RNA id: XM_039803635.1


Basic Information

Item Value
RNA id XM_039803635.1
length 2102
RNA type mRNA
GC content 0.47
exon number 17
gene id LOC120560787
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 21588876 ~ 21599289 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACATGAACAGCAAGAGAATGGAGCTGGATGGGATAAAGAAGAAGAGTCGAAAAAGGGGGGAAGACAACAACGCCTTTAAATCAGAGGAGCAGATATATATCGATGTGGACAGTGCTCCTGAAGTCACAGACGATGCACACATAAAGACAGATCAACACAACAAAAGCTTCCCTGAAAGGAAAATGGAGGCATTCCAGGGCTATTTGGCAGAGCACAAAGACCAGATCCATCGGATTATATACCTTGTTTTAGCAGCAGGCTTGGTTGCCATAGTGATAGCGGCATGTGTCCTGAACTTCAACCGGGCTGTCGTGCTGCAGGTCATCACCTTGGTTACCATATTCTTCCTGGTCTGGGATTGGATGATGGAACGCTATGGCGACCGGGTGTGGGAGGAACTCTCTCCTATCAGAGACCTTCTCAGCAGAAACTGGTTTTGGATCAGATGgATAACGTACGTGTTACTGCTGATGGCCCTGGTGTGCTGGCTGGCACTGGACATAGCCCAGCAAGGGACTAGACAGCTTGTGTCTTTCTTTGGTTTGCTGCTCCTCATCTTCTTAATGCTGCTGTTCTCCAAACACCCATTCAGGTGGTGTTGGCAAACTTTGCTGTGCGGGATCGGGCTACAGTTTGTCTTTGGTCTGCTGATCCTCAGGACCACATTTGGCTTAGGTGGACTGGAATGGGTCGGAAAACAAgtagagAGATTTTTGTCATTCACAGATATTGGGTCTAAGTTTGTGTTTGGTGCCAGTTACAGAGACCACAACTTCGTCTTCCAGGTGATGCCTATATTGGTTTTTTTAAGCTCCATCATCTCCATCCTCTACTACATTGGCTTCATGCCCTGGCTCATTTACAAGATTGGATTCATAATGCAGGTTACCATGGGAACATCTCCAGCAGAATCGATGGCTGCAGCTGGAAATATATTTTTGGGACATACAGATTCACCTCTCTTGATTCGTCCATACATCAGTGGGCTAACTCGCTCTGAGATCCATGCTGTGATGACAGGAGGTTTTGCCAGCGTCTCTGGTACCATTTTGGGAGCCTATATCTCCTTTGGGGTTGAGGCAACACACTTGTTGACAGCATCACTGATGTCCGCTCCAGCCTCCCTGGCGATCGCCAAGATGTTCTGGCCTGAAACAGAGACCGCCAGTGCAACAGCCAGTCATGACATCAAAATCGACCATGGAGAGAGTAAGAATGTGTTGGAGGCGGCATCCCAAGGTGCATCTTGTGCTGTGGGTTTAGTGGCCAACATAGTTGTCAACCTTATTGCCTTCCTCGCACTGTTGGCCTTTTTGGATGCAGCTTTCTCCTGGTTGGGCGAGATGTTGGACTGTCCGCAGCTCAGCTTTTCGCTCATCTGCTCTTACATGTTCATGCCTCTCTCCTTGATCATGGGTGTTTCCTGGGAGGACAGTTTCATCGTTGCTGAACTGATTGGCACGAAGACAATTATCAATGAGTTTGTAGCCTATCAAAAGTTGTCAGAGTTCATTTCGAGGCGGAAAGCAGGAGGGCCAGAATATGTGGACAACATAAAGCAGTATATTTCTGTCCACTCTGAAACAATTGCAACCTACGCTTTGTGTGGATTTTCCAACCTTGCTTCGCTGGGGATGTCAATTGGAGCACTGTCGTCCTTGGCTCCAGATAGACGGGCTGACATCTCCAGTTGTGCCTTCAGATCTCTGATTGCAGGCAGCGTCTCCTGTTTCATGACGGCTTGTATTGCAGGCATGTTGTACATCCCTGATCTTCAGTGCTCACATTTCCTGAGCACCGAGTTCACCAATGTGACCAGCAGCTCACAACTGGTCACCTGCTGTACACAACTGTataacagTGTGACGGTGTATGAGCTGTTGAACATGACGATCGGAGAAGGATTCAACCAGAGCAGCCTGCAACACTGCTGCACACTGACGCCCCTCACACACTTCAACTGCAGCCTGGTGCTTTAAATCACTGTGAGCAAAAAACACACTTCAATGGTAGTGAACCCTGTGattatttgttaattttttatcTGTAATGTTTACTGTTCatataatacattttcaataaagttgTCCCGCACTGGTTTT

Function

GO:

id name namespace
GO:1901642 nucleoside transmembrane transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0005415 nucleoside molecular_function

KEGG:

id description
K11536 SLC28A; pyrimidine nucleoside transport protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85261 lncRNA upstream 101838 21486769 ~ 21487038 (+) True G63628
TU85260 lncRNA upstream 104210 21479780 ~ 21484666 (+) True G63627
TU85205 lncRNA upstream 241359 21346367 ~ 21347517 (+) True G63576
TU85165 lncRNA upstream 274785 21312753 ~ 21314091 (+) True G63545
TU85120 lncRNA upstream 366225 21164816 ~ 21222651 (+) True G63511
XR_005639467.1 lncRNA downstream 9534 21608823 ~ 21620711 (+) True LOC120560273
TU85279 lncRNA downstream 16934 21616223 ~ 21618602 (+) True G63641
TU85373 lncRNA downstream 245543 21844832 ~ 21845138 (+) True G63714
TU85374 lncRNA downstream 276156 21875445 ~ 21875687 (+) True G63715
TU85491 lncRNA downstream 532595 22131884 ~ 22150124 (+) True G63792
XM_039802852.1 mRNA upstream 130529 21428343 ~ 21458347 (+) True agtpbp1
XM_039802853.1 mRNA upstream 130529 21428343 ~ 21458347 (+) False agtpbp1
XM_039802854.1 mRNA upstream 130529 21428344 ~ 21458347 (+) False agtpbp1
XM_039802855.1 mRNA upstream 130529 21437450 ~ 21458347 (+) False agtpbp1
XM_039803624.1 mRNA upstream 178146 21403963 ~ 21410730 (+) False golm1
XM_039802564.1 mRNA downstream 27723 21627012 ~ 21641536 (+) True hnrnpk
XM_039802569.1 mRNA downstream 27723 21627012 ~ 21641536 (+) False hnrnpk
XM_039802568.1 mRNA downstream 27723 21627012 ~ 21641536 (+) False hnrnpk
XM_039802566.1 mRNA downstream 27829 21627118 ~ 21641536 (+) False hnrnpk
XM_039802567.1 mRNA downstream 28268 21627557 ~ 21641536 (+) False hnrnpk
TU85087 other upstream 910960 20676417 ~ 20677916 (+) True G63480
XR_005639482.1 other upstream 1100038 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other upstream 1100038 20477812 ~ 20488838 (+) False wdr31
TU84360 other upstream 2139926 19434907 ~ 19448950 (+) False rasl10a
XR_005639481.1 other upstream 2907715 18661157 ~ 18681161 (+) False acacb
TU85622 other downstream 1330610 22929899 ~ 22930205 (+) True G63905
TU85875 other downstream 2093373 23692662 ~ 23693291 (+) True G64108
XR_005639471.1 other downstream 3224429 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 3224430 24823719 ~ 24834620 (+) False cdc14b
TU86491 other downstream 4085683 25684972 ~ 25696570 (+) False LOC120561182

Expression Profile