RNA id: XM_039803673.1


Basic Information

Item Value
RNA id XM_039803673.1
length 3256
RNA type mRNA
GC content 0.47
exon number 15
gene id pip5k1bb
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 17853406 ~ 17895897 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gacatatactgtacactggAGAGACACGCAGGGATTCTTGCTGCTCTCAGTGGAGAAGTGACACCTCAGTTGTGCACAGTCAGCTTGTGGTggaaacacaccacacacattgcGTGTATTTATTTCCTAACCGATTTTACTCATCTGTTGGGGATCGACTGCTTGAGGAAAGGGCTTTCTGTGAGGACTGCAGCAGCCACTCCGAGGAACTGATTATTTCTCCACGACTACGCAGAAGAAGACGATTGGCTGAGGGTCCGCTGACGGATCCAAACCTTCTCATGTTTGCTCAAGCCGACAATCAAGAGATGTCGCCCTGATTGCTGTTTTGTCGGGCACAGCTTTTCATTAGGCAAGATGTCAACCACAACAGAAAATGGGATGGGAGGGCCTTGGAGCACAAGCAGAGAGAAAACATACAAAAAGACGACATCATCGGCCTTGAAGGGGGCCATTCAGCTCGGTATTGGCTATACAGTGGGCAACCTCACCTCCAAGCCTGACAGAGATGTGCTTATGCAAGACTTCTATGTGGTGGAGAGTGTCTTTCTTCCCAGTGAGGGAAGCAACTTGACCCCAGCACATCACTATCCTGACTTTCGCTTCAAGACTTACGCCCCGCTGGCCTTTCGCTACTTCAGGGATCTGTTCGGCATCAAACCAGACGATTACCTGTACTCCCTCGTAAATGAGCCTCTAATTGAGCTGACCAACCCAGGGGCCAGCGGCTCTCTATTCTACCTAACCAGCGATGACGAGTTCATCATTAAAACCGTCCAGCACAAAGAGGCCAAGTTTCTCCAGAGATTACTACCTGGATACTATATGAACCTGAACCAGAATCCACGCACGCTGCTGCCCAAGTTCTACGGACTGTACTGCATCCAGTCTGGAGGCATCAACATCCGACTGGTGGTGATGAACAATGTGCTGCCGCGCTCCGTCAAAATGCACTACAAATACGACCTGAAGGGATCCACTTACAAGAGACGAGCGtccaggaaagagagagagaaggcctGTCCGACTTACAAAGACCTGGACTTCCAGGACATGCATGAAGAAGGGCTTTACTTTGACACAGAGACGTACAACAACCTAATGAAGACCCTGCAGAGAGACTGTCGGGTGCTGGAGAGTTTTAAGATCATGGACTACAGCCTGCTGCTGGGTGTGCACGTCCTGGACCAGAGCcagagagaggggggtgagCCAGGCCAAGCAGGGGGCGACGGGAGGAGACCTGTGGGTCAGCGAGTGCTTTACTCCACTGCCATGGAGTCCATCCAGGGAGACGGCAAGGCTGCAGAAGCCCTCACCACTGACGACACGATGGGTGGCATCCCtgccaaaacacacaaagaagaaaAGCTGTTCATCTTCCTGGGCATCATAGATATTCTACAGTCATATAGGTTCATAAAAAAATTGGAACACTCATGGAAAGCCCTGGTGTACGATGGTGACTCCGTCTCGGTGCACCGGCCTGGGTTTTATGCCAGCCGCTTCCTCAAGTTCATGAGCACGCGTGTCTTCAGGAAGACTCAACCACTTCGATTCTCCCCTTCAAAGAGGACTCGTACGTCCATCCCGGCTCTGAAGTCGTGCTCACAGGAGATCCTTTCATCGCAGGCAGATGAGAGGAACGAGGAGGACAGGAGGGACAGGCTGGGAGGAGCATGCAGCCTGGCCAGTCTGGACACACAAGCTGTGTTCGGCTCGTACCTGCGTCCCGATCTGGTCCCTGCCAACCCGTCCTTCTACGAGGGCTCCTCAATGGGAaccatctccacctcctccatcttCGTCAGCGTAAACAACCAAACAGATGAGAGagATGACGTTGCATCCAGCTCCACGTTTACCCTGGAGGACAGCGCTATCTGCCTCACTTCCGAACAGAGCACCATGGATGTGGATATAGACCGCGATGACGGATCTGTTCTCGATGTCTACTTGTGAAAAGAGCAACTTTACAACCTTCATTTCCTCCTGCCAATCACAAGACAATCGCCACACTCCATTGGACCAGCCAGGCTGGCCTTTGACTCCACTTCCAGTGCTGCTAGATTCATGTTGCCAGTTGTATTGCCAACACATAAAAAGACTGAGATTCTCCACCGGTTGATGGACTAAATGAAGACACCAACATCACAGCGATGGACATCTGCAGGAACCATGTCACATATCATGTAATGTGATGAACATCAGGCTGAACGGAGTGTTGCTTCTTAGAGCATAGTGCCATTAAGTTTTATATATGTATTCTGTTTTCATGGCCTACAAAAAAGGATAAATATTTACTACATATACATATGAGGAGAGGGTAGatacatttctttaaatgtttttttttctgctgaccAGAAAGAAATGAAAGAGCCTTTCAAAGTTTGCAACTGCATATGTTGCTGATAAACAGAAGAGAAATGTTTACAGTGAATTTATGATGGCATCTATGTCCCTGATGAACAAAGGACACACGCCAGCTTGTAGCCACATCCAACACGGATGACTCAGATCAGATATGATGGATTCTGAAGGCCAAACACAGACTGTGACGTGGTTAAAGCAGCCACCTTCTCCTTACTGGGCTATTATTTGTGCTGCCCTGACAGGAACATGAAGCCCTGACGAAGGGCTGCTGTAAAGAGAAGTGAGAAAGGACAGTCACTGGATCTTGGATGAAGTACAGAGCGGAGGGACGATGCACTCACTCTAGATCAAAAGGCACTTTTGACATTGGTTATGATTACTGTAAGAAATATTTTTTCTGAAGACATTGCTTAGGTGGGTGGCCTACCTTACATAAGCACAGATTTGGATATGTGAATATGCACTTTTTCTCTTCAAATGCACACCTCTGTAAGTCCTTGATGCTACATGTACAGAGACAGTGAAGGAACTTTGTAGATCATTTTTGATGTGGAGCTAATAGTTTTGAGGTTTGCGTCATGACTGAGATGCTTTTACTCAGGATATCCTTTGATACTGAATAAGTGTGTCCTCTTCAAGAAGTTATGAGACACGCATCCTACACTTAGAAGCTGTCCGATACCTCTTCATCAAGACCATATCCAACTATAAATGTTGAATTCCATGATCACATGTCGGTTAGACCATAATTTATTATGTAAATCTCAATATTTTACCatttgctgaaaaaaaaagaattacttTAAATCGCTGAATGTAAAGACAATGCATATTTATATTTAGAAGAGACTCCTATAAATAAACTGCATATTTCAATGTT

Function

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0016307 phosphatidylinositol phosphate kinase activity molecular_function

KEGG:

id description
K00889 PIP5K; 1-phosphatidylinositol-4-phosphate 5-kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83447 lncRNA downstream 10954 17841719 ~ 17842452 (-) True G62318
TU83322 lncRNA downstream 276854 17576219 ~ 17576552 (-) True G62231
TU83321 lncRNA downstream 277457 17575641 ~ 17575949 (-) True G62230
TU83289 lncRNA downstream 438060 17414652 ~ 17415346 (-) True G62205
TU83269 lncRNA downstream 767585 17083479 ~ 17085821 (-) True LOC120560425
XR_005639419.1 lncRNA upstream 896 17896791 ~ 17899827 (-) True LOC120560086
XR_005639420.1 lncRNA upstream 896 17896791 ~ 17899826 (-) False LOC120560086
TU83469 lncRNA upstream 19031 17914926 ~ 17926955 (-) True G62333
TU83475 lncRNA upstream 35847 17931742 ~ 17933468 (-) True G62339
TU83567 lncRNA upstream 159356 18055251 ~ 18055851 (-) False G62399
XM_039804298.1 mRNA downstream 28663 17815832 ~ 17824743 (-) True polk
XM_039804481.1 mRNA downstream 38134 17810049 ~ 17815272 (-) True ankdd1b
XM_039803302.1 mRNA downstream 60912 17762435 ~ 17792494 (-) False sv2ca
XM_039803301.1 mRNA downstream 61579 17759241 ~ 17791827 (-) True sv2ca
XM_039803293.1 mRNA downstream 97806 17718628 ~ 17755600 (-) False iqgap2
XM_039804605.1 mRNA upstream 4578 17900473 ~ 17909359 (-) True unc45b
XM_039804606.1 mRNA upstream 5981 17901876 ~ 17909716 (-) False unc45b
XM_039803593.1 mRNA upstream 39481 17935376 ~ 17940540 (-) True dimt1l
XM_039803594.1 mRNA upstream 44707 17940602 ~ 17944550 (-) True cenph
XM_039803327.1 mRNA upstream 71683 17967578 ~ 17988335 (-) False homer1b
XR_005639575.1 other downstream 248286 17598088 ~ 17605120 (-) False LOC120561236
XR_005639576.1 other downstream 248286 17598088 ~ 17605120 (-) False LOC120561236
XR_005639574.1 other downstream 248286 17598088 ~ 17605120 (-) True LOC120561236
XR_005639495.1 other downstream 285392 17541396 ~ 17568014 (-) False LOC120560614
TU83293 other downstream 372592 17478306 ~ 17480814 (-) True G62209
unassigned_transcript_262 other upstream 63918 17959813 ~ 17959884 (-) True trnaq-cug_5
TU83669 other upstream 397361 18293256 ~ 18296678 (-) False LOC120560503
XR_005639489.1 other upstream 403006 18298901 ~ 18303862 (-) False fancg
TU83796 other upstream 481707 18377602 ~ 18380502 (-) True G62580
TU83799 other upstream 487110 18383005 ~ 18386269 (-) True G62582

Expression Profile