RNA id: XM_039803625.1


Basic Information

Item Value
RNA id XM_039803625.1
length 2172
RNA type mRNA
GC content 0.58
exon number 8
gene id arid3c
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 3688045 ~ 3775673 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTGCCTCCAGAGGTCATTCTCACTACAGTTGCCACTTGTTGCCAAAGCAGCTCGGGGCTCCACCATTCAACACCAAACTGATTTCAAGTATTTATTCAGCCTAACTATCGAGACCGACATATTTGGATGCTGAATGCGGAACGTGGCCAGGACTGAAGGAAGACTCGCGTGATCCGGTAGATAACATTTCGGCGCATCCGACGGAGAGAAGCATGGTTGATAACGCAAGTATAGCAACTAAATCTGCTTTGCAAGGCTCTTTCTCGCCCGCCAGTAGCATTCCCATCCCGGCTCCCTTCCCCGGCGTCCAGTCCCAGCAGCCCGCCAGCGGCGGCATGAAGCTCGAAGCGGTCATGGAGAACCTGCAGCGGCAACAGGCAGCGCGGCTGGCCCTGGAGGAGAAGCTCCGGCAGGCggagacagagaaagacctCCGCTCCATGGCCCTGGAGGAGAAGCTCCGGCAGGCggagacagagaaagacctCCGCTCCATGGTGGAGTCGCAGATCCACCAACAAGCGCTGGCTTTCCGACACTACCAGGCGGCGATGCGAGGCGCTCTGGCCGCCGGAGTTGCCAACTCGTCGCTCCCACACATGGAGGTCCGCAGAGCCGCCGAGGACGGGACCTCCTCCAGACCGGGCAGCGACGGTAAGGACCGGGAAGAGGAGGGAGACGACATGGAGGAGCAGGACATCatggatgaagaggaggaggaggagggcgaaGATGATGTCGGGTTGAACCACTACCAGCACCGGGCATCCTCGCTCCAGGGAGTCGGTCTGCCTCCTAAGAGCGGCCCGATGCATCTCATGGCCAGAGTCCCGGCAGCCTATGCCCCGGCCCGCCGCGCAGAGTCTCCCTTGGCCCCGCAGCCCCAGCACCACGACTGGACCTATGAGGAGCAGTTCAAACAGCTGTATGAATTGGATGATGATGAGAAGCGCAAAGAGTTTCTTGATGACCTTTTTACTTTCATGCAGAAACGAGGGACTCCAGTGAATCGGATTCCTATCATGGCCAAGCAGGTGTTGGATCTCTACATGCTCTACAAGCTCGTCACAGAAAAAGGCGGCTTAGTGGAAGTCATCAATAAGAAAATATGGCGTGAGATCACCAAAGGCCTTAACCTCCCTACCTCCATTACCAGTGCAGCTTTCACTCTCCGAACACAGTATATGAAGTACCTCTACCCGTATGAATGTGAAAAGCGGGGACTGAGCTCCCCCGGGGAGCTTCAGGCAGCTATCGACAGCAACCGGCGGGAAGGCCGTCGGCAGAGCTACGGCTCGGCCATCTTCAGCTACTCCCCCGTGGGCACCCCCACCCTCCTGTCCTCGCCAAAGATGCACATGTCCCACCTGTCTCTGCCCACGCACAACAGTGGCCACATCTCCCACGTGCCTGTCATCAAGAAAGAGGAATCCATGATGGCCAGCTGCCTGCCCAGCCGGTTGGCCCTCCCCATGTCACCCAGCGGCCATCACGCAGCAGCCGTGGCCGCCCAGGCAGCCGCAGCCCAGGCCGTCCAGGCCGCGGCCCTGGAACAGCTCAGAGAGAAGCTGGAGAGTGGTGAACCACCagagaagaagatgatgatggtGGCAGAGGAGCAGCAGAGGATGATGCAACACGCCCTGCAGCAGAACCTGCTGGCCATGGCCACGCAGCTGCCCCTCAACATCAAACTCAACAACAGAGATGATAGACAAGAGACCGCATTGAACCTGTCTACCAACGGCATTAGCAGCATCAACATGTCAATAGAAATAAATGGAGTTGTCTACACAGGAGTCCTGTTTGCTCGGCAGTCGGCCATCGCAGCGATGGCGGGACACCGCGGGAGACACAGCAGCTGTCAGACTCAGGGAAAGAGCAGTCCCACGCAGTTCCAgccctcctgctcctcctcctcgtcctcctcctcttcctcgctCCGCGGACACAGAAACTCCTCCCCCTGAGTTTCCTGTCCCTCCTCCCACCCCAGATCCGTTCTCTCCTCAAAGACACAAAGCAGTCGGAGACATGTCCATCGTTGTTTTTCAAGGTGGctgtctctccatctcctcgATCCGAGTCCTTGTAGGTCAGCTAACGTCACAttgaaaagcagcaaatatatttacaggtgAGATATCTGTTCCAGtcgcccccccacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79211 lncRNA upstream 81736 3606062 ~ 3606309 (+) True G58948
TU79205 lncRNA upstream 131866 3547808 ~ 3556179 (+) True G58944
TU79200 lncRNA upstream 164424 3522846 ~ 3523621 (+) True G58941
TU79146 lncRNA upstream 165289 3521131 ~ 3522756 (+) False LOC120560521
TU79156 lncRNA upstream 183296 3504451 ~ 3504749 (+) True G58900
TU79263 lncRNA downstream 23365 3799038 ~ 3803097 (+) True G58986
XR_005639569.1 lncRNA downstream 61634 3837307 ~ 3837679 (+) True LOC120561177
TU79324 lncRNA downstream 115372 3891045 ~ 3891853 (+) True G59033
TU79323 lncRNA downstream 119997 3895670 ~ 3896241 (+) True G59032
TU79333 lncRNA downstream 185387 3961060 ~ 3961319 (+) True G59042
XM_039804121.1 mRNA upstream 12820 3630736 ~ 3675225 (+) True mamdc2a
XM_039803133.1 mRNA upstream 140712 3525307 ~ 3547333 (+) True fam189a2
XM_039803134.1 mRNA upstream 140712 3525307 ~ 3547333 (+) False fam189a2
XM_039803128.1 mRNA upstream 166481 3464332 ~ 3521564 (+) False LOC120560521
XM_039803131.1 mRNA upstream 166481 3470707 ~ 3521564 (+) False LOC120560521
XM_039804162.1 mRNA downstream 42649 3818322 ~ 3827427 (+) True LOC120561175
XM_039804168.1 mRNA downstream 72806 3848479 ~ 3868576 (+) False rad17
XM_039804172.1 mRNA downstream 72806 3848479 ~ 3868576 (+) False rad17
XM_039804174.1 mRNA downstream 72896 3848569 ~ 3865866 (+) False rad17
XM_039804167.1 mRNA downstream 72899 3848572 ~ 3868576 (+) True rad17
TU78941 other upstream 808301 2878401 ~ 2879744 (+) False lman2lb
TU78000 other upstream 3475675 210742 ~ 212370 (+) True LOC120560799
TU79382 other downstream 341606 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 648468 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 656498 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 656995 4432668 ~ 4432739 (+) True trnaq-uug_2
TU79509 other downstream 754437 4530110 ~ 4531165 (+) False mrpl41

Expression Profile