RNA id: XM_039803565.1


Basic Information

Item Value
RNA id XM_039803565.1
length 4124
RNA type mRNA
GC content 0.44
exon number 18
gene id rufy3
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 32404387 ~ 32426382 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATCTCTGGTCATGTGAACGGATTGCTGGACCGCTGACACAGCGCGCAAACTCTCGCGAAATTAGCAACAGATTTGACCAAAATGCTAATGCAAAGCTATTTCCGGGTCAGGATGAGGCTGTGGAGGACAGGACGAAAGGCGGAGTGATTACTGGAGAGATTTTGCCGTTAAACTGATCAGCCCATCGATTGTTTTGCTTTCCTAACCACGGCGGTGCATGGccgcagtaacgttagctaaccgcACCTAGCTATCTGACTGACAGCCCCCTCGCTTGGTCACATGAAGTTAATTTAACCCAGTGGAAGGATGGCGGAGCGGGACATGTCGCCGGGAGAGCTACCTCTGCATTCATCTCCAGAGGTTTCCGAAAGTTCTGCGAGAAAACATTCTTCAGATGAAAACGGACACGCTGATAGTCCAGATGACACTCTCTCCCCGACTTCGGTGATTTACTTCAAGGAGGCTTTAAACTCAAACTTGAGATTTGGGAAGGCTGGGTCGCTGTCACCCACTCCGCTTCGACAGTTTGACTTCAGGATTGAAAGAATCGACTCAAAGCGCAGAAATCCCAAGGATCCCATTGCAATCGAAAGGCTTAACTTGATGAACATGGCCAAACTCAGCATCAAGGGCCTGATCGAGTCTGCCCTCAACCTCGGGCGCACACTCGACTCTGACTATGCACCTCTCCAGCAGTTCTTTGTCGTGATGGAGCACTGTCTGAAACATGGGTTGAAAACCAAGAAGACCTTCCTGGGGCAGAACAAGTCATTCTGGGGGGCGTTGGAGCTGGTGGAGAAGTTGACACCTGAAGCGGGAGAGATCACTGCCAGTGTAAAAGACCTGCCTGGCCTCAAAACTCCCCTAGGAAGAGGGCGTGCCTGGTTGCGACTGGCCTTGATGCAGAAGAAACTCTCCGACTACATGAAGACCATCATCAACAGAAAGGACCTGCTCAGTGAATTCTATGAGCCGAATGCGCTGatgatggaggaggagggagccGTCATCGCCGGTCTGCTTGTCGGACTAAATGTCATTGATGCCAACCTGTGTATGAAGGGAGAGGACCTGGACTCTCAGGTCGGGGTGATTGATTTTTCAATGTACCTCAAAGATGGTGGACACAGTAGTAAGAGTGCAGAGGGTGACGGTCAGATCACAGCGATTCTCGATCAGAAGAACTATGTGGAGGAGCTCAACAGACATTTAAGtgCATCAGTAAACAACCTCCAGGCCAAGGTGGACGCTCTGGAAAAGTCCAACACAAAGCTAACAGAAGAGCTCGCAGTGGCGAATAACCGTATCATCACTTTACAAGAAGATGTGGAGAGAGTAAAGGAGGAGAGCTCATATCAGCTGGAGTCCAGGAAGcCATCAAGAAGCGACTCAGCAGCAAACGGACAAGCACTGGGTGAAACACGCAAGCAGCTCAAAGAGGAAACTTTGCTGCGATTGGATGTGGAGAAGGAGTTGGAGGTGCAGATTGGAATGAAGCAGGAGATGGAGCTGTCCATGAAGATGCTGGAGAAAGACATCTGTGAGAAGCAGGACGCTCTGGTGGAGCTCCGACAGCAGCTGGAAGACCTCCGTGTCATCAACCAACAGCTTAGCCACAAGTCACAGAGTGCAGACGCCGGCTCTAAACAGAAGAGTGAAGCCATCGCTCGCCTGGAGGAGAAAATCAACCAGATGACGGGGACCGTGAAACAGATGGAGACCAGATGCAAacaggctgagagagagagggatttGGCTTTGGAGGCCAACCGGCTCTTCAAACAGGAGTTTGGGGACAAAATCGAGAGTCTGCAGGTGGAGGTAGAGCAGCTGAGGAAACACAGGTCTAATCTGGAGCTGGAGCTGAGAAAAGAGCGAGAGCGAAGGAGTGAGCATCATCTCGATGCTGCGTCCGCGCACTCCGGTACTCTTCGGAAGGAGAGGAGACTCCCACAGAACGTACCAAAACGTCCCCCAGAATCCCCATCAGTCAAAAGGGAGACTGACCAGTTACACACAGCAGCGGAGGACCAAACAAATCTGAGCTCCAGCTTGTCCTCACGGTCACACCATGAGGACGAACAGGACGAGTCCTCCATGGAGATCAGTCAGCCTTCCATCTGTACAATGTGTGAGCAGGACGACTCCCTCCTGAAGACAAAGAAACAGTGTAAGAACTGCAACGGCATCTTCTGCGAGAGCTGTGTGTCCAACGAGCTGCCGTTACCTTCCTCCATTCTCCCAGAGACTGTGTGTACCGCCTGCTTCTCTCGGTTACTCCAACAATACGCTTCGACGCCAACATGAAACGACTCTGCATTTTACTACAAGACATGACGATCGGACACCTGGAAACCAGAGGCATTCATTTGTAAAACTGGCACTGCAAAAATGCACTTTTTGACTTTGTGACTCGAGACATAATGAAAGGTCGGACGGAGTCAGATTCAGATCAGGTTAAGTTGGCAATGTCCAAACATGTGCCACTAAGAGCTGATTGAATTCaggttttcatttttcaaattctgGTTTGGCCATAATTCTTCCTTTCTGGCTGAAAGTGTGTGTTGAGCTACTGTGGTATTTCTGAAGACCTGCACTCAAAAAGCTGTAAAATGGAACCTGGATGGAGATTACTGATTTGAAAAAGACAACCTTAATCATCtcatgcattaaaaaaaaaaaaaaactgactttcCACAATGTCCACTAAGTGGATTATTGATTAAAAGGCCACCTAAcgatatatattttatataatttagttttaaaagttggggaaaaggaaagaaggaaaaactGGACTTGTTGCTCCATTACAACACAGCTGTTAATCCTATACAGAGCAGTATGTGATGTATCATTTTACTTAGATGAAGCATGAATTTTATGATTCAGGCTGATGctgacaaaatcaaatatcccaaacacttttgaccaaatactatattatactatattacGTGTCAATATTTTGGGAAAGACCGTGTGCTCTCAAAAGCTTTTTATACACGTATCATACATTAGTAATAAACTCAGTCtaatgagtttaaaaaaagaaaaaaaaatgttacaacTAATGCAAAATGTTAAGACCAGAAAAATTGAAATATTTAAGTTCTATGACAATGTTATGATGACCAGAATCCTAGACTGCTAGACTACATCTAGTCTCTTATCATGATGTCAATATTTGATGGACATATCATCCAGCTTTGGTGTTGAGACTGTAGAAGAGAGTTGATTTTGCTGTTCGACATTTTGGGCAGCGCGCTTATTCTGTCTTGCGGAAAGTTAGATGAGacgattgataccactctcaagtACGTCCGTTTAGTGTTCAAGCTACAGACCGCAActgtttagcttagcttagcttagcacaaagactggaaacgagAGGAACTTATTTGCTCGTTAACATTTTATAtcttgtttaatctgtacaaaaacagacaaagtgtaCTATTTCTTGGGTTAATTAGCTTTAGAGGTACTGCTAGGTCGATTGTTTTACCTTTCGACTAAGCCAgatagtctttatgctaagctaagctaactggctgcagcTTCACATTTATCGTACAGATGTATAGAGTGGTATCGCTctcagcaacaaaaacaaagcaaataagtgtatgTCCCAAAATGTCAGATTATTCCTCAAGTTTACAAAGCTGAATATTCTATATGAAATAATTCTTTACTGTTGCTGTTGTGTTCTATAGAAGTTAGAAGTGGCAGTAACAAAATggctaaaaaaaatcatctcctGTTGACAAGGAATATTTTGTCAAATCAGAGTCTGTTTGATCTCAAACAGTGCAGCTGTTAAAATCACAAAACCCAGCTTTTATAGATATTTAGATTCTAGTCTTTTCAATGGATAATCAAACTTTTTTCTGAACGTCTTAAAATATTTCTGCACTTTTAGAATGCATGGCTCTCTGCCTGACTGGTTTGAAGTGGGCATATCAGCTGTTTTTACGTTTCATTGATTTATATGAAGAATAATTAGAAGCTCGGTAAAACCAGTTTAGCCGTTCTTGTTGAAACTAACTAACACGTGAGATGGAAATGCTTCTTAGATcaacaataaacttttattaattttaccgtT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88641 lncRNA upstream 113368 32290772 ~ 32291019 (+) True G66255
TU88639 lncRNA upstream 155147 32249001 ~ 32249240 (+) True G66253
TU88608 lncRNA upstream 194876 32206919 ~ 32209511 (+) False adamts3
XR_005639580.1 lncRNA upstream 640614 31762986 ~ 31763773 (+) False LOC120561307
TU88479 lncRNA upstream 640662 31759188 ~ 31763725 (+) True LOC120561307
TU88699 lncRNA downstream 43977 32470359 ~ 32470825 (+) False mapk1
TU88701 lncRNA downstream 44803 32471185 ~ 32474048 (+) True G66294
TU88702 lncRNA downstream 48105 32474487 ~ 32475080 (+) True G66295
TU88703 lncRNA downstream 52110 32478492 ~ 32487187 (+) False LOC120560610
TU88700 lncRNA downstream 85237 32511619 ~ 32515505 (+) True G66293
XM_039803991.1 mRNA upstream 194853 32032576 ~ 32209534 (+) True adamts3
XM_039803993.1 mRNA upstream 194853 32032576 ~ 32209534 (+) False adamts3
XM_039803992.1 mRNA upstream 194853 32032576 ~ 32209534 (+) False adamts3
XM_039803995.1 mRNA upstream 194853 32032576 ~ 32209534 (+) False adamts3
XM_039803994.1 mRNA upstream 198635 32032893 ~ 32205752 (+) False adamts3
XM_039803502.1 mRNA downstream 13993 32440375 ~ 32470827 (+) True mapk1
XM_039803277.1 mRNA downstream 50656 32477038 ~ 32510737 (+) True LOC120560610
XM_039803280.1 mRNA downstream 51956 32478338 ~ 32510737 (+) False LOC120560610
XM_039803278.1 mRNA downstream 54270 32480652 ~ 32510737 (+) False LOC120560610
XM_039803279.1 mRNA downstream 59342 32485724 ~ 32510737 (+) False LOC120560610
TU88651 other upstream 34403 32364860 ~ 32369984 (+) True G66263
TU88642 other upstream 74397 32322507 ~ 32329990 (+) True G66256
TU88617 other upstream 267421 32126293 ~ 32136966 (+) True G66231
XR_005639593.1 other upstream 594108 31809632 ~ 31810279 (+) False dmrt3a
TU88223 other upstream 1518222 30857580 ~ 30886165 (+) False LOC120561064
unassigned_transcript_266 other downstream 145306 32571688 ~ 32571759 (+) True trnap-ugg
XR_005639474.1 other downstream 650864 33077246 ~ 33112816 (+) False cds1
TU89079 other downstream 1349543 33775925 ~ 33776398 (+) True G66578
XR_005639528.1 other downstream 2087628 34514010 ~ 34527405 (+) False cfap157
TU89395 other downstream 2339564 34765946 ~ 34773700 (+) False LOC120561070

Expression Profile