAGTACGGCCTGGTCATCAACGGACACAGCCTGGCGTACGCCCTGGAGGGCAGCATGGAGCTGGAGTTCCTGAGGACGGCGTGTATGTGTAAAGCAGTGATCTGCTGCCGGGTCACTCCTCTGCAGAAGGCTCAGGTGGTCGAGCTGGTCAAGAAGTACAAGCAGGCGGTCACACTGGCCATAGGAGATGGAGCCAACGACGTCAGCATGATCAAAGCTGCTCATATAGGCGTGGGCATCTCAGGCCAGGAGGGCATGCAGGCTGTGCTGTCCAGCGACTACTCCTTCGCCCAGTTCCGCTTCCTGCAGCGCCTCCTGCTGGTGCACGGCCGCTGGTCCTACCTGCGCATGTGCAAGTTCCTGCGCTACTTCTTCTACAAGAACTTCACCTTCACCTTCGTCCACTTCTGGTACGGCTTCTTCTGCGGCTTCTCTGCACAGACGGTGTATGATGAGTGGTTCATAACACTCTACAATCTGGTGTACACAGCACTACCTGTCCTGGGAATGAGTCTGTTTGATCAGGATGTGAACGACGTGTGGAGTTTCCAGCATCCTCAGCTCTACATTCCCGGTCAACTCAACCTATACTTCAGCAAGAAGGCCTTCTTCAACTGTGCTCTCCACAGCTGCTACAGCTCCATGGTGCTCTTCTTCATCCCTTACGCAGCCATGCACAACACCGTGAGGGACGACGGGAAGGACGTTGCCGACTACCAGTCCTTCGCTCTCCTCACCCAGACGTGTCTGCTGTTTGCCGTCACCATCCAGTTAGGGTTGGAGATGTCCTACTGGACAGCGGTGAACACTTTCTTCGTGATGGGCAGCCTGGCCATGTACTTTGCCGTCACGTTCACCATGTACAGCAACGGCATGTTTCTCTTGTTGCCGTCAGCCTTCCCTTTCTTAGgAACAGCCCGTAACTCTCTGAACCAGCCCAACATTTGGCTGACGATCCTCCTCACCTCCATCCTGTGTGTCCTTCCTGTGGTTACCTACCGCTTCCTGTTAATTCAGCTCTGCCCCACCATCAATGACAAGGTGATGTTCAAGGTAAGACGGGCCAAAGCAACACCGGCCCCCCCGCCTCTACGCACCCGCATCCGCCGCACCAGCTCCCGTCGCTCAGGCTACGCCTTCTCGCACGCGCAGGGCTACGGGCACCTGGTGACTTCGGGACGGTTCTTGCGGCGTCCTGCTTTGTCGGCATCTTCAGGTTTCGCCAACATAGGTCGCACCACAACTGGGTTCAGTCCCATGGGACGATCGGCTGGATACAGCCCGACAGGACGCCCCCAGAACGCCAAGGTCCCAGATGTGGAGGTGACGTCGCTGCAGATGTACAGGACTATCAGAGATCCTGTCTTCTGACGGACAGCTGGTTATCTTCAAGATGGAACATCTGGGAGAAGGAATAATGCAAGCTAAACAGCTGGATGCCCCTGGTGCTTTTAAGCTCCCATTTGTTACCATGAGGAACTTGCTTGGGctttccagagagagagagagagtcaaggATTTTAACGAAAATCTGTCCAATCACCTAAAAGTGCACGACTTTTGCTCCAAGCATTTCATTTTGTAAAAGTTTTATCAAAGGGAACTACAGCAAAATGTGTCGCCACTTCTGATGGGTACATGGATCACTTTCCTCAGATCATGAGTATTCATGTAAAACATGCCTCATGCAGAGCTAACAGATGAACTCTTTCTGACACAAAAACCAGTAACAGGGTGATTCACTTTCAGACTGGAACAACCACAGAGGGGAAACATTTTGGCTTCATGAGAAGGACAAAGTGTCATCATGTTTACAGACTACCACGATTTCCTTAACCCTGGGAGTCTAGATGCACAGCAGGATACAACCAGCAAAGCCATTTTGCATAAGAATATTTaaattttgtactttttaagcTTTAAGCTGTTAGCCCTTTGGCAGCATCACATGGCAGCGGGGGATAACTTAATGTCTGGAAGATCATGAATGTTTCAAAAAGTGCTCCCAACAAATGTTCATCTTCTCAGAGGAAGAGATGTTATGGCAAGCATTGTTGGTCAATCCAGCATTTGTtggaaatgtttctttttacagtatgtatttttcatcactttatgTGTGCTGAAAGAATTTCATGCTACTTAAATGAATTTAGGAGAAGAAAACAGATCATTTTTGTGTAGCAGACCCTATTTTTGATTTACAGCTAAACCACAGGGACATTTAAATTACAATCTAAAGGACCACTGTGTAATCGGACATACTTTATACTTAAAGGGTTTATGAGTTTTAAGTAATAATTTTATTATTGgttagaataaataaataaatgaaatataatTGCTTTACAGATAAGAAAAAAGCTATTAATAAGAACAGTGTTTGGACTGGACTGCCAGgttgtaaaaatgtatataactttctctgtcttttcagATAACTCCTCTGTGCAGCTTGACAGGTTATTCTGAAGTGAGAAACCTAAAAAGTCTTTATTTATAACATCAGCCCTGATGGCTAATTAGGAGTCATAAAGGTCATTTCTTTACAGATACAATTAATAGtaagtaataaataaaacagttcTTATACTTTAGTAATCCGTCAAGTATGGCGTTTAATAATTTATTCTTAAGTGCACTgctattaataatattaaaactATTTATTATAGTAGTTTAAATGAAATTTGTCGTTAAAAGAGAGATAATGGTGCCGGGCCCCAAAAAAaggataataataaaataaataattgtaattatAAAGTTCTTGATAAATGGATTTTGGTCTGTAAGATCTGCAGTTCTGCATGTGATTAAACTGATGGATTAGTCTTCCTGtatgataaataaatgaaagcaTGTGAAAAGATGGAGAAAGTTATGCTGCTGGAGGATATACAGTACACCATCCATCAGCCATACCAACTCATCCTGTGTAGGGTCGCTGGGGAGcatatcccagcatgcactgggcgGGTTCACCCTGGGCAGTTTCACACTCACACCTACGAGTGAATTTAGAGTCCCCAATCAACACGACtttctttggcttttatttttttacaatctGGCAACGTAAAAGTTGCTCCTGATTGATTCCTGATCTGAACAATTTATAAAGAATGCCTTATTACAAAGTGGTACCAACATTTTCTACAGTGCATCTTTATGCATTGTAGTGTAATGTACCTCAGTGTTATGGTCTTGGGTTTACATTTTGAGTTGTTTTCCAACTCTAGCAACTGAGAATCTAAGGCCCTGTTTAAGCCTACTGTGTAGCCCAGGGATATAACCAGATCATGTCTAGATCCAGTTTAGAGGGATAGTAGTTCAAATATGTGTACCAGAATGTGTCTTAAATGCTCCTTGAGTGACCACTTGAGACAAAATTCAGCATCCCTACCGATAAATAtggaaaactgcacattttcacCTCATCAAACAGCATGAGAAGTGGGCTACGCCGACCGTACAGACGTTAAAGATTGTCTGAGTTGTTGCTGTAGAAAAATCAGCCACATCTACCTGTGTTTGGGAGATTTATTGTACTGTACAGACACTACACAGTTGACTGGGTGATCCTATAATCCATTCCTTTTAGTGCTGAGTGTGGGCAGAGCCTAAAAAACACTGCTTAGACAATTCCCATGAACTTTTAATCTTGCAGAACATAAATCATAATGATTTTATACCCTATTTTAAAAGCAGATACTGTATCACATCGTGCATAGTCATTATTTCAAAATCATGTATTTGCTTTAGCAACAAGCTTGCTGCTTTACGTCTGACAATCAACTTGGTAGTTAGCTGTATTTCTAATTTTAATAAGTAGTGTATCTTATCTTGTTTCCaacatctttctctctttagTTCACTGAAAATATGAGCTAGCGTAGAAGGACACACAGAAGCTGCCTTAatattaaagaaaacaaaagtccTATGTTATGCAATGCAGAGACAACAGTGACAAGAATGTTTGATGGAAGATAAGgatgttacaaaaaaaatgtaagttaaGCACACATATTATTCCATACaggtgttatttttttaaatgttgtgtttcttGTTTCAACCTGAAGATGATAGCTGGTCCGTGGGATcaatcattcatttattctttGGTGTGTGACGGTATAAagaatgggccaaaatgtaaTTCATTTTATAATTAAGCAATAATgctattttaatgtttaatagttCCCTATATTCTTTCTTTTCCGTGCCTTGAGGTATACTTGGATGTGCAATTAGTGGTTTAATTCACTCATCAGTTTTTCATCTACGGTTCAATTTAAACCATTAACACGGCTGATGGATGCCTTGACATTATAAACTGTGGTGTTTTTATCTGAACGTCTGTCACCACAATGAGATTCAGTGAGTTGTTGCCCAGAATTGAATGTACTAGCCCACTAAGCCTGGTGGTGAaccaaagatatttttttcaaggttttgcGTGTCATAGTTCACTCTAAAGTGAAAAGGTTGCTCATCAAACAGAATCTGATGCTGGAGGTCAGTGTGATGAAGCTGGTTTGCACCACTGACAACTTACTTATTACTTACAAGTGTTTTTTATGGAATAATGTAAAAGTTTGAATATGCAGAAGAGCCATTTATTACTGTTGCTGTAATTGAATCTTTGTCCAGTTGTGTGTAAATCAAGCTCAAAATCaagttttgttgtgtgttttcagtgttttgaGGAAGGATCTGGTAATCCAGTTGTTAGATCTTTGTTAGATGTCCGATGTTACCAATTTGATCGTAGCGGGGTCCGTTTCACAGAAGCAATCTGTAAGCCGTGCTTACTTACAGATCACAGATGGTGAATGAAAACTTTATATTTATCAGTATATCATATATCTTTTGCACTGAAGACAGAAACTGTAACATAAGGgatttttgataactttttCTCAAACGTGGCAAAAGTATTCAGTGATTTTTGCTCTACTCTTACTGATAAGCATTTTGTATCATTTTgtactaaaaaataaatgttactgCAATACAATTAC

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006812 cation transport biological_process
GO:0045332 phospholipid translocation biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01530 E7.6.2.1; phospholipid-translocating ATPase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88467 lncRNA upstream 2952 31461798 ~ 31510356 (+) True G66117
XR_005639425.1 lncRNA upstream 28307 31478501 ~ 31485001 (+) True LOC120560111
XR_005639426.1 lncRNA upstream 28307 31478501 ~ 31485001 (+) False LOC120560111
TU88421 lncRNA upstream 95048 31409955 ~ 31418260 (+) True G66107
TU88405 lncRNA upstream 104152 31351198 ~ 31409156 (+) False G66092
TU88479 lncRNA downstream 194025 31759188 ~ 31763725 (+) True LOC120561307
XR_005639580.1 lncRNA downstream 197823 31762986 ~ 31763773 (+) False LOC120561307
TU88608 lncRNA downstream 641756 32206919 ~ 32209511 (+) False adamts3
TU88639 lncRNA downstream 683838 32249001 ~ 32249240 (+) True G66253
TU88641 lncRNA downstream 725609 32290772 ~ 32291019 (+) True G66255
XM_039802281.1 mRNA upstream 23782 31485063 ~ 31489526 (+) True LOC120560109
XM_039802283.1 mRNA upstream 23782 31485063 ~ 31489526 (+) False LOC120560109
XM_039804031.1 mRNA upstream 51864 31456500 ~ 31461444 (+) True LOC120561065
XM_039803436.1 mRNA upstream 196886 31315299 ~ 31316422 (+) True LOC120560681
XM_039803819.1 mRNA upstream 212863 31273898 ~ 31300445 (+) True hs3st1l2
XM_039803081.1 mRNA downstream 4879 31570042 ~ 31660267 (+) True dapk1
XM_039804358.1 mRNA downstream 105362 31670525 ~ 31675115 (+) True ctsla
XM_039804361.1 mRNA downstream 134363 31699526 ~ 31757504 (+) True kank1a
XM_039804359.1 mRNA downstream 134363 31699526 ~ 31757504 (+) False kank1a
XM_039804360.1 mRNA downstream 141207 31706370 ~ 31757504 (+) False kank1a
TU88223 other upstream 627143 30857580 ~ 30886165 (+) False LOC120561064
TU88162 other upstream 935149 30574086 ~ 30578159 (+) True G65899
TU88039 other upstream 1261789 30247983 ~ 30251519 (+) True LOC120560820
TU88040 other upstream 1263040 30247939 ~ 30250268 (+) False LOC120560820
TU88038 other upstream 1263068 30246887 ~ 30250240 (+) False LOC120560820
XR_005639593.1 other downstream 244469 31809632 ~ 31810279 (+) False dmrt3a
TU88617 other downstream 561130 32126293 ~ 32136966 (+) True G66231
TU88642 other downstream 757344 32322507 ~ 32329990 (+) True G66256
TU88651 other downstream 799697 32364860 ~ 32369984 (+) True G66263
unassigned_transcript_266 other downstream 1006525 32571688 ~ 32571759 (+) True trnap-ugg

Expression Profile