RNA id: XM_039803654.1


Basic Information

Item Value
RNA id XM_039803654.1
length 3380
RNA type mRNA
GC content 0.54
exon number 15
gene id ssh1a
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 19002296 ~ 19022881 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tccgtccatccatcAGTTGTATGTATCGTTAGCTCAGCAGCTAGCAGCTCAGCAGGCCCAGCGGCCGGCCGGTGCGTCCACAGCTTCCAGCCATGGCGTTGGTTACTCTGCAGCGGTCCCCGACCCCGAGCGCCGCATCCACCGCCAGCACAGCTACCACCACCGCGGGGGAGGATTTTGGGAGTGAAGATGAACGGCGAATAAATCAGAGCCTGAGTGAGAGCTTCTTCATGGTGAAGGGTGCTGCTCTCTTTCTGCAGCAGGGGAGCAGTCAACAGAGCCAGAAAGCACATCCTCACCACAAACATGCagGTGACTTACCTCAACACTTGCAGGTGATGATAAACATTCTTCGCTCGGAGGACAGAATCAAACTGGCGGTGCGGCTGGAGAGTGCATGGTCAGATCGTGTGCGGTACATGGTGGTGGTGTACACCAGTGGGCGACAAGACACGGAGGAGAACATCCTACTGGGAATCGACTTTACCAGCAAAGACTGcAAAAGCTGTTCGATCGGCATGACGCTACCTCTGTGGAGTGACACAAAGATCCACCTGGATGGAGATGGGGGCTTCACTGTGAACACAGCAAGTCGGACTCATGTCTTCAAACCCGTGTCGGTGCAGGCTATGTGGTCAGCCCTGCAGGTGCTGCACAAGGCATGCGAGGTGTCACGCAGGCATAACTACTTCCCTGGAGGCATGGCTCTCACCTGGATGGGCTACTATGAGAGCTGCATTGCTTCAGAGCAGAGCTGTATCAACGAGTGGAACACCATGAAGGACTTGGAGACCACACGGCTGGACTCACCCACCATGTTTGTCGACAAgccttcagagagagagaggacaggatGCCTTATTAAAGCCAAACTCAGAAGCATCATGACGTGCCGGGACCTCGAGAACGTCACCAGCAAACAAATCCGTACAGAGTTGGAACAACACATGAACTGTAACCTGAAGGAGTACAAAGAGTTCATCGACAATGAGATGCTGCTGATCCTGGGTCAGATGGACAAACCCACACTCATCTTTGATCACGTCTACCTGGGTTCTGAATGGAATGCATCTAATTTGGAGGAGCTGCAAGAGTCAGGGGTGGGCTACATCCTCAACGTTACCAGGGAGATAGACAACTTCTTTCCAGGCACATTTTGTTATCACAACATACGCGTCTATGATGAAGACGCCACCGACCTGCTGGCTCACTGGAATGAGACGTACAACTTCATTGTTAAAGCAAAAAAGAACGGCTCCAAGTGTCTTGTTCACTGCAAGATGGGTGTGAGTCGGTCTGCCTCCACCGTCATCGCTTATGCCATGAAAGAGTTCGGCTGGTCCCTAGAGAAGGCTTACAACTTTGTCAAGCAAAAGAGGAGCATCACACGACCCAACGCTGGCTTCATGAGGCAGCTGGCCGAATACGAGGGCATCTTGGATGCTAGTAAACAGCGTCACAACAAGCTCTGGCATCCAGACGCAGACTGTGAGATGGCAGAGGGGCAGCAGGGGATGTCTCAGTGTtgtggaggggaggagggaggccACCTGACTCCAGAGCCAGGGATGTCTCCCTGCTGTGAGGAGGCGCTGTCTGATAAGGGGGCTGCATGTCCCTCCCCACGCAGGACTGTTGCACTGGATATTGACCCTGCCTACAACAATTACTATTTCCGCCGGCTCTCAGACTCAGCGCTGGACAGCGAACCATCAACACCTGTGCGCGGCCCTCCCCTTCTCGGGATGGAAAAAGTCTTTATAGAAATCGAGGATGTGGAGCGGGACGCTCTGCTGGATGATGAGGCCTTTGATGGGCGTGAAGGCCTGCCACTCCCCAGTTTTGGGCCTACAGCAGAGGGGACCGCTGCCCAGACATGCTCTCAGCGCCCTGAGCCCCTGGAGGAGCTGCGTCTGAGGCTGGAGTTCAGcacagtggaggaggaggatgaggaggaggtgcgAAAGGAGGAGGCAGAGATGGAGGTGCTCATGCAACCAGATGATGGAGGGGGTGGGGATAGTGGCGGAGGGGAGGAAACGCAAGATGTGGAGGTAGAAGGGGATACAGAGGGTAATGGGATGGACCTGGCAACCCTAAATGAAAACTCCAACAATAACAACCATTTGAGCACTCCACGTATCCTCAATGAAAAagcttcctccctccctcctccagtTGATGCTTCTGCATTGTCCTGGAGGGATTCTAAGTCCAAGCTGAAAGAAGACTCTCCACCCCTGGTTTCTAAGCTTTGCCTTAAGCCCAGTTCTCCTGAAGTCCCAAGTGCTTCATTCCCACTGTCCAATACCTCTTCTGAAGGCCTCACGTCTTCAGTGGGACTGCTGCGCCCCTGTGGCCCTCTGTGTGACTGTGCCAACTGTGCTGCCTCCCCAGCCACAGCTCTACTCAACAGAGAGAAGCAGCCAGGAAACGCACCGTACTTACTGGAGCCGAAGGACGATGGTGACTTATTGAAAGTAAAGAATGAGAGTCAGAAAAGTCAATCTGAAGCTGCCTCAGAGAATCTCCCTGAGCTGATGAAAATGGATTCGGAGGAAGAGAACCTAGCCGTGGCTTGCTACATTGGCCAACAACAGGAGACCCTGTTGCAGCTGCAGAGGTCTGGGCTGGTCCGCCGACGTGCAGAGAGACTAGAGAGACTTTCAGGTTTATCCCAGGAGAGCTTACCTTTGCACACATGCCAAAGGTCCAAAAACAGCCCTTTTCAcactgaggaggaagaggagttcTCCGGCTTCCCTAAATCTTCTACACCATGCCAAGTGCGGTTAGAGCCACTGGTGGTGCCACTGAGCAATGAAGCCTTGTTGGGGGTGGTGGGGTCTGGGTTGCTCACACCCACCTCCTCGCCTCATGGCTCCACCCTGACACGCAGCTCCAGCAGTGACAGTCTGCGCAGCGTGAGGGGGAAACCTGGCCTTGTGCGTCAGAGGGCACAGGAGATCGAGACCCGCATGCGTCTGGCAGGCCTAACAGTGTCCTCGAGGCTGAAGCGGTCCAACTCGCTGGCCAAGTTGGGCAGCCTCAACTTTTCCTCAGAGGACCTGTGTTCAGCCTGCTCCTCAGATGCAGGAACACTACTGCTCCTCTCGCTGTCCCCAGAGCCAGAGCCCGGCCTGGAGTGGGACTCCCCCACCACCTCTGCTCTGCCCCGGCCCTGCAAGGACCTGCACACTCCAGAGAGAGCACTACCAGGTGAGCCCAGAAGCTGACATATCAAGTGGAGGTTACATACACTCCAACCATCCCCTCATCTGTCACCCTGTGGGGCTGGAGAATTGAGTCAAAGGAAactaatgaaaacaaaaaaaaaacaatgccaaCTGTTGTTATAAGGAGTGTTACACTCTCCTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84099 lncRNA upstream 19675 18966083 ~ 18982623 (+) True G62796
TU84019 lncRNA upstream 137491 18864575 ~ 18864807 (+) True G62755
TU84005 lncRNA upstream 229190 18772755 ~ 18773108 (+) True G62741
TU83993 lncRNA upstream 253802 18747490 ~ 18748496 (+) True G62732
TU84163 lncRNA downstream 58199 19081080 ~ 19081654 (+) False tmem119a
TU84161 lncRNA downstream 62053 19084934 ~ 19086862 (+) True G62836
TU84159 lncRNA downstream 63033 19085914 ~ 19086862 (+) False G62836
XR_005639511.1 lncRNA downstream 128652 19151533 ~ 19153584 (+) True LOC120560789
TU84387 lncRNA downstream 526529 19549410 ~ 19554906 (+) True G63005
XM_039804001.1 mRNA upstream 9319 18985376 ~ 18992979 (+) True svopa
XM_039803562.1 mRNA upstream 28984 18970284 ~ 18973314 (+) False alkbh2
XM_039803821.1 mRNA downstream 6526 19029407 ~ 19074342 (+) True LOC120560931
XM_039803822.1 mRNA downstream 10199 19033080 ~ 19074342 (+) False LOC120560931
XM_039803823.1 mRNA downstream 10204 19033085 ~ 19074342 (+) False LOC120560931
XM_039803824.1 mRNA downstream 19228 19042109 ~ 19074342 (+) False LOC120560931
XM_039803826.1 mRNA downstream 53680 19076561 ~ 19081600 (+) True tmem119a
XR_005639481.1 other upstream 321137 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 582708 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 586292 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 671068 18330705 ~ 18331230 (+) True G62513
XR_005639579.1 other upstream 992980 17998686 ~ 18009318 (+) False cmya5
TU84360 other downstream 412026 19434907 ~ 19448950 (+) False rasl10a
XR_005639482.1 other downstream 1454931 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 1454931 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 1653536 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 2565995 21588876 ~ 21598799 (+) False LOC120560787

Expression Profile