RNA id: XM_039803593.1


Basic Information

Item Value
RNA id XM_039803593.1
length 1540
RNA type mRNA
GC content 0.45
exon number 12
gene id dimt1l
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 17935376 ~ 17940540 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGAGGCCAGGAAAGAATTTAAACACTGCACATCCTGTCCACGAAGAAAAGCAGGTTACACGTGTTTACTTCGCGCACACCAGTCTATTGCCCAGGcagatatatttttaataatactTTCTGGATCTTTAACCGGAATAAAACCAAGTAAAAATGCCGAAGGTCAAGGCGGAGAAGAAAAGCAGGCAGCACCAAGAGGTCAAAAACCAAGGCATCATGTTTAACACCGGCATGGGTCAGCACATCCTGAAGAATCCATTGATCGTCAATGGGATCATTGAGAAGgctGCGCTGAGGCCGACAGACGTGGTTCTGGAGGTGGGACCTGGTACTGGTAACATGACCGTGAAATTGCTGGAAAAAGCCAAGAAGGTGGTGGCCTGTGAGTTGGACTGCAGATTAGTGGCTGAACTTCAAAAAAGAGTACAGTGCACACCCATGCAGACCAAACTTCAAATATTAGTCGGAGATGTACTAAAAACAGATTTGCCTTTCTTCGACGTCTGTGTGGCTAATTTACCTTACCAGATTTCGTCACCGTTTGTCTTCAAGCTCCTGCTACATCGACCTTTCTTCAGGTGCGCCGTGTTGATGTTCCAGAGAGAGTTTGCCATGCGACTTGTTGCCAAACCTGGAGACAAGCTGTTCTGCAGACTGTCCATAAACGCACAACTACTGGCTCGCGTCGACCACCTGATGAAGGTAGGGAAGAACAATTTCCGTCCTCCTCCAAAAGTGGAGTCAAGTGTTGTCAGGATAGAGCCGAaaaatcctcctcctccagTTAACTTCCAGGAGTGGGATGGCCTGGTCAGAATAGCCTTTGTAAGGAAAAACAAAACCCTCAATGCAGCTTTCAAGTCCACTGCGGTAGAACAGCTGCTGGAAAAGAACTACAGAATTCACTGCTCTGTACATAATGTGGAAATCCCAGCAGACTTCAGCATCAGCAAGAAGATCGAGAGTGTTTTGCAGGAGGCTGAATTCAGTGAGAAGAGAGCCAGGTCCATGGACATTGATGACTTCATGGTGCTGCTTCATGCATTCAACTCTGCAGGGATCCACTTTTCTTAGATGGCAGAGGTTAACTACAGAGACCAGTGCTGCGCCTCTAATTTCCTCCGGCCGTTACGATGAGAGGGGAGAAGTCAGCAGCCAGATGAGCGGGAAGATTGTCTGACTTATCTTTCCTCATCTGGAGCTTTGTTTGGATGACTTGGATTTCAAATGTTGAAATAGTTAGATGAAAGGTACAAAGAATATTGGAGGATACATTTAAAGAGCTCATATTGAGTGTTGTATTTTACCCGTATGAGTACAGATCAAGCGTCCCTGGGCATGCATGGACAGCTTTTGGCAGATGGAAGTTGTATGAGCCCTCTTGGCAGAGCGAGGGCTTGccagtgtgagtgtgagtcattttttgaaaataatctgtaATGGATGATTATTCTAATCTAGAAGCAATCTACAatttgtatgtaaaaaaaaaaaaaacctacttGTGAAGAAGGTAAATATTTAACAAGTGTAGAATTTT

Function

GO:

id name namespace
GO:0031167 rRNA methylation biological_process
GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity molecular_function

KEGG:

id description
K14191 DIM1; 18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83475 lncRNA downstream 1908 17931742 ~ 17933468 (-) True G62339
TU83469 lncRNA downstream 8421 17914926 ~ 17926955 (-) True G62333
XR_005639419.1 lncRNA downstream 35549 17896791 ~ 17899827 (-) True LOC120560086
XR_005639420.1 lncRNA downstream 35550 17896791 ~ 17899826 (-) False LOC120560086
TU83447 lncRNA downstream 92924 17841719 ~ 17842452 (-) True G62318
TU83567 lncRNA upstream 114711 18055251 ~ 18055851 (-) False G62399
TU83570 lncRNA upstream 114711 18055251 ~ 18056143 (-) True G62399
TU83626 lncRNA upstream 294065 18234605 ~ 18235686 (-) True G62452
TU83677 lncRNA upstream 363617 18304157 ~ 18304356 (-) True G62493
TU83781 lncRNA upstream 389063 18329603 ~ 18329892 (-) True G62567
XM_039804606.1 mRNA downstream 25660 17901876 ~ 17909716 (-) False unc45b
XM_039804605.1 mRNA downstream 26017 17900473 ~ 17909359 (-) True unc45b
XM_039803673.1 mRNA downstream 39481 17853406 ~ 17895895 (-) True pip5k1bb
XM_039803674.1 mRNA downstream 52285 17853406 ~ 17883091 (-) False pip5k1bb
XM_039804298.1 mRNA downstream 110633 17815832 ~ 17824743 (-) True polk
XM_039803594.1 mRNA upstream 62 17940602 ~ 17944550 (-) True cenph
XM_039803327.1 mRNA upstream 27038 17967578 ~ 17988335 (-) False homer1b
XM_039803326.1 mRNA upstream 27038 17967578 ~ 17983579 (-) True homer1b
XM_039803328.1 mRNA upstream 34192 17974732 ~ 17988335 (-) False homer1b
XM_039803168.1 mRNA upstream 71762 18012302 ~ 18017408 (-) False mtx3
XR_005639516.1 other downstream 39479 17859355 ~ 17895897 (-) False pip5k1bb
XR_005639575.1 other downstream 330256 17598088 ~ 17605120 (-) False LOC120561236
XR_005639576.1 other downstream 330256 17598088 ~ 17605120 (-) False LOC120561236
XR_005639574.1 other downstream 330256 17598088 ~ 17605120 (-) True LOC120561236
XR_005639495.1 other downstream 367362 17541396 ~ 17568014 (-) False LOC120560614
unassigned_transcript_262 other upstream 19273 17959813 ~ 17959884 (-) True trnaq-cug_5
TU83669 other upstream 352716 18293256 ~ 18296678 (-) False LOC120560503
XR_005639489.1 other upstream 358361 18298901 ~ 18303862 (-) False fancg
TU83796 other upstream 437062 18377602 ~ 18380502 (-) True G62580
TU83799 other upstream 442465 18383005 ~ 18386269 (-) True G62582

Expression Profile