RNA id: XM_039803649.1


Basic Information

Item Value
RNA id XM_039803649.1
length 1924
RNA type mRNA
GC content 0.41
exon number 12
gene id LOC120560800
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 213036 ~ 216499 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGACTCTGGGCTTGGTACGGGAGTTGGAGGCCACAATAGCAAATTGCTGTTTTCAGATAATCACCCAAATAGCACAGTCACAGCAAAAGGATGTGTATGCAGTGGATTGCTACGTGGTACCAACATGGCTACCACCACATTGTCCGGATACCTCGTCTTTCCCcAATGATTTGGCAAACAAGGATTTTGTCCTCATACCTATTTGGAAACCAGGACACTACATGCTCTGTGTTTTgaagctgagagagagacaaatcCTTTTCCCAGACTCCTTATTCCATCTGGAAGCCTCAGTTGGCTTTGGCGATCAACGTTACATTCAGATTTGCAGCGATCTTGCACAGAGGATTATCCCAGGAGAATGGACTGTGATATACAGCAAGGACATCAAAGGTCTCCCAAGACAGGAAGATGGCAATGCCTGTGGGATCTTCATGTTAATGTATGCTCTTTACATTGCGCTGGGGGCAGATTTTGACTTCACAACTGGTGACATGGACACAATCAGGACATGGTGGTGCCTGTTGCTCCTGTCTGGTCATTCAGTTGTCAGGTTCGCACAGAAAAGGAAATATGAAGATCCCATCATAATAGCAGATAAGGATAAGGAGGAGGCAAAGAGGCCCAGGACAATCCCTCCTCAACAGTCGGAACGGCATGAGACGGGACTGCATGACATgggacgctccaggctgcagccatacagtcttgTGGAAAGGGCTTCCCCACTGCGCCCCACCCCACCCATATTACAGTTTAAGGTTATCCGGAGCCGGCTATCCGACAGGGGCCCCCCGCACCCTGCCTATATGCAATTAAACATGTTTGAGAACCATATGAAGATAATAGTATGTAAGGAACGTTAACAGCTTAAGTAAACACACTTTAAAGTTATCTTGTATTTCCAGTTGCAGCTTGGTTCAAGTGACCAATGAATGTCAACAgtacaaaaacaacacaggaaAGGGGTTCTAGTATGTGACCACACCTAGAGGCAAACACGCCTCGTCCCCTTTAGTTTTCATACCAAGTGACAGCTGTTAAAATCTTGCCAGGAGACCTAAGAGGCCAACTGGAGATTTGTGGGAAGACTTAATCACAATAGTGAGGTGCCTGACTATGGGACCTTTAGCCTACAGGTGATATAAAGACATACAAAGGTCAGTAGTGCAGAGAAGATTGATGTGATAGGAGACCTGCTGTTGGGACCTTGTCAGAGGCTTAGCAGCAGCATTCTGGACCTCTTATGGTTCTCCTATGATGTAAAGATGGATAAAATACATAACTTAATAGTCCAGTTGGgatcaaataaacacaaatgtaaTCATATCCATCTCAGTTTAAGACAGAACAGGCCTGAGTTTGTAAATGTTTCTCAATAGGGGAACAGGCAAATATCTTTGCACACCCTGCACAAATTGTACAGCCTTCTTTTCCTTTCTAAAACTGTTATATTGCACATATGTTATTGTGTCTttttacatgcttttattttattatttccagTCTGTATTTATGGTCTTGactaaacactgaaaaaaaagccttttgaaTTTACTTGATTTTAATGTGTACATGATCTCTCTCTTAATTATTTCTTGTCAAACCAACACATTTTATTCACATTAGACTGTCTATTGTGTAATGTTAAGTAATTTCATCATGTCCAGGATGCCTGATTTTAGACTGTAACTGCAACTTAATTTTTGAAAGCTAGTATTATGTAAAGGTAACTTTAAAGCAATTTCATCATGTCCTTGGTACCCGAGTGGGGTCTCTAAATCTAACATGATTTGTTAAAGTTAACTCTATCCAAATGTATTGTAGCCATCGGTTCCTTGTgtgttgtactgtatgttgaaatGATTTGCAAATTGTCTATATTGAGTATTAAAACTTAGAACATACTAATTTTACCCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639514.1 lncRNA upstream 653 210756 ~ 212383 (+) False LOC120560799
XR_005639515.1 lncRNA upstream 653 210756 ~ 212383 (+) False LOC120560799
TU77996 lncRNA upstream 2360 209281 ~ 210676 (+) True G58011
TU77970 lncRNA upstream 86773 121847 ~ 126263 (+) True G57994
XR_005639491.1 lncRNA upstream 102975 108566 ~ 110061 (+) True LOC120560560
TU78015 lncRNA downstream 29392 245891 ~ 252072 (+) True G58021
TU78020 lncRNA downstream 41069 257568 ~ 259697 (+) True G58024
TU78074 lncRNA downstream 325391 541890 ~ 572532 (+) True G58057
TU78181 lncRNA downstream 620080 836579 ~ 837861 (+) False lmx1bb
TU78179 lncRNA downstream 662755 879254 ~ 882251 (+) True G58151
XM_039802738.1 mRNA upstream 25692 183677 ~ 187344 (+) True ccdc157
XM_039802740.1 mRNA upstream 25692 185080 ~ 187344 (+) False ccdc157
XM_039802739.1 mRNA upstream 27524 183677 ~ 185512 (+) False ccdc157
XM_039803187.1 mRNA upstream 113532 79632 ~ 99504 (+) False LOC120560558
XM_039804134.1 mRNA downstream 6642 223141 ~ 242641 (+) False LOC120561159
XM_039804136.1 mRNA downstream 6858 223357 ~ 244194 (+) False LOC120561159
XM_039804135.1 mRNA downstream 7157 223656 ~ 244194 (+) False LOC120561159
XM_039804139.1 mRNA downstream 7157 223656 ~ 240844 (+) False LOC120561159
XM_039804138.1 mRNA downstream 7600 224099 ~ 244194 (+) True LOC120561159
TU78000 other upstream 666 210742 ~ 212370 (+) True LOC120560799
TU78941 other downstream 2661902 2878401 ~ 2879744 (+) False lman2lb
TU79382 other downstream 3900780 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 4207642 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 4215672 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 4216169 4432668 ~ 4432739 (+) True trnaq-uug_2

Expression Profile