RNA id: XM_039803522.1


Basic Information

Item Value
RNA id XM_039803522.1
length 3078
RNA type mRNA
GC content 0.50
exon number 18
gene id hk2
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 6895202 ~ 6941736 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCGAGGAACTACTACAAACTTCAGGAAGCTGGAGGAAGTTTCTTATTAACGTTACGACTGCGTTTTTAACCTTTTAACTACAGTTTAAATTCCCGAGTTTTTGCGACAACAAACCAAGCGGCGGGTGAAAATActattgtttttgtgttgattatttaaaaaaaagctgtcTTTGTAGCTCAACTGTGTGCAAGTGTAAAGCAGAAGGACGAGCAGGAAATAAAGTCGCTACACATCACTAACTAAAGATGTTAGCTTCGAGTCTGCTGGCTAACTACTGTACCGAACTTCATGATGACCAAGCGCATAAAGTGGACAAATACCTGCACCAGTTTCAGCTGTCAGATAAGACTTTGATGGATTTGTCAATAAGATTTCGACGAGAGATGGACAAAGGCCTGTGCAGAGACACCAACCCCACAGCTGCTGTCAAGATGTTGCCCACGTTTGTGCGCTCCACTCCTGACGGAACAGAACAAGGTGAATTCCTGGCACTAGATCTGGGTGGATCCAACTTCCGAGTGCTTCTGGTCAAAGTTATGGCTGATGGCAAGCCAGCGGTGGAGATGGAAGATCAGATATATGCCATTCCTGAACACCTCATGAGAGGCTGCGGATCTGAGTTATTTGACCACATAGCTGATTGTCTGGCTAACTTCCTGGAGAAGTTGGGTATAAAGGATAAAAAGCTTCCTCTGGGTTTCACCTTCTCTTTTCCCTGTCAGCAGACCAAGTTGGATGAGGCTGTTTTGGTGTATTGGACTAAAGCTTTCAAGTCAAATGGAGTAGAGGGAAAGGATGTGGTCAGCCTTCTTAGAAGATCTATCAAAAAACGAGGGGACTTTGACGTTGACATTCTGGCTGTGATCAATGACACAGTAGGAACCATGATGACCTGTGGCTACGATGATCATCACTGTGAAATTGGCCTCATTGTGGGAACGGGGACCAATGCCTGCTACATGGAGCAAATGAGGAACCTTGAGCTGCTGGACGGTGACGAGGGCCGGATGTGTGTTAATACAGAGTGGGGTGCTTTTGGAGACGATGGGGCTCTGGAGGACCTGCGCACCGACATTGACCGGGAAATAGACGCAGGCTCTCTGAACCCTGGCAAGCAGCTgtttGAGAAGATGATCAGTGGCCTGTACATGGGGGAACTTGTGCGTCTAATCCTGGTGAGAATGACCAAGGAGCAGCTGCTGTTCCAGGGCAAGACTACAGCAGAGCTCCTCACCACGGGAAGCTTCAACACCAGCTACATCTATGCCATTGAGAATGACaaAGATGAGGAAGGCCTGGCGAGTGCAGAGAAGGTGCTCCGGGGCCTGGGTCTGGACCCGTTGGTTGAGGACTGCATATCCACTCAGAGGGTGTGTCAGATAGTATCTACACGGGCCGCACATTTGTGTGCTGCCACTCTAGTGGCAGTTCTGCGGCAGATTCGGGATAACAAAGCAGCTGAGAAGCTGCGTACGACTATTGGCGTGGACGGCTCTGTTTACAAGAGTCATCCAGAATTTTCGAGGAGGCTCCACAAGATGGTAAGGCGACTTGTGCCGGACTGTGATGTGCGTTTTTTGCAGTCGCAGTGTGGCAGTGGGAAGGGTGCAGCCATGGTAACAGCAGTAGCCTACCGCCTTGCCGCTCAACATGCTGAGCGTCAGCGCATTCTCGACACCTTGCGTTTAAGCCGTGAACAGCTGCTGGAAGTAAAGAGGCGAATGAGTGAGGAGATGGTGCGAGGCCTGTCGAAGCAAGCGCATGAGCAGGCAAGCGTCAAGATGCTTCCCACCTATGTTAGAGCCACACCGGATGGAACAGAGAATGGCGACTTCTTGGCTTTGGACCTTGGGGGCTCCAGCTTTCGGGTACTGCTGGTGCGCGTGCGAAGTGGAAAGAGACACAATGTGGAGATGCACCACAAGATCTACACTATTCCACAGGAGACGATGCAGGGCACAGGGGAAGAGCTTTTCAGCCACATTGTGTACTGCATCAACGACTTTCTGGAATACATGGGCATGAGTGGAGCATCCTTACCTCTGGGATTTACATTCTCCTTCCCCTGTCATCAAAGCAAACTGGATCAGGGCATTCTTCTAAAGTGGACAAAGGGTTTCAAAGCCAGCGGCTGTGAGGGACAAGACGTTATCACATTACTTAAAGATGCTGTCCACCGCAGAAAGGAATTTGACTTGAGCTTTGTGGCGGTGGTTAATGACACAGTGGGAACCATGATGACCTGCAGCTATGAGGACCCCAAATGTGAAGTGGGACTCATCGTAGGTGAGTCTGTCAACccctcaccttcctctctgGAAGGTGGAAggggggggggggggggttggagtGGGGGAGCATTTGGTGACAATGGCGAACTTGATGACTTCTGCACCCAGTTTGATCGCATTGTGGATGATTGCTCTAACTATCCTGGGAAACAGAGGTATGAGAAGATGATCAGCGGCATGTACCTGGGGGAGATAGTGAGGAATGTGCTCATGGATTTTACTGCCAAGGGCTTACTGTTCCGAGGCAAACTGTCCGAGCGACTCAAGACCCGATGCATCTTCGAGACAAAATTCCTGGCACAGATTGAAAGTGACCGCCTGGCCATGCGACAGATCCGCTCAATTCTGCAGCACCTGGGCCTCACCAGCTCCACATGTGACGACTCCGTACTGGTGAAGGAAGTGTGCAGTGTGGTGTCACGCCGTGCAGCTCAGCTCTGTGGTGCTGGTTTAGCTGCTGTGGTCGACAAGATACGACAGAACCGCAACCTGAATCAGCTTTCCATCACCGTGGGAGTGGACGGCACCCTTTATAAGACACACCCTCATTTCTCCAGCATCATGCAGGAGACATTGCAGGATTTGGCACCGCAGTGCCAGGTGACTTTCCACAAGTCCGAGGATGGAAGTGGGAAAGGAGCAGCACTGATCACAGCTGTGGCCTGCAGGATCAAGCGCGACGGGCAGCACTGAATTGTCAAGACTTTGGACAGGTAGAACCCAAAGCTCCTATGACTGATTTTTCTGTACCAGGTCACCAAAATAAAGTCTCATACACCTTGA

Function

GO:

id name namespace
GO:0046835 carbohydrate phosphorylation biological_process
GO:0006096 glycolytic process biological_process
GO:0005524 ATP binding molecular_function
GO:0004396 hexokinase activity molecular_function

KEGG:

id description
K00844 HK; hexokinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80127 lncRNA downstream 752 6838511 ~ 6894450 (-) True G59663
TU80088 lncRNA downstream 73297 6821528 ~ 6821905 (-) True G59630
TU80087 lncRNA downstream 76734 6818183 ~ 6818468 (-) True G59629
TU80059 lncRNA downstream 98532 6759512 ~ 6796670 (-) True G59602
TU80054 lncRNA downstream 153870 6741043 ~ 6741332 (-) True G59599
TU80139 lncRNA upstream 13192 6954928 ~ 6958312 (-) True G59674
TU80224 lncRNA upstream 34869 6976605 ~ 7029413 (-) False G59734
TU80216 lncRNA upstream 39284 6981020 ~ 7029413 (-) False G59734
TU80237 lncRNA upstream 55351 6997087 ~ 7007287 (-) False G59742
TU80239 lncRNA upstream 62589 7004325 ~ 7027204 (-) True G59742
XM_039802025.1 mRNA downstream 833340 6048963 ~ 6061862 (-) True tbx1
XM_039802026.1 mRNA downstream 833341 6048963 ~ 6061861 (-) False tbx1
XM_039804097.1 mRNA downstream 1227993 5643204 ~ 5667209 (-) False tango2
XM_039804096.1 mRNA downstream 1227993 5643204 ~ 5667209 (-) True tango2
XM_039802582.1 mRNA downstream 1268817 5607031 ~ 5626385 (-) True dgcr8
XM_039802066.1 mRNA upstream 219565 7161301 ~ 7169700 (-) True ch25hl3
XM_039803504.1 mRNA upstream 241077 7182813 ~ 7212011 (-) True erlin2
XM_039803947.1 mRNA upstream 279105 7220841 ~ 7223583 (-) True LOC120561006
XM_039803946.1 mRNA upstream 279805 7221541 ~ 7223583 (-) False LOC120561006
XM_039804558.1 mRNA upstream 340680 7282416 ~ 7285425 (-) True znf703
TU80011 other downstream 371528 6522759 ~ 6523674 (-) True G59563
TU79962 other downstream 468391 6426206 ~ 6426811 (-) True G59521
TU79961 other downstream 468391 6426250 ~ 6426811 (-) False G59521
TU79960 other downstream 468416 6426206 ~ 6426786 (-) False G59521
TU79959 other downstream 468416 6426250 ~ 6426786 (-) False G59521
TU80230 other upstream 49467 6991203 ~ 6996856 (-) True G59739
unassigned_transcript_243 other upstream 569485 7511221 ~ 7511291 (-) True trnag-ccc
TU80421 other upstream 642350 7584086 ~ 7584519 (-) True G59881
TU80531 other upstream 937688 7879424 ~ 7887403 (-) False anapc7
TU80745 other upstream 1459286 8401022 ~ 8402566 (-) True G60145

Expression Profile