RNA id: XM_039803603.1


Basic Information

Item Value
RNA id XM_039803603.1
length 1155
RNA type mRNA
GC content 0.47
exon number 3
gene id si:ch211-113d22.2
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18382949 ~ 18386253 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACCTCAACCCCCGGTGTCCCCTCCATTAGATACTCCGCTCATCCATTCTTTCTCTGGATTCTGGAAGACGCAGTGACCATTGGCCAGCTGCCATGAAGACTGCCCTGGTCCTGCTGCTGCTCATCTCTCTGGCCTGCCACAGTGCTCTCTCCTGTTCTGTCTGTAAAGGCCACACCCTCAAATGTCACACGTGCGTGGCGTCCAATGATGACGACTGTAATCGACAGGGCTCCACCTCCTGCCCTCAGTACGCTGACGCCTGCTCCACCATCACAGGACCCAGCACCGTGATGAAGTCGTGCACGTACAAGGCTTTCTGCGACAAGGCTCATGGCGTCAGCTCCGGAGCAAAGATGGACTGCTGTTTTGGCGACGACTGTAATGGGCCCCACCGGAGCCACAGCCATGGGGATCACCATCGCAACGGCGCAGGGGCTGTGGCCTCCAGCCCTGTCCTGCTGATCACGGCCCTGCTGCTGCGTGTGGCCGTCAGTCAGCTGTAAACACCTCCACTTTTCTTTCCTCCAGGAATTCATTCATCCTCATTTGCTGGGTTGTCATCCATCCACCTTCTCCTCTTTGTCACTCTGTACCCCTCAGAGATTTTCAATCCAAGTTTACGAAAAGGATTTAAGTGGCATAGATTTCCCGTGGTttaagacaacaacaaaaaattggTTTCTGATGACTGTTGGTGAAGTGAAGGATGTCTGTCCCATAAATACAAGTTTCAGCACTTTAATTgtgtcatttttattattattatcaattaTCATCAAGAACTTGAATAGCAACCTCATTATCTATCGATTATCTATAGTGGTATGTTCACTTTCAGGTGATTTCAAGTTTTAAGAGTGTTTGTGGTGAATACGTGTGCGCAAAGTGAAGTAGACTTAGCCATGGTTTTTATTAAAGCAGGTGTGGTTTCGGTAGGTGCTAGGGTGCCTCAGTGGGTAGCTGGTGTGCAGCTCACTTGATGCCATAGAACCACATTATTCACTTGGGTTGTTAAAATGGTTACCAGAAAGTAAAGTATTTAACATATAACATCACAATCTTCATGAATTGTTTAAATATGTTAATGATGTGTTTAGTGCTTaatttttgtgtgcatgcaagCTTGTCTGATAAAAGACACAATCACACCCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83694 lncRNA upstream 61791 18320643 ~ 18321158 (+) True G62508
TU83688 lncRNA upstream 68172 18313211 ~ 18314777 (+) True G62502
TU83666 lncRNA upstream 86046 18293260 ~ 18296903 (+) False G62484
TU83667 lncRNA upstream 87643 18293260 ~ 18295306 (+) True G62484
TU83580 lncRNA upstream 253880 18128826 ~ 18129069 (+) False setbp1
TU83734 lncRNA downstream 55109 18441362 ~ 18474731 (+) False tpcn1
TU83749 lncRNA downstream 71245 18457498 ~ 18459249 (+) True G62540
TU83769 lncRNA downstream 111710 18497963 ~ 18498301 (+) True G62557
TU83771 lncRNA downstream 112377 18498630 ~ 18498972 (+) True G62558
TU83739 lncRNA downstream 113625 18499878 ~ 18500121 (+) True G62532
XM_039803520.1 mRNA upstream 354 18365745 ~ 18382595 (+) True LOC120560725
XM_039803098.1 mRNA upstream 25317 18345814 ~ 18357632 (+) True ddhd2
XM_039803605.1 mRNA downstream 2858 18389111 ~ 18400741 (+) True si:ch211-204d2.4
XM_039803606.1 mRNA downstream 2858 18389111 ~ 18400741 (+) False si:ch211-204d2.4
XM_039803607.1 mRNA downstream 2858 18389111 ~ 18400741 (+) False si:ch211-204d2.4
XM_039803608.1 mRNA downstream 2858 18389111 ~ 18400741 (+) False si:ch211-204d2.4
XM_039804356.1 mRNA downstream 21095 18407348 ~ 18419214 (+) True tbx5b
TU83701 other upstream 51719 18330705 ~ 18331230 (+) True G62513
XR_005639579.1 other upstream 373631 17998686 ~ 18009318 (+) False cmya5
TU83072 other upstream 1848800 16533329 ~ 16534149 (+) False LOC120560897
TU83070 other upstream 1907044 16468367 ~ 16475905 (+) False LOC120560890
XR_005639530.1 other upstream 1907052 16468323 ~ 16475897 (+) False LOC120560890
TU83742 other downstream 21134 18407387 ~ 18416006 (+) False tbx5b
TU83744 other downstream 29875 18416128 ~ 18419590 (+) False tbx5b
XR_005639481.1 other downstream 274904 18661157 ~ 18681161 (+) False acacb
TU84360 other downstream 1048654 19434907 ~ 19448950 (+) False rasl10a
XR_005639482.1 other downstream 2091559 20477812 ~ 20488838 (+) False wdr31

Expression Profile