RNA id: XM_039803550.1


Basic Information

Item Value
RNA id XM_039803550.1
length 1839
RNA type mRNA
GC content 0.46
exon number 9
gene id psat1
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 27529250 ~ 27537821 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAACTTTGTCAGTCGACAATACGAGTTTACGAGGAGTTCGTGAACgcaacattttacacacactgCTAGATTGGCATCCACACCGAGTCAGTGCAGGAGGCGAGCACCGAGCAGAAGTACAGCCGAGGCTGACGGGGAAATCGTTCACATCGCTAAATCAAACACCCAACAGGAAATCTTGTTTACATCATGGAGCAGAAACAAACAATCAACTTTGGCGCTGGACCTGCAAAACTCCCCCAATCCGTGCTGCTTCAAGCACAGAAGGAGTTCCTCAGCTACAGTGGCATTGGTATTAGCGTTCTCGAGATGAGTCACCGATCAGCAGACTTCAACAAAATCCTCAACAAAACAGAGAGTCTCCTGCGAGAGTTGGTAAACATTCCAGACAACTACAAGGTGATGTTCCTACAGGGCGGCGGGTCTGGACAGTTCAGTGCTGTTCCTCTCAACCTGATTGGCCTTAAAGAGGGCATGTGCGCCGATTACCTAGTGACCGGCACATGGTCATCAAAGGCAGCAAAAGAAGCGGAGAAATACGGCAAGGTCAACATTGTCCACCCGAAGCTGGAGAGTTACACAAAAATCCCCGACCCTGGCAGCTGGACCCTGAACCCCTCAGCCTCCTACGTGTACTACTGCTGCAACGAGACAGTCCACGGCGTGGAGTTCAGCTTCACACCTGAAACAAACGGGGTGGTCCTTGTCGCTGACATGTCCTCCAACTTCCTGTCTCGACCTGTGGATGTATCAAAGTTTGGTCTGATTTTCGCCGGAGCTCAGAAGAATGTGGGCTGTGCCGGGGTAACTGTGGTCATCGTGCGAGAGGACTTGTTAGGCCACGCTCTGAAAGAGTGTCCCATTGTCCTGGACTACAAGGTGCAGGCTGAAATGAACTCCCTCTACAACACCCCGCCATGTTTCAGCATCTACATCATGGGTCTGGTTCTGGAGTGGATTAAGAACAACGGCGGCAGCGCTGCCATGGAGACGCTCAACAAGCAGAAGTCCTCCATGATTTATGACATCATCAACGCCTCTAATGGTTTCTATGAGTGTCCCGTAGACGTGACTTGTCGAAGCCGCATGAATGTACCATTTCGTGTGGGGAAAAAGGAGGGAGATGAAGCCTTGGAAAAGGAGTTTCTGGCAGGCGCTTCCAAACGTGGAATGATATCGCTGAAAGGACACAGGTCAGTTGGAGGAATTCGTGCATCTCTGTACAACGCTGTAACACTGGAGGACACGGAAGCCCTGGCCACCTATATGAAAGAATTCCTGAAAGAGCACCAATAAACTCTGGTTTACCTCTAGTTGAGATCCAGGGGATCGCGAAGGTGCACCTGTAGACACGTTTTGTAAAACTGTTCATTGTTCCTAATAAGCTTTAACCACTACAGTTGCCAGTATTGTCTTAATTACATCTGTTTCATAGaattactattttaatgaatttattgaCTAACAGTGCtttaatgtacatactgtaggttATTCTTGTtacaccttaaaaatatatttacattccAGTAAATCTAACTTGGTAATACTTGCATTTTGCAGTGCTATTTCTTGTTTTGATTTTCTTGTTTGAAACCATTATGAACCAATGTCAATGAGTTATCATTTATCACTTCTGTGAACAGAGAGGCAGTGTACACAACCAAACTGACCTGTGCGATGCTGGCCTGGTTTCTGTTATAATGAGGAATTTTGTTAAGAATAGTCACATTACATGGACTCACTGCTGTATAAATGGACCCTcaccaatctgattggctgtagtgGTTATATAAATGAATATACCATTAAAGGATGGTTCACCAAACAtgcaaaaaa

Function

GO:

id name namespace
GO:0006564 L-serine biosynthetic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0004648 O-phospho-L-serine molecular_function

KEGG:

id description
K00831 serC, PSAT1; phosphoserine aminotransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87249 lncRNA upstream 52284 27476748 ~ 27476966 (+) True G65171
TU87150 lncRNA upstream 139388 27389457 ~ 27389862 (+) True G65108
TU87147 lncRNA upstream 150035 27378998 ~ 27379215 (+) True G65106
TU87122 lncRNA upstream 158291 27299932 ~ 27370959 (+) False G65084
TU87119 lncRNA upstream 178695 27299932 ~ 27350555 (+) False G65084
TU87374 lncRNA downstream 365254 27903075 ~ 27904933 (+) True G65272
TU87444 lncRNA downstream 464718 28002539 ~ 28005121 (+) True G65314
TU87497 lncRNA downstream 833635 28371456 ~ 28371841 (+) True G65362
TU87515 lncRNA downstream 924804 28462625 ~ 28463104 (+) True G65378
TU87522 lncRNA downstream 1083264 28621085 ~ 28621299 (+) True G65385
XM_039803548.1 mRNA upstream 1367 27521322 ~ 27527883 (+) True kiss1rb
XM_039803551.1 mRNA upstream 8810 27516790 ~ 27520440 (+) True LOC120560745
XM_039803552.1 mRNA upstream 12661 27510426 ~ 27516589 (+) True isca1
XM_039803647.1 mRNA upstream 19615 27485702 ~ 27509635 (+) True tut7
XM_039804557.1 mRNA upstream 56431 27470256 ~ 27472819 (+) True gpx8
XM_039804348.1 mRNA downstream 27138 27564959 ~ 27600806 (+) False LOC120561295
XM_039804349.1 mRNA downstream 27138 27564959 ~ 27600806 (+) False LOC120561295
XM_039804347.1 mRNA downstream 41199 27579020 ~ 27600806 (+) True LOC120561295
XM_039803964.1 mRNA downstream 70287 27608108 ~ 27624072 (+) True mccc2
XM_039804592.1 mRNA downstream 89157 27626978 ~ 27661781 (+) True tmem8b
TU87117 other upstream 227480 27205234 ~ 27301770 (+) True G65084
TU86927 other upstream 871281 26645020 ~ 26657969 (+) False si:dkey-178e17.1
XR_005639500.1 other upstream 886769 26614237 ~ 26642481 (+) False cltcl1
TU86791 other upstream 1032922 26494335 ~ 26496328 (+) False c6h22orf39
TU87830 other downstream 1812303 29350124 ~ 29351753 (+) False ubac1
XR_005639517.1 other downstream 2649027 30186848 ~ 30212108 (+) False fbxo21
TU88038 other downstream 2709066 30246887 ~ 30250240 (+) False LOC120560820
TU88040 other downstream 2710118 30247939 ~ 30250268 (+) False LOC120560820
TU88039 other downstream 2710162 30247983 ~ 30251519 (+) True LOC120560820

Expression Profile