RNA id: XM_039803620.1


Basic Information

Item Value
RNA id XM_039803620.1
length 5141
RNA type mRNA
GC content 0.46
exon number 23
gene id golga1
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 4704717 ~ 4735322 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTTTGCCAAGTTGAAGAAGAAGATTGCAGAGGAAGCGGCCACAGCACCTCGGAGTGGTGTTCGTATACCGCGCACCATCAGCAAGGAATCCATCACCTCAGTGGGGGCAGACTCTGGGGATGACTTTGCATCTGATGGCAGCAGCTCCAGGGACGACTTGCCCGCACAGCTTCTCAGGAGGAATGATCAGATCCGGAAGCTGGAGGCCAAGCTGTCAGACTACGCTGAGCAGCTACGAATTATGCAGAAGACCAAGGACAAGCTTGAAATTGCATTAGAAAAGCATCAGGATTTATCCATAAAGAAACTTCAAGACCAGAATGAGTCTCACCAGGCCGGCAGAGCCAAAATGGCAGAGGGGATGGCTTTAGCACTGGAAAAGAAGGATCAGGAATGGATGGAGAAGATGGCTGATATGGAAAAGGACAAAGCTGTCCTGTCAGCCCGGATAGAGGAGATGATGGAGCAAAGCTTAGCACTCTTCCAGAAAAGGGATGACCTGGATGAACTGGAGGGCTTTCAGCAGCAGGAGCTCGCTAAAGTTAAACACATGTTGCTGAAGAAGGAGGAACAGCTGAGCCAGCGGGATCAGGAGCTCCAGCAAAAGGAGGCTGAAGTTCAGTCAGCAAAGCAAGGGTTGTCTGAGGCTCGAAGGAAACTCCAGGCTCTGGAAAAGCAGCATGAGGAGAGCTGCAGACTCAACTCGGAGTTCGAAATAGAGCGAGAGGAACTGCTGCTGCTCAGAGAGGAGGCGGACAAGAAGATCAGTGAGCTGGAGGGAGGATGCCAGGAGCTGCAGTCAGTCATTCAGCAGGTCTCTGAAGACTTTCAGAAGTCACAGAGTATGGTGTCAACTTTAGAAAGGTCCCTCCAAGAATTACAGACTGAGCATGATGCCCTGAAGTTGCAACAACAAAAGGCTGCTGTAACGGAGGAGGACAAGGAGCGCTTGTTAGTGGACCTTCAGAAGAAAGTGACGTCTCTGGAGAGACGGCTGCATGGGAACCTGAGCCAGGACGAGCATCTACAGGAGCTTCTCCAGGAGAAGTCCAGCCTGGAGCAAAGTCTGGAAGAGACCAGAGCAGAGCTGCTGCTGGTTCGGACCAACCATGCTGATACTGTCAGCTCTCTGGAGACGCAGGTATCCAGAATGAGCTGCAGCATTACTGAGCTGCAGACCCTTCTCCGACACAAAGACGACTCCTCCAGAGcctacagagagagaacagacacACAAATAGCTAATTTGGAGCAGAAAGTCCAGGAGAGTAGTGAGAGACTGAAGAGTGCAGAGCATCAGATCACAGAGAAACAGCAGCACATGGCTAAACAGCTAGGAGAGTGGAGTGCAGAGAAGGCCTTTCTGGATCAGCAGGTCTGTTTGTTACAGCAGCAGAGTGAGGAGAAGACCAGCCGCCTGGAGGAAAGTATCACCTCtttacagacagaaagacagatgtTGCATGACAGAATGGCTGATCTGGACAAGCAGAGGGACGAAGCAAACGCCACTCTGAGCCAGCGGACAGGCGAGCTGGAACAGTGCAGGGCGGAGCTGAACAGTCAGCAGACAGTGAGCACAGAAATTGCCAAAGCTCTCGAAGAAACCAGGCGACAGAAGGAGGAACTGCAAACGCAGGTTGGAGAGCTGACCCCATCTCTACAGACCTCACAGCAGGAACTGTCAGCTGTCACTGAGAAGCTAGCACTGAGAGAGGAAGACATCAAAACACTTGAGAAtgaggTGCAGTGTCGGCAGGCATCACTGGTCCAGCTACAGCAGGACGTAGAGCAGCAGCGAGCCCAGCTAGAGCAGATGCTGCTGGACAAAGACTCCCAGCTGATCAGCCTGAGGGAGGAGCTGCTCAGCCAGACACAGCAGCTAGATAGCTGCCAGGCGCGGATCTCATACCTGGAGGTTGAGGTGGAAACCTTGACGGAACAGCTTCACAGCCGTGAAGTGTGTGAGGAGGATCATAACGGTAGTGTGACGGTGGATGATCTGGATCACATTCAGAAGGTCAACAGAGAGCTAGAGCAGCAGCTCACCGACAAGAACAGGAGCATcaagcagctgcagcagagacTGGCAGAGCTGAAGAGGACCCTGCAGAAGGAACTGaagttgaagccTGAGCCAGAAGCTGAAGGGAAAGAGAAATTTCCAGAAAACCGAGCAGAAAAACAAGAGAGAGTTTGTCCAGACCCGCTGCCAGCATCGACGCAGAGCCCCCCGACCTCCAACACCACAGTGACCAACACCTCAGACCTCAACGACTCGCGAGAAATCAACTTTGAGTATCTCAAACACGTCGTACTCAAATTTATGTCATCCAGAGAGGCTGAGGCATTCCAGCTAATACGAGCTGTTTCTGTGCTCCTGAACTTCACTCGTGAGGAAGAGGACATGTTGAAACAAACTCTTGAGTACAAGATGTCCTGGTTTGGATCCAAGCCTTCTCCAAAGGGTGCCATCCGGCCTTCAATCTCAGGCAATCCAACTCTTTGGAGCTGATGAGCTGCAGAAAGAGCTATAGCGATGGAGAGAAAGGAATCAAAGGACCGCCTCCAGGAGGAAAAAGTCCGTACGCTGTGTCTTCTATCACTGAGCAGGACTCAGCTTTAAACTTTGAACAGCCTCCCACAGTTCAATGATCTGTGGGGACGGACAGGGCTGCACAGTATGTTCATAATCAGTTGttgattttttaaatgacattatttCCTTGTCAGTGGTTGAAGCAGATGGACTTTTGACCATTATAGAGGGTAAACTATTACACATAATTAATACTGGAGTTTTAAGTGTCTCAAGTCTCATTTTTCTTACCTGACAAATGACGCAGATCTGATGTTTTCTATTCAGTGGAAACAGCAAAAAGTGAGTAAGCATGTCAGAAAATGAGACCCAGCATCAGAATGAAATACCAGACTGACTTGACTGTTGTCTTAGGGGCTGCCTTAATTCTGCCCAGATTCAAACAACACAAGTTACATGGGACTTGATGTGACTGTCTTCACTGAACAAATGGTGCGGCATTGATTGCTGAAGGATTCTGTCACTTGGTTAATCGTTAGGTTTCAATCACAGGGAGGGCTTCTTCATTCAAATTCATTAAATGGTCCGTACAGATTCACCAAGCTGATTGGTTTCAGTATCGGTGAGAGTTTATTTAATAGTACCTGCCAAATGGGCGTTATTATGGAGcccacgtaacttctaggcaacacccgcccttcaatagcattcacacactactattggccaggcttTCATGGTTaggcaaggtaacgtaacccgattAGTTCaagtcctatcccctgaccaatcggctatcccaaatttaaccactcgaggtcaaatgcctaaccccaaccagtcaagctgcttcgtagggcgggacttgcctagaagttacgtgggatccataataacgcgcCAAATGGACATAAGTAGTTCACATTTGTGTCAAAGGATCTAAATTTGTCTACATGTGGAGTTTGAGTCCCCTTCCTAAATTctcataaaaatgtcatcagCCATTTTCTTTACTGGAATAGTTTTCTTCATTATCTGTAGAAATATTCACGATagcattaaaatgaatgtgtatctactagggctgcatgatatgaggaaaTTATGCAATATGCGCTAATGTTGAATATtgcaataacgatattacttgcgataaagaAACATATTTAAGTGTACTGCTTTCAGTGTTCTggtaaaatacaaacaaattgCTTTTGGAATTTAAAACTCATACTCCCTCACAtaaaaatcatttccaacattcttttattgaacaaagtgaaacttgaattgaatataaaaggcacaaCTAAAAAAAGTGACCGTTACATttgaaagtgcagttttctactgaaagtgtctttcgcgatacGTCACAGCCTTTTGCGATgcgtttattgcgccagttgaaaTTGCGCCGATGaccataaaaaacaaacaagatattgtgcagccctagtgtctTCTATGTTCTGATGGCCAAGGATTGCAGTTAGTCTAAGACCACTTTACAAAGCTCCTTGCACAACCAAGGGAATCCAGGCTAGGATTTCTGTCCAGTAGCACCCCTTTAAGAAAAGACAACGCTGACATTTTACTATTTGTGATTGATGATTGATCATGATTTACTGTGTTGAatttttaaatcatcaaaaTTGAAATGGGCATGCATCTTTAAATGAAACTTCCTTGCACTCATTTCtctttaaaatgacattttcttCATATTTCTATACATTATGTCACTGAAATCACCATTACAAGATATGGTCTAACTGGTACTGATTTAAGAGGCTGATACCAGTAATccttatagtatagtatagtatagtatagttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgataaggaACATTTGGTTTATAAAGAATTGGGCTCAATGAATGTCTGTGCTCTCTGATAAAATGGTGGCCTATGCCAACATGCATGCTGAATTCGGCCGCACTGTAGTTCAACAGCTCATTTAAATGGGTATCAAACCTAACTGCTTGGCCATTGGACTGTTATTACTATGACGTGAGGCTCCCAGCAGACCTTGCTCTCAGATCCTCCCGGTTCACCTGGATTGGCAGACCCTAATCTAACCCTGGCCCTAACCTAAACCACCCATAAGCTAAAACATTTGACTAAAGAGTTTGTTTTGGGATCGTACTGTATTTACGTAGCTTTGAAGTTATGGCTTGGAGGCTCAAGTCGGGGTAAAATAAAGTCTCTTTTCTCAAATGCTGCTATTGGGGAAACAAAACATGGCTGATGCAAGCTGTATGCACAGACTGTCCTTTAACACCAATATGAATGATTTACACTATAGTCCATTTGGATAATATACCAATGTGATAAAATAAGTGAATGCTCTGTAAATGATGACTGGAGGACATGCTCTACCTTTACCTGCCTTTGGTAATGTAAATGAAAGTACattccacatatttatttatatatatatatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79601 lncRNA upstream 37041 4644632 ~ 4668855 (+) True G59247
TU79594 lncRNA upstream 81742 4623515 ~ 4624154 (+) True G59240
TU79568 lncRNA upstream 87863 4572152 ~ 4618033 (+) False LOC120560573
TU79556 lncRNA upstream 147831 4557005 ~ 4558065 (+) True G59218
TU79552 lncRNA upstream 150445 4554542 ~ 4555451 (+) False G59217
XR_005639477.1 lncRNA downstream 163536 4898858 ~ 5053215 (+) True LOC120560386
XR_005639476.1 lncRNA downstream 163536 4898858 ~ 5053215 (+) False LOC120560386
TU79672 lncRNA downstream 166661 4901983 ~ 4902190 (+) True G59296
TU79673 lncRNA downstream 175748 4911070 ~ 4911289 (+) True G59297
TU79676 lncRNA downstream 229574 4964896 ~ 5005173 (+) False G59299
XM_039803163.1 mRNA upstream 2855 4696603 ~ 4703041 (+) True LOC120560544
XM_039803220.1 mRNA upstream 87928 4571384 ~ 4617968 (+) False LOC120560573
XM_039804473.1 mRNA downstream 2618 4737940 ~ 4741131 (+) True rpl35
XM_039802814.1 mRNA downstream 317911 5053233 ~ 5370868 (+) True fbrsl1
XM_039802815.1 mRNA downstream 317911 5053233 ~ 5370868 (+) False fbrsl1
XM_039802823.1 mRNA downstream 317911 5053233 ~ 5370868 (+) False fbrsl1
XM_039802827.1 mRNA downstream 317911 5053233 ~ 5370868 (+) False fbrsl1
TU79509 other upstream 174731 4530110 ~ 4531165 (+) False mrpl41
unassigned_transcript_242 other upstream 273157 4432668 ~ 4432739 (+) True trnaq-uug_2
unassigned_transcript_241 other upstream 273643 4432171 ~ 4432253 (+) True trnal-aag_1
TU79482 other upstream 275915 4424141 ~ 4429981 (+) True G59172
TU79382 other upstream 588265 4117279 ~ 4117631 (+) True G59086
TU79671 other downstream 317944 5053266 ~ 5351131 (+) False fbrsl1
TU79728 other downstream 712814 5448136 ~ 5453494 (+) False golga3
TU79729 other downstream 712814 5448136 ~ 5453494 (+) False golga3
TU79733 other downstream 759833 5495155 ~ 5497754 (+) True G59347
TU79987 other downstream 1939595 6674917 ~ 6677484 (+) False kat6a

Expression Profile