RNA id: XM_039803577.1


Basic Information

Item Value
RNA id XM_039803577.1
length 4134
RNA type mRNA
GC content 0.45
exon number 17
gene id LOC120560752
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 17825047 ~ 17850025 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tagacaggctctgaTCAGAGTCTAACTTGACGCCGCTCTGTGTACACAGGAAAGCGTGGCTGCAGCGCCTCCCCCGACCTGAAAGAAGACAAGGAATAGAAGTCAGTCCCATGGTCAGTCCTCCACTAGCTAACTAAACTGCGGAACTACAGCAGCCACACAGACCGTTGCTCCACATTTGTAGCGTGAAGTTGAGGTACAGGGTTAACACGAAGGCCTCCCTTATTGATCACTCTTTTGAGTAGCTTATCGACTGCAGCTAAAATAATTAACGACAACAGTCACACGTTGCTAGTTAAGTTAATGTTAGCAAGTGGCGTGGTTTgacagctagcgctagctaactagctagtcTCATTAGTATTCGACGCCAGTTTCAAAACAAAGCCCGCAAAACCGAGAAGTTGAGACTCCCCTCCAGAATAGCTTGCTTCAAAACAAGCTAGCTGGGTTTGTCAACCGACGGAAGATTAATTACACTATTCGGATTATGTTTGATGCGCTCAGTTAATgcctagctagctaattaacGGTAACATATTTCCCTGACGTTAAGGCTAAGTTTAAGAAGCTGTCAGCAGGTTTGGCTGTGACGCGTTTGAATTTATAACTAATTCAACAGCTAGCGGGCAGCTAGCTACGTGGTTCTGTCAATAAAATTAGGTTCAACTTGTCTTTAAAGCTTGGATTTAAATGTCCGAAAAGAGTTTATCGTCCGGTTCCGATGAGGATGTGGACCCGGAATCCGGGCAGCCTGTGGAGCTCGGAGGCGTCTTAAGCAAGtggaCTAATTACATCCACGGGTGGCAGGACCGATGGGTCGTGTTGAAAAACAATACTTTGAGCTACTACAAGTCGGAGGATGAACGGGAATACGGCTGCAGAGGGTCTTTATGCCTCAGCAAGGCTGTTATCACACCTCATGAGTTTGACGAGTGTCGTTTTGACATCAGCGTGAACGACAGCGTTTGGTACCTCAGAGCTGAAGATCCCGAGCACAGACTCCAGTGGATTGAGTCAATAGAGCTGCACAAGGCAGAGTCTGGTTATGGTTCAGAAACCAGTCTCAGGCGTCATGGTTCCATGTTGTCTCTCACATCAGCAGCCAGTGCCTTGTCTGCCACATCCACATCCTCCTTCAAGAAAGGGCACAGGTTGCGTGAGAAGCTAGCAGAAATGGAAACCTTCCGGGACATTCTGTGCAGACAAGTGGACACCCTGCAGAAATACTTTGACACCTGTGCGGACGTTGTCTCCAAAGATGAATTTCAGAGAGACAAAGTACTAGAGGAGGACGAAGATGAATTTCCTACCACTACAAGACCCAATGGTGAATGTAATCACAACAACCATGGCAGCAAAGAGAAATTGTGCCCCCCTGCCAGTCCCAAATGTATGAATGGAGTAGACTTCAAGGGTGAGGCCATCACCTTTAAGGCCACCACAGCAGGCATCCTCTCTACGTTGTCCCACTGCATCGAACTGATGGTCAAACAAGAGGACAGCTGGCAGAAGAGACTGGACAAGgAGCTCGACAAGAGGAGGAGGGTAGAAGATGCCTACAAGTCTGCTATGTACGAAATGAAGAAAAAGTCACACTACGGAGGCCCAGACTACGAGGAGGGGCCCAACAGTCTGATCAATGAGGATGAGTTCTTTGATGCGGTGGAAGCCGCACTGGACAGACAGGACAAGATAGAGGAGCAGTGCCAGTCAGAGAAGGTCAGGATACCTCGACGAGCTCTGGTTCCTCCAGGAGACATCTACTCCACCATCGGTACACACCGATTTGCCACCAAGGTGGAGGAGATGGTGCAGAATCATATGACTTACTCTCTTCAGGATGTGGGCGGAGATGCCAACTGGCAGCTGGTAATAGAAGAAGGAGAGATGAAGGTGTACAGGAGAGAAGTCGAGGAGAACGGTATTGTGCTGGATCCTCTCAAAGCTACGCATTCTGTAAAGGGGGTGACGGGACACGAGGTCTGCCACTACTTCTGGGACACGGCTGTCCGAATGGACTGGGAGACCACCATTGAGAATTTCAACGTTGTGGAAACGCTCTCCGATAATGCCGTCATTGTTTACCAGACTCACAAGAGAGTGTGGCCTGCCTCTCAGAGAGACGTGCTCTATCTGTCAGCCATCAGGAAGATCTTGGCAACAAACGAAAATGATCCTGACACATGGCTGGTCTGCAACTTCTCTGTTGACCACGACAATGCCCTTCCCACAAACCGGTGCGTTCGTGCCAAAATCAATGTTGCTATGATCTGCCAAACGCTGGTCAGCCCACCAGAGGGTGATAAAGAGATCAGCAGAGACAACATTCTTTGTAAGATCACCTACGTTGCCAATGTAAACCCAGGAGGCTGGGCTCCAGCCTCAGTCCTCAGAGCAGTGGCCAAGAGAGAGTATCCCAAGTTCCTCAAGCGCTTCACCTCCTACGTCCAGGAGAAAACTGCGGGGAAGCCCATCCTCTTCTGAACGCAAAAAGGCTTGAGGTGGGCCAAGGTTGCCCACTGGAGAGACTACATTGTTCAGCCTTTAATCGGCTGTCAAAGACTACATGACCCATTCATTTGTCAATTAGAATGTTAAACTACTACAAACTACTACATGCAGGACACTGTATCATCCAGGACGGCCTACGGGGGACACCTGCTTGTAGAAGAGACTGGTTTTACGGCTTTAATCGATCAGTAGTTGTCATCCCAGCCACATTGTCATGGCTCAACGCCACCTGTTGGTCATGGGTACATTTGGATGTAAATTCAAGAGTTTTTTTCAGTGGTTTTCGAATTGTTGTTACCGAttatttgcttcttttttttgtaaattgtttTGTACATTTCTTATGATTATATACTTCTTGACTCTTTTTTGGATTTTCTTTAATCACTAGTATTACAGCtacttgtgttgctgctgctgctgctaaagtAACTATCATGAGAGAGGAAAGTAGATATTGACAGGAAAACATTGATGAggtgtgtgtctttttcttgCCTTCTCCTGTCCCTCTAGTGATGACTCTCTTTGCAGTTTGATGGGGGGGCCAGAGCCTAAAGCTTTGAAATCTTTATATTTCTAGATTGCATTGTACAGAGAAAACAGAATATGTTTTCAGTTAGTTTATCAATGTGAGAAATGTGAACTGACTGTTAAATGCTTGAATTTGATTACAGTAATGGGCCAAGGAAACCTGGAGTGGGAGATAAAGAGCATTTGCGAAGTCTAAAGTCATGTTGCGACAATATTTTGACACGGTTAAAGCGATAATCAATAATTAGATATCAATGATGTAGTTAACGGTGGTCGGTAGATGCTAAGTTGCGGCCTATTGTCTTGAACCTCCACGTAACACACGGTTTACGGCAGATATTTTCAAATGGCCAGCCATAGTGTCTGATGTACAGATTCCTCTCTTTCATTGAGAGACAAGTGGATACATTTTGTGTCATGTTTGTAAACTAGTCCCGCTGCTATTGTGCAGCATAAGGTTTAAGTTGTAAAATGTAGAGTAGGATATCATCTACACCCTAGACGTTTTTTAGTCATACTCTACATTACATTTCACATGCCACACTACAGTGCAGTGGCCTCCTGCCCTTTGACTGATAAACTACCCCCAGAATGCCTTAGACACCAGGATGAACCCTAAAAATCCTGGTTTGGTTACCTTAAACTGTTCAGCCACCAAATGTGCATTTATCAACACTGAAAATAAGCAGGCGGGCGGGGGCGGGGGAGGAATGGGCGGTACAAAGGGTCAGCATTTCACATCATCTTACCTCAAGATTGGAATTTACCCTAGATTGTGTTTGATGGCATCAAAAGTTGGGAGTTTTGTAATCTGTAGATCTGCATGGTTGAAAATTTACCATCCGATTTTCGGTCTAAGGGGTCAGAGGTTAGGAAGGATCTGGATAATTGTTTTGCTGATGATTACAAGAGCTAGATCTACAAGCAATGTCAGCGGAAGAATGCAtttagtgtttttaattttgatattttgtcaGTAATTTACACACTTTGTATATTTCTAAGTTGTACATTAGAAGTGTTATTATTTGCACTAAATGTAATGCAATTTGACAATGTTCTGTAAATTAAAATTGTTACACAGAA

Function

GO: NA

KEGG:

id description
K08283 COL4A3BP; collagen type IV alpha-3-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83414 lncRNA upstream 11244 17813589 ~ 17813813 (+) True G62294
TU83396 lncRNA upstream 67000 17757855 ~ 17758057 (+) True G62280
TU83311 lncRNA upstream 252356 17568081 ~ 17572701 (+) False tmem167a
XR_005639496.1 lncRNA upstream 280149 17536842 ~ 17544908 (+) True LOC120560616
TU83301 lncRNA upstream 308960 17515654 ~ 17516097 (+) True G62217
TU83482 lncRNA downstream 89002 17939027 ~ 17940846 (+) True G62344
TU83519 lncRNA downstream 165380 18015405 ~ 18017448 (+) False thbs4a
TU83529 lncRNA downstream 204774 18054799 ~ 18056149 (+) True G62372
TU83579 lncRNA downstream 277511 18127536 ~ 18127745 (+) True G62406
TU83580 lncRNA downstream 278801 18128826 ~ 18129069 (+) False setbp1
XM_039804477.1 mRNA upstream 14799 17801445 ~ 17810258 (+) True poc5
XM_039804479.1 mRNA upstream 14799 17801445 ~ 17810258 (+) False poc5
XM_039804478.1 mRNA upstream 14799 17801563 ~ 17810258 (+) False poc5
XM_039803296.1 mRNA upstream 89108 17733568 ~ 17735949 (+) True f2rl2
XM_039803299.1 mRNA upstream 110229 17712920 ~ 17714828 (+) False LOC120560621
XM_039803772.1 mRNA downstream 64911 17914936 ~ 17933428 (+) True kif2a
XM_039803774.1 mRNA downstream 64911 17914936 ~ 17933428 (+) False kif2a
XM_039803773.1 mRNA downstream 64912 17914937 ~ 17933428 (+) False kif2a
XM_039803592.1 mRNA downstream 95770 17945795 ~ 17950057 (+) True LOC120560760
XM_039803325.1 mRNA downstream 102056 17952081 ~ 17967487 (+) True LOC120560642
TU83072 other upstream 1290908 16533329 ~ 16534149 (+) False LOC120560897
TU83070 other upstream 1349152 16468367 ~ 16475905 (+) False LOC120560890
XR_005639530.1 other upstream 1349160 16468323 ~ 16475897 (+) False LOC120560890
TU82943 other upstream 2047916 15763114 ~ 15777141 (+) True mctp1a
unassigned_transcript_261 other upstream 2205913 15619073 ~ 15619144 (+) True trnac-gca_21
XR_005639579.1 other downstream 148661 17998686 ~ 18009318 (+) False cmya5
TU83701 other downstream 480680 18330705 ~ 18331230 (+) True G62513
TU83742 other downstream 557362 18407387 ~ 18416006 (+) False tbx5b
TU83744 other downstream 566103 18416128 ~ 18419590 (+) False tbx5b
XR_005639481.1 other downstream 811132 18661157 ~ 18681161 (+) False acacb

Expression Profile