RNA id: XM_039803609.1


Basic Information

Item Value
RNA id XM_039803609.1
length 4469
RNA type mRNA
GC content 0.44
exon number 23
gene id smarcad1a
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 22791538 ~ 22811392 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTTCAATTTAGACCGTTTTCGTTTTGACAAGAAGGCGGCGACGACAACAAACAAAGACCAGGATAGCGGATCCAATAGTCCAGAGTCTGAGAAGGAGAACAAGCCAGCTCAGATGAAACCTGTCAAAGCCTCACCAAAGCCCCATGCGCGAGGAGTGGTTTTTGAGGAAGTCCTTACAATTGACTTGGAGGAGGATGAGCTTCTCTCTGAAACAAAGACCAAAATTCCATTATCCAGGAAGTCCAAGAATCCCAAAGGGAAATCATCCCAAAATGTGACATCGGATTACACAGATGATGAGGACAAAGAAATGGAGGAGAACATGAACAGAGTACTGGAGATGTTTCCTCAGTTGTCAAGGACAGAGGTACTGGAGGTTATTAGGAGCACAAGCACATTGGATGGGGCTGTAGCTGCATGCCTTTTAAAGTTTGGTGATAAAGAAGCCACAGACCAAGGCAGGAAAAGAAAGCAGGATGGATCTAGCGGTTCTCAGGAAAGTGGTGAAATTCAACCCAGCAAGAAGAGAAGGTCATCAGTGGTTTctgaagaagatgatgatgacagCAAAGAGCCAAACTGGGAGAAGCAGGAAGCCATGGTCCGAAGACTGCAGAAAAAGTTTCCTGACCAGGACAAGGAGGAGCTGCGGATGGTGCTGCAGGAACACGACTGGAATGTTGACGATGCTCTGCAGGTTCTACAAATGTTCTCAGACCCAGATGCCAGTTTCAGCTCACCTGACACCGAAGAAAAGAAATCCATTAAATCGAAGAGCAAAGACAAGTCGAGCAAGGGCCACAGGAAGTTGACGCGCCACAAAGACCATGGAGACAGTACAAGTAGCAGAGGTCAAAACGACTATTCCGAAGACCATATAATTATTAGTGAAACTGAGGAGGACCGTATAGATGATTCAGATGCTACAAAGGACAGTGAAGACTCAGACAGTGAAGATTCCAAACACCGAAGTAGCACTTCCACTCTGTCAAACAGGCTTAAAAAAAGTTCTGACTCCgtatcctcatcctcctctgtcAAGAAAACGACTACCTCTTCCTCCCTGAAGccgtcctcttcttcctctgctGCTCAGATGCTGTCCAGATTTGCCAGTGGGACCAGTATAGCTAAGAAGCaggcagcagaaagaaagaagaaggcaCGCGCATCAGACGATTATGTCAGTTCTGAGGGGGAAAATGACGATGAAGAGGAGACAGTTAGTAGTGAGTTTGAGGACTCTGATGATGAGCTGGATTCTAACGGTGGAATGACAGATCTGAAGAAAGAGATACTCAAGTTTTTCCAGGATGCAACGATCGATGAGCTGTCTCTTATCGCTGGGTGCTCTGTTAAAAAGGCCCAGAAGATTGTGGAACTGAGGCCCTTTGATGGCTGGCAAAGCctgATTGATGTCTTCCATAAGGATAATGGACTGTCGGATGCCTTACTGCTGGGCTGCAGAGTCGTTCTCAAAGAGCGGCAGGTTGTCCTGGGGCTGATGTCCAAATGCAATACCATTTCCTCAAAAATGTTCAAACAGGTCACTCAGGTGATGGAGAGGGGCACAGGGTCCATGAAGCAGCCCAGTTTACTCAACAGTCAGTACCAGCTGAAACCTTATCAGCTGATTGGTCTAAAGTGGCTGCTTCTTCTGCATGAGCACAAACTGAGTGGTATCCTTGCTGATGAAATGGGTTTGGGAAAAACTATCCAGGCTATAGCGTTTCTGGCCCAGCTGTACCAGAATGGAATAGACGGTCCTCACCTCATCACTGTGCCGGCCTCTACATTAGATAACTGGGTCAGAGAGCTGAAGCTGTGGTGCCCAAGCCTCAAAGTGCTAGTCTATTGTGGATCTGTGGAGGACCGCCGCTACCTCAAACACGACCTCCTCAATGGAGATGATGAGTGCAACGTCATTGTGACAACGTATAACATGGCCATAGGAAATGCCAACGACCGAAGCCTTTTCCGTAAGCTGCGTCTGAAGTATGCTGTGTTTGATGAAGGTCACATGCTGAAGAACATGAACTCTCTGCGCTACCGCCATCTTATGGATATTAACGCTGAGCATCGCTTGCTTCTGACAGGAACTCCTTTACAGAACAACCTCTTGGAGCTGATGTCTCTCCTGAACTTCATCATGCCTTCCATGTTCTCCAGCTCCACTACACAGCTCTCCAAAATGTTttctatgAAATCCCATGAGGAGCAGAGCCGCTTTGAGAGGGATCGTATTTCTCAGGCCAAACTCATCATGAAACCTTTTATCCTCCGAAGAGTGAAGAGCGAGGTCCTCAAGCAGCTGCCAGCCAAGGAAGAGCGGGTAGAGTCCTGCCCGATGAGTGAGAAACAGCAGGTTCTCTACCAGACCCTCTTAAATAAACTCAAGGCTTCAGCCAATGGTGAAAAACACGAGTTGTGTAATGTGATGATGCAGTTGAGGAAGATGGCCAACCACCCTCTGCTTCATAGACAGTACTACACCACAGAAAAGCTCAAAGCCATGAGCAAACTCATGCTCAAGGAGCCAACTCACTTTGATGCAGATGCTGCTCTGATCCAGGAGGACATGGAAGTGATGTCAGACTTTGAGCTGCATCGTCTGTGCCAGCAGTACTCCTCTATCAGCTCCTACCAGCTTGAAAACAATCTCCTGCTTGACTCTGGGAAATTCCTCctcctcacagagctgctggcCTCACTTAAAACCAAGGGAGACCGAGTGGTATTATTCAGTCAGTTCACCATGATGCTGGACATTGTGGAGGTGCTGCTGAAACATCTTAAGCATCGTTATGTCCGACTGGATGGATCCACACCCATAGCCAACAGGATTGTGTTGATTGATGAGTTCAACACGGATCCTGACATATTTGTGTTCCTGTTGTCAACACGTGCTGGCGGCCTGGGAATCAACCTCACCTCCGCTAATGTTGTCATCCTTCATGACATCGACTTCAATCCCTACAATGACAAACAGGCAGAGGACAGATGTCACCGCGTAGGCCAGACCAAGACTGTACAGGTGATTAAGCTGATAAGCAAGGACAGCATAGATGACTGCATGCTGCAGCTGAGCCAGAAGAAACTAAAGCTGGAGCAGGACATGACTACTGCTGACGGTGGTGGTGAGGGGACCATACCTGAAGATATGGCATCTTTGCTCAAAGCCTCACTAGGACtgtgatacacaaacacatgaaacTTGActgtacaaatacatttttgataGCAATCTTGTGATTCTGGGCAGACTTGAGTGTTctgactgaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgtacgtctATACTGGGAAACTACTGAGACCATATGCTGCCATGAAACAAAGTTTTGATGTTGAGATCTGATTTACTGTGTAGCATGTTAGCTGTGCCTAAAACACTATtttttacatgcacacagtttTTGCTTCTACTTTGATTATGAGATCAGTATATAAAGGCTAAACAAAAATGTTGCCTTTTTAAAATTGCAACATGTTATCCAAGGTTACTTTGTAGAAACTTGAAAGTGGTGTTTCAAAGTTAAGACCCAACCGTCAGTAATGCAGCATGTGGTGGAGTACCCCATGGTACTTGTTTGGACAAAAGTATCTGAATTTCACATAAGCCATGCAGTCTTATATTGTTCACATTCTGATAAAGGGGGCTGTATGTTGGTAAGGAAAAGTATGCCTACTGCTTATTAACACTTAACATAAAGTTCTAGCACGGAAATTGTGCAGAGATGGAGAATGGTTGATTTTTATACTATCCTTCCTACCTGACAGTGTTGGATCTTGCCTAATATACATGCTCTTACTTAAAAAGCCagctcttaaaaaaaagaaaaatggtttACATCAGAACTTTTGTTGCTCCTGTAATCCACAGCAACATTGTAACAGCAGCAGATGATGACCACTTCACAGAAAATGTTGCTGTTCACATTGATTAGTTTTGATACCATTCCCAATCAAACGGTTTTGACAGTTGTGGTTGCATTAGAAAGTAAGCCAAGTATCTATGTCAAGGTTTGTCGTATACCCTATATATTTTAAGGCAATTTTCTTGGAAAATGCAGGAGATACATGGTTGTGTCAGTGTAGTCAGTGAAGTTAGTACAGTTTTTCTAGTTTGTAAAACTAGATAAACAAAATATGGAATGTTTAATAAGAACGATTTTTGAATTGGTTTCTTTGCTGTTTCTACTCCTTTTAAATATCTTGAGCTAAGCGACACAGAGATGATGATTTAATGCAGCAGCTGCATTCATGTACTGTGTAAGTGGCTAATGTGTTGTAAGTGTACACGTGTAAGTGAAAAGCTTTTACTAAGTCATTTGTATGTTTATAAAGGTTCCTgtttgaacaaaaaaaataaaggttggAATAAAA

Function

GO: NA

KEGG:

id description
K14439 SMARCAD1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85491 lncRNA upstream 641414 22131884 ~ 22150124 (+) True G63792
TU85374 lncRNA upstream 915851 21875445 ~ 21875687 (+) True G63715
TU85373 lncRNA upstream 946400 21844832 ~ 21845138 (+) True G63714
XR_005639467.1 lncRNA upstream 1170827 21608823 ~ 21620711 (+) True LOC120560273
TU85584 lncRNA downstream 92643 22904035 ~ 22905966 (+) True G63872
TU85631 lncRNA downstream 175789 22987181 ~ 22988040 (+) True G63914
XR_005639470.1 lncRNA downstream 408458 23219850 ~ 23245368 (+) True LOC120560300
TU85721 lncRNA downstream 463528 23274920 ~ 23281109 (+) True G63976
TU85782 lncRNA downstream 619298 23430690 ~ 23432473 (+) True G64026
XM_039802296.1 mRNA upstream 30701 22758111 ~ 22760837 (+) True atoh1a
XM_039803350.1 mRNA upstream 36788 22123035 ~ 22754750 (+) True grid2
XM_039803353.1 mRNA upstream 39525 22123035 ~ 22752013 (+) False grid2
XM_039803354.1 mRNA upstream 39525 22187468 ~ 22752013 (+) False grid2
XM_039803351.1 mRNA upstream 39525 22191058 ~ 22752013 (+) False grid2
XM_039804277.1 mRNA downstream 15234 22826626 ~ 22835070 (+) True tspan36
XM_039804108.1 mRNA downstream 29110 22840502 ~ 22861873 (+) True mapk4
XM_039804109.1 mRNA downstream 29110 22840502 ~ 22861873 (+) False mapk4
XM_039803244.1 mRNA downstream 51192 22862584 ~ 22883874 (+) True me2
XM_039803245.1 mRNA downstream 51192 22862584 ~ 22883874 (+) False me2
XR_005639510.1 other upstream 1192739 21588876 ~ 21598799 (+) False LOC120560787
TU85087 other upstream 2113622 20676417 ~ 20677916 (+) True G63480
XR_005639482.1 other upstream 2302700 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other upstream 2302700 20477812 ~ 20488838 (+) False wdr31
TU84360 other upstream 3342588 19434907 ~ 19448950 (+) False rasl10a
TU85622 other downstream 118507 22929899 ~ 22930205 (+) True G63905
TU85875 other downstream 881270 23692662 ~ 23693291 (+) True G64108
XR_005639471.1 other downstream 2012326 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 2012327 24823719 ~ 24834620 (+) False cdc14b
TU86491 other downstream 2873580 25684972 ~ 25696570 (+) False LOC120561182

Expression Profile