RNA id: XM_039803671.1


Basic Information

Item Value
RNA id XM_039803671.1
length 1081
RNA type mRNA
GC content 0.51
exon number 2
gene id sprn2
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 26324749 ~ 26328928 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATATCTGGTGACGATGGTTCAGCAGCTTAGTACACGCCAAGCCAATGAGCAGGTGTGAGACGGAGTGATCCACTCCACCTGACTGAGATGACTGGACGATAACAGGCTGACCCTGAAACATACGTCTTACTGTCACAAGAGTCTGAGCTGCAGACAAACACCAGGCGTTTCTTTTACTGTCAGAGGAGCAACATCATCTTTGTTTCCATCACAAACAGCCACTCAACAGGATCCATAAATCATGGCTGTCCTGCAGAAGCTACCCCTCACAGTGGCCCTCTGCCTGCTGCTCCTTGCCACACTGTTACCCAGCTCTGAAGCCCGGCGTGGTGGTGGTCGTGGTGGTTTTGGAGGTGGTGGATTTAACAGAGGTGGTGGCTCCAGCCGGGGCTGGGGCGGTGGGGGTGGCCAGGCCTACAGACCGGTCCAGAGCAGTGGCCCCAGTGCAGGGAAAGTAGCCGGGGCAGCTGCAGCGGGCGCCATAGGAGGAGCAATGATTGGGTCTGCCCTGAGCCGCCCAGGGTATGGTGGAGGATATGGAGGCTATGGAGGAGGATATGGTGGAGGGTATGGAGGATATGGAGGGGGGTATGGCTACCCACGATATGGAGTTGGTGGTGGCTACGGCCCCAGGCCTGGCTACGAGCCAGAAGGCTCTGGAGATATGGAGTACTACACTGCAGCATCCAGCGGCCCCATCTACAACAGTATCATCGTTGTCATCGGCTCCCTGATGTCCATGCTGATGGGCCACTGGGTGGCAGTCATGTAGAGCTGGAGACAGAGCTGGGatcccaaaaacacacacacacaggtccaaACAAACCTTCAATAAAAACAACCCACAACCTGGCggaaaacagaactattttcaGTTTAAAGCCTAATGTGACCTAAAATATGACCCTTAAATAATGAAAAGCTGTggcaagtttttgttttttgttttagaaaTATGTCAGAGTTTGACTCGAATGGGTTCCACATTTcttctttaaagtgcccatattatgctcattttcaggttcataattgtaatttgagattgtatcagaataggttcacatggtttaattttca

Function

GO:

id name namespace
GO:0030001 metal ion transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86705 lncRNA upstream 2793 26303850 ~ 26321956 (+) True G64764
TU86587 lncRNA upstream 395591 25928924 ~ 25929158 (+) True G64677
TU86549 lncRNA upstream 396157 25926087 ~ 25928592 (+) False LOC120560359
TU86572 lncRNA upstream 402361 25922163 ~ 25922388 (+) True G64663
TU86567 lncRNA upstream 406656 25917765 ~ 25918093 (+) True G64658
TU86725 lncRNA downstream 42706 26371634 ~ 26383843 (+) False nsd3
TU86797 lncRNA downstream 165407 26494335 ~ 26496987 (+) True c6h22orf39
TU86807 lncRNA downstream 183537 26512465 ~ 26514759 (+) True G64834
TU86810 lncRNA downstream 202824 26531752 ~ 26533420 (+) True G64836
TU86814 lncRNA downstream 206084 26535012 ~ 26535307 (+) False G64838
XM_039804116.1 mRNA upstream 17121 26295751 ~ 26307628 (+) True LOC120561147
XM_039802420.1 mRNA upstream 33283 26249127 ~ 26291466 (+) True slc23a2
XM_039802421.1 mRNA upstream 33283 26249127 ~ 26291466 (+) False slc23a2
XM_039802423.1 mRNA upstream 33283 26249128 ~ 26291466 (+) False slc23a2
XM_039802422.1 mRNA upstream 33283 26249128 ~ 26291466 (+) False slc23a2
XM_039803583.1 mRNA downstream 30192 26359120 ~ 26381494 (+) True nsd3
XM_039803585.1 mRNA downstream 30192 26359120 ~ 26381494 (+) False nsd3
XM_039803586.1 mRNA downstream 30192 26359120 ~ 26381494 (+) False nsd3
XM_039803584.1 mRNA downstream 30192 26359120 ~ 26381494 (+) False nsd3
XM_039803887.1 mRNA downstream 55481 26384409 ~ 26394401 (+) True plpp5
TU86550 other upstream 409220 25914382 ~ 25915529 (+) False LOC120560031
TU86491 other upstream 628179 25684972 ~ 25696570 (+) False LOC120561182
XR_005639471.1 other upstream 1490118 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other upstream 1490129 24823719 ~ 24834620 (+) False cdc14b
TU85875 other upstream 2631458 23692662 ~ 23693291 (+) True G64108
TU86770 other downstream 83941 26412869 ~ 26414597 (+) True G64814
TU86790 other downstream 165407 26494335 ~ 26496386 (+) False c6h22orf39
TU86791 other downstream 165407 26494335 ~ 26496328 (+) False c6h22orf39
TU86793 other downstream 165407 26494335 ~ 26496261 (+) False c6h22orf39
XR_005639500.1 other downstream 285309 26614237 ~ 26642481 (+) False cltcl1

Expression Profile